Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AL445435.1-201ENST00000604232 665 ntBASIC-1.79□□□□□ -2.7
HMGA1P17096 RNU6-511P-201ENST00000363496 107 ntBASIC-1.8□□□□□ -2.7
HMGA1P17096 RNU6-726P-201ENST00000364680 107 ntBASIC-1.8□□□□□ -2.7
HMGA1P17096 RNU6-740P-201ENST00000364734 105 ntBASIC-1.8□□□□□ -2.7
HMGA1P17096 RNU6-1336P-201ENST00000383886 109 ntBASIC-1.8□□□□□ -2.7
HMGA1P17096 Y_RNA.536-201ENST00000384621 113 ntBASIC-1.8□□□□□ -2.7
HMGA1P17096 MIR9-2-201ENST00000384838 87 ntBASIC-1.8□□□□□ -2.7
HMGA1P17096 SNORA75.4-201ENST00000391278 119 ntBASIC-1.8□□□□□ -2.7
HMGA1P17096 SNORD110-201ENST00000408189 75 ntBASIC-1.8□□□□□ -2.7
HMGA1P17096 Y_RNA.621-201ENST00000411065 96 ntBASIC-1.8□□□□□ -2.7
HMGA1P17096 AC116353.2-201ENST00000505332 712 ntBASIC-1.8□□□□□ -2.7
HMGA1P17096 AC091133.4-201ENST00000511142 308 ntBASIC-1.8□□□□□ -2.7
HMGA1P17096 RNU6-479P-201ENST00000516348 105 ntBASIC-1.8□□□□□ -2.7
HMGA1P17096 snoU83B.1-201ENST00000517136 88 ntBASIC-1.8□□□□□ -2.7
HMGA1P17096 NAA50-211ENST00000630058 177 ntTSL 5 BASIC-1.8□□□□□ -2.7
HMGA1P17096 AL596211.1-201ENST00000569873 2277 ntBASIC-1.8□□□□□ -2.7
HMGA1P17096 RNU6-403P-201ENST00000363163 104 ntBASIC-1.81□□□□□ -2.7
HMGA1P17096 RNU6-1175P-201ENST00000365200 107 ntBASIC-1.81□□□□□ -2.7
HMGA1P17096 Y_RNA.490-201ENST00000384413 102 ntBASIC-1.81□□□□□ -2.7
HMGA1P17096 RNU6-136P-201ENST00000384663 107 ntBASIC-1.81□□□□□ -2.7
HMGA1P17096 RNU6-291P-201ENST00000384720 107 ntBASIC-1.81□□□□□ -2.7
HMGA1P17096 RPS29P13-201ENST00000402041 169 ntBASIC-1.81□□□□□ -2.7
HMGA1P17096 AC022137.1-201ENST00000483735 151 ntBASIC-1.81□□□□□ -2.7
HMGA1P17096 HSPE1P23-201ENST00000509838 286 ntBASIC-1.81□□□□□ -2.7
HMGA1P17096 RNU6-983P-201ENST00000516004 103 ntBASIC-1.81□□□□□ -2.7
HMGA1P17096 RNU7-188P-201ENST00000517063 64 ntBASIC-1.81□□□□□ -2.7
HMGA1P17096 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC-1.81□□□□□ -2.7
HMGA1P17096 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC-1.81□□□□□ -2.7
HMGA1P17096 POLR3GP2-201ENST00000588366 668 ntBASIC-1.81□□□□□ -2.7
HMGA1P17096 AC005776.1-201ENST00000603164 290 ntBASIC-1.81□□□□□ -2.7
HMGA1P17096 AC126544.2-201ENST00000625174 749 ntBASIC-1.81□□□□□ -2.7
HMGA1P17096 RNU6-1084P-201ENST00000362498 107 ntBASIC-1.82□□□□□ -2.7
HMGA1P17096 RNU6-535P-201ENST00000384722 107 ntBASIC-1.82□□□□□ -2.7
HMGA1P17096 MIR320C1-201ENST00000408566 88 ntBASIC-1.82□□□□□ -2.7
HMGA1P17096 MTATP6P14-201ENST00000455189 673 ntBASIC-1.82□□□□□ -2.7
HMGA1P17096 RPL7P42-201ENST00000481005 679 ntBASIC-1.82□□□□□ -2.7
HMGA1P17096 AC010493.1-201ENST00000513479 292 ntBASIC-1.82□□□□□ -2.7
HMGA1P17096 RNU6-1225P-201ENST00000516336 65 ntBASIC-1.82□□□□□ -2.7
HMGA1P17096 SNORA25.13-201ENST00000516395 103 ntBASIC-1.82□□□□□ -2.7
HMGA1P17096 RNU6-344P-201ENST00000516635 111 ntBASIC-1.82□□□□□ -2.7
HMGA1P17096 HIF1AP1-201ENST00000553642 175 ntBASIC-1.82□□□□□ -2.7
HMGA1P17096 MIR4791-201ENST00000607666 84 ntBASIC-1.82□□□□□ -2.7
HMGA1P17096 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC-1.83□□□□□ -2.7
HMGA1P17096 Y_RNA.56-201ENST00000362798 112 ntBASIC-1.83□□□□□ -2.7
HMGA1P17096 RNU6-708P-201ENST00000384217 107 ntBASIC-1.83□□□□□ -2.7
