Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RNU4-13P-201ENST00000364019 141 ntBASIC1.61□□□□□ -2.15
MSH3P20585 RNU6-1048P-201ENST00000364054 107 ntBASIC1.61□□□□□ -2.15
MSH3P20585 RNU6-740P-201ENST00000364734 105 ntBASIC1.61□□□□□ -2.15
MSH3P20585 U8.7-201ENST00000364940 136 ntBASIC1.61□□□□□ -2.15
MSH3P20585 Y_RNA.350-201ENST00000365409 98 ntBASIC1.61□□□□□ -2.15
MSH3P20585 MIR520G-201ENST00000385064 90 ntBASIC1.61□□□□□ -2.15
MSH3P20585 AL603910.2-201ENST00000407268 136 ntBASIC1.61□□□□□ -2.15
MSH3P20585 RN7SKP101-201ENST00000411376 320 ntBASIC1.61□□□□□ -2.15
MSH3P20585 HSPE1P21-201ENST00000438283 308 ntBASIC1.61□□□□□ -2.15
MSH3P20585 RPS4XP11-201ENST00000446897 772 ntBASIC1.61□□□□□ -2.15
MSH3P20585 MTND1P19-201ENST00000511780 315 ntBASIC1.61□□□□□ -2.15
MSH3P20585 RNU6-1096P-201ENST00000517089 102 ntBASIC1.61□□□□□ -2.15
MSH3P20585 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.61□□□□□ -2.15
MSH3P20585 AC068647.2-201ENST00000637380 353 ntBASIC1.61□□□□□ -2.15
MSH3P20585 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.6□□□□□ -2.15
MSH3P20585 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
MSH3P20585 Y_RNA.416-201ENST00000384014 113 ntBASIC1.6□□□□□ -2.15
MSH3P20585 RNU6-1289P-201ENST00000384431 106 ntBASIC1.6□□□□□ -2.15
MSH3P20585 MIR562-201ENST00000384894 95 ntBASIC1.6□□□□□ -2.15
MSH3P20585 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
MSH3P20585 MIR548H3-201ENST00000408771 118 ntBASIC1.6□□□□□ -2.15
MSH3P20585 U8.19-201ENST00000459095 133 ntBASIC1.6□□□□□ -2.15
MSH3P20585 RNU7-141P-201ENST00000459304 62 ntBASIC1.6□□□□□ -2.15
MSH3P20585 RNU7-115P-201ENST00000516433 55 ntBASIC1.6□□□□□ -2.15
MSH3P20585 SNORA31.17-201ENST00000516953 127 ntBASIC1.6□□□□□ -2.15
MSH3P20585 CBX3P4-201ENST00000538909 354 ntBASIC1.6□□□□□ -2.15
MSH3P20585 AC015712.3-201ENST00000559380 164 ntBASIC1.6□□□□□ -2.15
MSH3P20585 AP003357.1-201ENST00000604497 148 ntBASIC1.6□□□□□ -2.15
MSH3P20585 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.6□□□□□ -2.15
MSH3P20585 snoU18.1-201ENST00000629629 71 ntBASIC1.6□□□□□ -2.15
MSH3P20585 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.6□□□□□ -2.15
MSH3P20585 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.6□□□□□ -2.15
MSH3P20585 AC134026.1-201ENST00000623249 2239 ntBASIC1.6□□□□□ -2.15
MSH3P20585 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
MSH3P20585 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.6□□□□□ -2.15
MSH3P20585 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
MSH3P20585 Y_RNA.117-201ENST00000363294 101 ntBASIC1.59□□□□□ -2.15
MSH3P20585 Y_RNA.307-201ENST00000365022 117 ntBASIC1.59□□□□□ -2.15
MSH3P20585 Y_RNA.401-201ENST00000383965 117 ntBASIC1.59□□□□□ -2.15
MSH3P20585 Y_RNA.447-201ENST00000384184 113 ntBASIC1.59□□□□□ -2.15
MSH3P20585 SNORA72-201ENST00000384339 132 ntBASIC1.59□□□□□ -2.15
MSH3P20585 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
MSH3P20585 RNU2-7P-201ENST00000410794 178 ntBASIC1.59□□□□□ -2.15
MSH3P20585 AC245047.3-201ENST00000429428 127 ntBASIC1.59□□□□□ -2.15
MSH3P20585 HMGN2P23-201ENST00000456759 269 ntBASIC1.59□□□□□ -2.15
MSH3P20585 SNORD13-201ENST00000459299 104 ntBASIC1.59□□□□□ -2.15
MSH3P20585 AC117454.1-201ENST00000491120 168 ntBASIC1.59□□□□□ -2.15
MSH3P20585 Y_RNA.680-201ENST00000516441 93 ntBASIC1.59□□□□□ -2.15
MSH3P20585 RNU6-1291P-201ENST00000516591 104 ntBASIC1.59□□□□□ -2.15
MSH3P20585 RNA5SP481-201ENST00000516814 122 ntBASIC1.59□□□□□ -2.15
