Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL160004.2-201ENST00000432935 350 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 AC099799.1-201ENST00000439809 192 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 RNU6-625P-201ENST00000459412 107 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 AC091179.3-201ENST00000474761 144 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.66□□□□□ -2.3
COL5A3P25940 AC010598.1-201ENST00000510378 103 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.66□□□□□ -2.3
COL5A3P25940 AC097462.1-201ENST00000514125 324 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 SNORA40.9-201ENST00000515895 93 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 RNU6-436P-201ENST00000516171 114 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 AL929325.1-201ENST00000603096 117 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 AL080274.1-201ENST00000605565 220 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 SNORD58B-201ENST00000607313 66 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 AC240442.1-201ENST00000616055 283 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 AL008636.1-201ENST00000625038 1018 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.66□□□□□ -2.3
COL5A3P25940 MIR1302-1-201ENST00000637932 143 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 SNORD114-7-201ENST00000362520 77 ntBASIC0.65□□□□□ -2.31
COL5A3P25940 RNA5SP361-201ENST00000362686 118 ntBASIC0.65□□□□□ -2.31
COL5A3P25940 Y_RNA.263-201ENST00000364659 114 ntBASIC0.65□□□□□ -2.31
COL5A3P25940 RNU6-1040P-201ENST00000383974 107 ntBASIC0.65□□□□□ -2.31
COL5A3P25940 RNU6-890P-201ENST00000384121 107 ntBASIC0.65□□□□□ -2.31
COL5A3P25940 MIR559-201ENST00000385188 96 ntBASIC0.65□□□□□ -2.31
COL5A3P25940 MIR92A1-201ENST00000385233 78 ntBASIC0.65□□□□□ -2.31
COL5A3P25940 AC016909.1-201ENST00000415916 166 ntBASIC0.65□□□□□ -2.31
COL5A3P25940 RNA5SP437-201ENST00000517249 129 ntBASIC0.65□□□□□ -2.31
COL5A3P25940 AC022868.1-201ENST00000517767 391 ntBASIC0.65□□□□□ -2.31
COL5A3P25940 AC023442.1-201ENST00000531247 422 ntBASIC0.65□□□□□ -2.31
COL5A3P25940 RPL21P9-201ENST00000556149 474 ntBASIC0.65□□□□□ -2.31
COL5A3P25940 MIR4802-201ENST00000581881 80 ntBASIC0.65□□□□□ -2.31
COL5A3P25940 VN1R91P-201ENST00000594377 169 ntBASIC0.65□□□□□ -2.31
COL5A3P25940 AL162424.1-201ENST00000602325 221 ntBASIC0.65□□□□□ -2.31
COL5A3P25940 AC022217.4-201ENST00000604389 163 ntBASIC0.65□□□□□ -2.31
COL5A3P25940 MIR8063-201ENST00000621930 81 ntBASIC0.65□□□□□ -2.31
COL5A3P25940 AC006435.5-201ENST00000624486 112 ntBASIC0.65□□□□□ -2.31
COL5A3P25940 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.65□□□□□ -2.31
COL5A3P25940 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
COL5A3P25940 Y_RNA.5-201ENST00000362334 102 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 RNU6-1266P-201ENST00000362794 105 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 Y_RNA.101-201ENST00000363154 102 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 Y_RNA.315-201ENST00000365117 102 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 Y_RNA.356-201ENST00000365475 113 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 SNORA20B-201ENST00000384220 132 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 RNU6-1199P-201ENST00000411249 104 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.64□□□□□ -2.31
COL5A3P25940 AC008134.1-201ENST00000420943 193 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 AC018865.2-201ENST00000423631 129 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 AC005002.2-201ENST00000438228 269 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 UQCRBP2-201ENST00000447827 297 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 CHEK2P4-201ENST00000450340 246 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 RPS26P45-201ENST00000471748 340 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 AC105758.1-201ENST00000506038 399 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 RNA5SP481-201ENST00000516814 122 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 U2.1-201ENST00000618978 145 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 uc_338.22-201ENST00000622722 187 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 AL606534.2-204ENST00000635008 178 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 MIR3674-201ENST00000636576 68 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
COL5A3P25940 MIR369-201ENST00000362155 70 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 SNORA27.1-201ENST00000362604 124 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 RNA5SP368-201ENST00000364298 116 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 SNORA4.2-201ENST00000365313 147 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 RNU6-20P-201ENST00000384106 107 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 RNU2-54P-201ENST00000410299 190 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 PGBD4P5-201ENST00000445958 426 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 U8.20-201ENST00000459445 131 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 TRBVB-201ENST00000477100 408 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 RNU6-1278P-201ENST00000516130 107 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.64□□□□□ -2.31
COL5A3P25940 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.64□□□□□ -2.31
COL5A3P25940 AP001094.1-201ENST00000579805 193 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 AC125232.2-201ENST00000592457 143 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 AC092447.9-201ENST00000603395 144 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 AL365434.2-201ENST00000607979 234 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 AC021506.2-201ENST00000612354 169 ntBASIC0.64□□□□□ -2.31
COL5A3P25940 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
COL5A3P25940 RNU6-1084P-201ENST00000362498 107 ntBASIC0.63□□□□□ -2.31
COL5A3P25940 SNORA33-201ENST00000363664 130 ntBASIC0.63□□□□□ -2.31
COL5A3P25940 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.63□□□□□ -2.31
COL5A3P25940 Y_RNA.424-201ENST00000384063 103 ntBASIC0.63□□□□□ -2.31
COL5A3P25940 RNU6-708P-201ENST00000384217 107 ntBASIC0.63□□□□□ -2.31
COL5A3P25940 MIR515-2-201ENST00000384883 83 ntBASIC0.63□□□□□ -2.31
COL5A3P25940 MIR515-1-201ENST00000384884 83 ntBASIC0.63□□□□□ -2.31
COL5A3P25940 RNA5SP109-201ENST00000391010 116 ntBASIC0.63□□□□□ -2.31
COL5A3P25940 RNU5A-5P-201ENST00000411054 116 ntBASIC0.63□□□□□ -2.31
COL5A3P25940 AL022718.1-201ENST00000412004 84 ntBASIC0.63□□□□□ -2.31
COL5A3P25940 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.63□□□□□ -2.31
COL5A3P25940 AC245047.3-201ENST00000429428 127 ntBASIC0.63□□□□□ -2.31
COL5A3P25940 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC0.63□□□□□ -2.31
COL5A3P25940 AL137792.2-201ENST00000443484 235 ntBASIC0.63□□□□□ -2.31
COL5A3P25940 AC091021.1-201ENST00000468051 388 ntBASIC0.63□□□□□ -2.31
COL5A3P25940 SNORA40.14-201ENST00000516543 86 ntBASIC0.63□□□□□ -2.31
COL5A3P25940 RNU7-172P-201ENST00000517125 64 ntBASIC0.63□□□□□ -2.31
COL5A3P25940 AC022616.4-201ENST00000522985 181 ntBASIC0.63□□□□□ -2.31
COL5A3P25940 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.63□□□□□ -2.31
COL5A3P25940 AP002001.1-203ENST00000534002 267 ntBASIC0.63□□□□□ -2.31
COL5A3P25940 MIR4709-201ENST00000577272 72 ntBASIC0.63□□□□□ -2.31
COL5A3P25940 MIR4659A-201ENST00000580269 81 ntBASIC0.63□□□□□ -2.31
COL5A3P25940 C8orf59P2-201ENST00000603441 271 ntBASIC0.63□□□□□ -2.31
COL5A3P25940 AC022441.3-201ENST00000605737 136 ntBASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 134 ms