Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.15□□□□□ -2.23
PTPN4P29074 MTND4P29-201ENST00000503122 1372 ntBASIC1.14□□□□□ -2.23
PTPN4P29074 Y_RNA.172-201ENST00000363765 102 ntBASIC1.14□□□□□ -2.23
PTPN4P29074 Y_RNA.813-201ENST00000364639 102 ntBASIC1.14□□□□□ -2.23
PTPN4P29074 SNORD114-22-201ENST00000365423 72 ntBASIC1.14□□□□□ -2.23
PTPN4P29074 Y_RNA.445-201ENST00000384168 102 ntBASIC1.14□□□□□ -2.23
PTPN4P29074 RNU6-424P-201ENST00000384367 105 ntBASIC1.14□□□□□ -2.23
PTPN4P29074 Y_RNA.535-201ENST00000384612 99 ntBASIC1.14□□□□□ -2.23
PTPN4P29074 Y_RNA.604-201ENST00000410574 102 ntBASIC1.14□□□□□ -2.23
PTPN4P29074 PMCHL1-202ENST00000423102 261 ntBASIC1.14□□□□□ -2.23
PTPN4P29074 CALM2P4-201ENST00000430810 426 ntBASIC1.14□□□□□ -2.23
PTPN4P29074 AC005042.3-201ENST00000453230 174 ntBASIC1.14□□□□□ -2.23
PTPN4P29074 AC233266.1-201ENST00000454518 96 ntBASIC1.14□□□□□ -2.23
PTPN4P29074 U8.20-201ENST00000459445 131 ntBASIC1.14□□□□□ -2.23
PTPN4P29074 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.14□□□□□ -2.23
PTPN4P29074 RNA5SP168-201ENST00000516642 112 ntBASIC1.14□□□□□ -2.23
PTPN4P29074 AC040926.1-201ENST00000530195 238 ntBASIC1.14□□□□□ -2.23
PTPN4P29074 AC242852.1-201ENST00000612151 96 ntBASIC1.14□□□□□ -2.23
PTPN4P29074 AC244015.1-201ENST00000622301 99 ntBASIC1.14□□□□□ -2.23
PTPN4P29074 AC005592.1-201ENST00000566527 1640 ntBASIC1.14□□□□□ -2.23
PTPN4P29074 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.13□□□□□ -2.23
PTPN4P29074 RNU6-199P-201ENST00000362954 107 ntBASIC1.13□□□□□ -2.23
PTPN4P29074 RNU4-50P-201ENST00000364361 141 ntBASIC1.13□□□□□ -2.23
PTPN4P29074 Y_RNA.329-201ENST00000365209 107 ntBASIC1.13□□□□□ -2.23
PTPN4P29074 SNORD14.1-201ENST00000365609 90 ntBASIC1.13□□□□□ -2.23
PTPN4P29074 Y_RNA.394-201ENST00000383942 103 ntBASIC1.13□□□□□ -2.23
PTPN4P29074 Y_RNA.439-201ENST00000384119 94 ntBASIC1.13□□□□□ -2.23
PTPN4P29074 Y_RNA.460-201ENST00000384255 102 ntBASIC1.13□□□□□ -2.23
PTPN4P29074 U8.16-201ENST00000391279 133 ntBASIC1.13□□□□□ -2.23
PTPN4P29074 AL390729.2-201ENST00000416137 156 ntBASIC1.13□□□□□ -2.23
PTPN4P29074 RPS4XP11-201ENST00000446897 772 ntBASIC1.13□□□□□ -2.23
PTPN4P29074 snoU13.18-201ENST00000459483 104 ntBASIC1.13□□□□□ -2.23
PTPN4P29074 SNORA4-201ENST00000584302 138 ntBASIC1.13□□□□□ -2.23
PTPN4P29074 AL357312.1-201ENST00000603879 298 ntBASIC1.13□□□□□ -2.23
PTPN4P29074 AC004832.4-201ENST00000608952 331 ntBASIC1.13□□□□□ -2.23
PTPN4P29074 PART1_1.1-201ENST00000611761 217 ntBASIC1.13□□□□□ -2.23
PTPN4P29074 AC090574.1-201ENST00000623186 233 ntBASIC1.13□□□□□ -2.23
PTPN4P29074 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
PTPN4P29074 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.12□□□□□ -2.23
PTPN4P29074 MIR96-201ENST00000362288 78 ntBASIC1.12□□□□□ -2.23
PTPN4P29074 Y_RNA.331-201ENST00000365267 102 ntBASIC1.12□□□□□ -2.23
PTPN4P29074 RNU6-474P-201ENST00000384243 107 ntBASIC1.12□□□□□ -2.23
PTPN4P29074 SNORD63-201ENST00000384262 68 ntBASIC1.12□□□□□ -2.23
PTPN4P29074 Y_RNA.471-201ENST00000384312 102 ntBASIC1.12□□□□□ -2.23
PTPN4P29074 Y_RNA.551-201ENST00000384661 102 ntBASIC1.12□□□□□ -2.23
PTPN4P29074 RNU6-130P-201ENST00000411112 103 ntBASIC1.12□□□□□ -2.23
PTPN4P29074 Z98949.2-201ENST00000440996 144 ntBASIC1.12□□□□□ -2.23
PTPN4P29074 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.12□□□□□ -2.23
PTPN4P29074 AL049830.1-201ENST00000468034 425 ntBASIC1.12□□□□□ -2.23
PTPN4P29074 AC092991.1-201ENST00000477176 376 ntBASIC1.12□□□□□ -2.23