MSH3P20585 RNU7-116P-201ENST00000516940 62 ntBASIC1.59□□□□□ -2.15
MSH3P20585 AL358944.1-201ENST00000528537 144 ntBASIC1.59□□□□□ -2.15
MSH3P20585 MIR4643-201ENST00000577473 78 ntBASIC1.59□□□□□ -2.15
MSH3P20585 POLR3GP1-201ENST00000594073 261 ntBASIC1.59□□□□□ -2.15
MSH3P20585 MIR8054-201ENST00000620877 86 ntBASIC1.59□□□□□ -2.15
MSH3P20585 AC100821.1-201ENST00000523153 2479 ntBASIC1.59□□□□□ -2.16
MSH3P20585 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
MSH3P20585 SNORA1B-201ENST00000362535 133 ntBASIC1.58□□□□□ -2.16
MSH3P20585 Y_RNA.82-201ENST00000363000 102 ntBASIC1.58□□□□□ -2.16
MSH3P20585 Y_RNA.92-201ENST00000363043 102 ntBASIC1.58□□□□□ -2.16
MSH3P20585 RNU6-899P-201ENST00000363947 107 ntBASIC1.58□□□□□ -2.16
MSH3P20585 Y_RNA.235-201ENST00000364412 102 ntBASIC1.58□□□□□ -2.16
MSH3P20585 Y_RNA.267-201ENST00000364679 109 ntBASIC1.58□□□□□ -2.16
MSH3P20585 Y_RNA.277-201ENST00000364754 102 ntBASIC1.58□□□□□ -2.16
MSH3P20585 Y_RNA.306-201ENST00000365015 102 ntBASIC1.58□□□□□ -2.16
MSH3P20585 Y_RNA.312-201ENST00000365089 102 ntBASIC1.58□□□□□ -2.16
MSH3P20585 Y_RNA.322-201ENST00000365151 102 ntBASIC1.58□□□□□ -2.16
MSH3P20585 SNORA4.2-201ENST00000365313 147 ntBASIC1.58□□□□□ -2.16
MSH3P20585 Y_RNA.478-201ENST00000384358 107 ntBASIC1.58□□□□□ -2.16
MSH3P20585 RNU6-651P-201ENST00000411040 105 ntBASIC1.58□□□□□ -2.16
MSH3P20585 HSPE1P9-201ENST00000440046 311 ntBASIC1.58□□□□□ -2.16
MSH3P20585 Y_RNA.650-201ENST00000459002 102 ntBASIC1.58□□□□□ -2.16
MSH3P20585 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.58□□□□□ -2.16
MSH3P20585 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.58□□□□□ -2.16
MSH3P20585 SNORA31.10-201ENST00000516482 106 ntBASIC1.58□□□□□ -2.16
MSH3P20585 Y_RNA.777-201ENST00000516982 102 ntBASIC1.58□□□□□ -2.16
MSH3P20585 AC024405.2-202ENST00000532731 184 ntBASIC1.58□□□□□ -2.16
MSH3P20585 AC011604.1-201ENST00000545978 196 ntBASIC1.58□□□□□ -2.16
MSH3P20585 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.58□□□□□ -2.16
MSH3P20585 MIR3128-201ENST00000581957 66 ntBASIC1.58□□□□□ -2.16
MSH3P20585 Y_RNA.771-201ENST00000598668 102 ntBASIC1.58□□□□□ -2.16
MSH3P20585 AL162424.1-201ENST00000602325 221 ntBASIC1.58□□□□□ -2.16
MSH3P20585 AL008718.3-201ENST00000610217 321 ntBASIC1.58□□□□□ -2.16
MSH3P20585 MIR548AY-201ENST00000617669 107 ntBASIC1.58□□□□□ -2.16
MSH3P20585 Y_RNA.789-201ENST00000622480 102 ntBASIC1.58□□□□□ -2.16
MSH3P20585 AC068700.1-201ENST00000565862 3754 ntBASIC1.57□□□□□ -2.16
MSH3P20585 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
MSH3P20585 Y_RNA.20-201ENST00000362479 113 ntBASIC1.57□□□□□ -2.16
MSH3P20585 RNU1-17P-201ENST00000363022 152 ntBASIC1.57□□□□□ -2.16
MSH3P20585 Y_RNA.122-201ENST00000363331 96 ntBASIC1.57□□□□□ -2.16
MSH3P20585 Y_RNA.477-201ENST00000384352 108 ntBASIC1.57□□□□□ -2.16
MSH3P20585 RNU6-997P-201ENST00000384725 107 ntBASIC1.57□□□□□ -2.16
MSH3P20585 MT-TG-201ENST00000387429 68 ntBASIC1.57□□□□□ -2.16
MSH3P20585 RNU6-440P-201ENST00000390882 105 ntBASIC1.57□□□□□ -2.16
MSH3P20585 SNORD58.1-201ENST00000391313 66 ntBASIC1.57□□□□□ -2.16
MSH3P20585 MTCO2P33-201ENST00000402100 465 ntBASIC1.57□□□□□ -2.16
MSH3P20585 Y_RNA.618-201ENST00000410949 107 ntBASIC1.57□□□□□ -2.16
MSH3P20585 AC233266.1-201ENST00000454518 96 ntBASIC1.57□□□□□ -2.16
MSH3P20585 SNORD2.1-201ENST00000458762 69 ntBASIC1.57□□□□□ -2.16
MSH3P20585 AC008834.1-201ENST00000511612 175 ntBASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 187.8 ms