PTPN4P29074 Y_RNA.713-201ENST00000517013 96 ntBASIC1.12□□□□□ -2.23
PTPN4P29074 MIR4778-201ENST00000577635 80 ntBASIC1.12□□□□□ -2.23
PTPN4P29074 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.12□□□□□ -2.23
PTPN4P29074 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.12□□□□□ -2.23
PTPN4P29074 GHRLOS.1-201ENST00000610995 70 ntBASIC1.12□□□□□ -2.23
PTPN4P29074 MIRLET7C-201ENST00000362160 84 ntBASIC1.11□□□□□ -2.23
PTPN4P29074 SNORD81.1-201ENST00000363064 77 ntBASIC1.11□□□□□ -2.23
PTPN4P29074 Y_RNA.143-201ENST00000363520 106 ntBASIC1.11□□□□□ -2.23
PTPN4P29074 Y_RNA.148-201ENST00000363557 117 ntBASIC1.11□□□□□ -2.23
PTPN4P29074 RNU4-41P-201ENST00000364426 143 ntBASIC1.11□□□□□ -2.23
PTPN4P29074 RNU6-937P-201ENST00000384325 106 ntBASIC1.11□□□□□ -2.23
PTPN4P29074 Y_RNA.645-201ENST00000391229 102 ntBASIC1.11□□□□□ -2.23
PTPN4P29074 U8.19-201ENST00000459095 133 ntBASIC1.11□□□□□ -2.23
PTPN4P29074 SNORA25.10-201ENST00000515926 124 ntBASIC1.11□□□□□ -2.23
PTPN4P29074 RNU7-110P-201ENST00000516891 62 ntBASIC1.11□□□□□ -2.23
PTPN4P29074 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.11□□□□□ -2.23
PTPN4P29074 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.11□□□□□ -2.23
PTPN4P29074 Y_RNA.28-201ENST00000362554 111 ntBASIC1.1□□□□□ -2.23
PTPN4P29074 SNORA2.2-201ENST00000365473 135 ntBASIC1.1□□□□□ -2.23
PTPN4P29074 RNU6-1080P-201ENST00000383982 107 ntBASIC1.1□□□□□ -2.23
PTPN4P29074 AL451046.2-201ENST00000403074 277 ntBASIC1.1□□□□□ -2.23
PTPN4P29074 MRPL35P3-201ENST00000421557 364 ntBASIC1.1□□□□□ -2.23
PTPN4P29074 RPS20P10-201ENST00000451209 253 ntBASIC1.1□□□□□ -2.23
PTPN4P29074 AC010655.3-201ENST00000478818 450 ntBASIC1.1□□□□□ -2.23
PTPN4P29074 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.1□□□□□ -2.23
PTPN4P29074 SNORA31.4-201ENST00000516049 129 ntBASIC1.1□□□□□ -2.23
PTPN4P29074 AC090049.2-201ENST00000550377 109 ntBASIC1.1□□□□□ -2.23
PTPN4P29074 MIR4295-201ENST00000585286 85 ntBASIC1.1□□□□□ -2.23
PTPN4P29074 AL078603.1-201ENST00000603824 313 ntBASIC1.1□□□□□ -2.23
PTPN4P29074 AC103810.9-201ENST00000606688 112 ntBASIC1.1□□□□□ -2.23
PTPN4P29074 BX284668.6-201ENST00000606899 438 ntBASIC1.1□□□□□ -2.23
PTPN4P29074 AC011373.1-201ENST00000607270 237 ntBASIC1.1□□□□□ -2.23
PTPN4P29074 AC012676.2-201ENST00000619258 186 ntBASIC1.1□□□□□ -2.23
PTPN4P29074 AC106754.2-201ENST00000623006 233 ntBASIC1.1□□□□□ -2.23
PTPN4P29074 Y_RNA.138-201ENST00000363462 102 ntBASIC1.09□□□□□ -2.23
PTPN4P29074 RNU1-93P-201ENST00000364704 169 ntBASIC1.09□□□□□ -2.23
PTPN4P29074 Y_RNA.424-201ENST00000384063 103 ntBASIC1.09□□□□□ -2.23
PTPN4P29074 SNORA25-201ENST00000384384 134 ntBASIC1.09□□□□□ -2.23
PTPN4P29074 MIR222-201ENST00000384992 110 ntBASIC1.09□□□□□ -2.23
PTPN4P29074 MIR653-201ENST00000385279 96 ntBASIC1.09□□□□□ -2.23
PTPN4P29074 RNU4-30P-201ENST00000410245 143 ntBASIC1.09□□□□□ -2.23
PTPN4P29074 RNU6-710P-201ENST00000410424 105 ntBASIC1.09□□□□□ -2.23
PTPN4P29074 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.09□□□□□ -2.23
PTPN4P29074 RPL39P39-201ENST00000455840 151 ntBASIC1.09□□□□□ -2.23
PTPN4P29074 Y_RNA.631-201ENST00000459607 101 ntBASIC1.09□□□□□ -2.23
PTPN4P29074 AC087343.1-201ENST00000477341 475 ntBASIC1.09□□□□□ -2.23
PTPN4P29074 AL133373.1-201ENST00000497098 94 ntBASIC1.09□□□□□ -2.23
PTPN4P29074 RNA5SP220-201ENST00000516298 104 ntBASIC1.09□□□□□ -2.23
PTPN4P29074 RNA5SP404-201ENST00000517118 132 ntBASIC1.09□□□□□ -2.23
PTPN4P29074 AC011604.1-201ENST00000545978 196 ntBASIC1.09□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 169.6 ms