HMGA1P17096 RNU2-8P-201ENST00000410727 190 ntBASIC-1.83□□□□□ -2.7
HMGA1P17096 ZNF736P7Y-201ENST00000425158 820 ntBASIC-1.83□□□□□ -2.7
HMGA1P17096 ERLEC1P1-201ENST00000433806 578 ntBASIC-1.83□□□□□ -2.7
HMGA1P17096 SEPT14P24-201ENST00000447236 180 ntBASIC-1.83□□□□□ -2.7
HMGA1P17096 AC244505.6-201ENST00000452829 130 ntBASIC-1.83□□□□□ -2.7
HMGA1P17096 MTCO3P38-201ENST00000468910 766 ntBASIC-1.83□□□□□ -2.7
HMGA1P17096 SNORD45.4-201ENST00000516629 73 ntBASIC-1.83□□□□□ -2.7
HMGA1P17096 MTND5P34-201ENST00000568888 325 ntBASIC-1.83□□□□□ -2.7
HMGA1P17096 MIR4520-1-201ENST00000582609 70 ntBASIC-1.83□□□□□ -2.7
HMGA1P17096 RNU6-1115P-201ENST00000362490 106 ntBASIC-1.84□□□□□ -2.7
HMGA1P17096 Y_RNA.49-201ENST00000362714 112 ntBASIC-1.84□□□□□ -2.7
HMGA1P17096 AC010655.3-201ENST00000478818 450 ntBASIC-1.84□□□□□ -2.7
HMGA1P17096 SNORD22.1-201ENST00000516331 125 ntBASIC-1.84□□□□□ -2.7
HMGA1P17096 RNU6-1332P-201ENST00000516666 104 ntBASIC-1.84□□□□□ -2.7
HMGA1P17096 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC-1.84□□□□□ -2.7
HMGA1P17096 Y_RNA.804-201ENST00000615262 101 ntBASIC-1.84□□□□□ -2.7
HMGA1P17096 AL445584.3-201ENST00000617173 78 ntBASIC-1.84□□□□□ -2.7
HMGA1P17096 RNU6-407P-201ENST00000365280 104 ntBASIC-1.85□□□□□ -2.71
HMGA1P17096 Y_RNA.361-201ENST00000365515 120 ntBASIC-1.85□□□□□ -2.71
HMGA1P17096 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC-1.85□□□□□ -2.71
HMGA1P17096 RNU5A-5P-201ENST00000411054 116 ntBASIC-1.85□□□□□ -2.71
HMGA1P17096 RNU6-607P-201ENST00000411283 108 ntBASIC-1.85□□□□□ -2.71
HMGA1P17096 HMGN2P32-201ENST00000444648 269 ntBASIC-1.85□□□□□ -2.71
HMGA1P17096 AP000533.3-201ENST00000447704 118 ntBASIC-1.85□□□□□ -2.71
HMGA1P17096 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC-1.85□□□□□ -2.71
HMGA1P17096 RNU2-10P-201ENST00000516375 211 ntBASIC-1.85□□□□□ -2.71
HMGA1P17096 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC-1.85□□□□□ -2.71
HMGA1P17096 SNORD11B-201ENST00000607707 90 ntBASIC-1.85□□□□□ -2.71
HMGA1P17096 AC013437.2-201ENST00000639587 677 ntBASIC-1.85□□□□□ -2.71
HMGA1P17096 RNU6-827P-201ENST00000365553 106 ntBASIC-1.86□□□□□ -2.71
HMGA1P17096 RNU6-784P-201ENST00000384330 106 ntBASIC-1.86□□□□□ -2.71
HMGA1P17096 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC-1.86□□□□□ -2.71
HMGA1P17096 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC-1.86□□□□□ -2.71
HMGA1P17096 Y_RNA.715-201ENST00000517082 110 ntBASIC-1.86□□□□□ -2.71
HMGA1P17096 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC-1.86□□□□□ -2.71
HMGA1P17096 MIR5708-201ENST00000579723 85 ntBASIC-1.86□□□□□ -2.71
HMGA1P17096 AC008536.2-201ENST00000607284 349 ntBASIC-1.86□□□□□ -2.71
HMGA1P17096 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC-1.86□□□□□ -2.71
HMGA1P17096 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC-1.87□□□□□ -2.71
HMGA1P17096 Y_RNA.86-201ENST00000363020 111 ntBASIC-1.87□□□□□ -2.71
HMGA1P17096 MIR518B-201ENST00000385127 83 ntBASIC-1.87□□□□□ -2.71
HMGA1P17096 RNA5SP494-201ENST00000410653 129 ntBASIC-1.87□□□□□ -2.71
HMGA1P17096 RNU7-181P-201ENST00000517234 74 ntBASIC-1.87□□□□□ -2.71
HMGA1P17096 MIR4762-201ENST00000585261 75 ntBASIC-1.87□□□□□ -2.71
HMGA1P17096 AC091965.4-201ENST00000607691 587 ntBASIC-1.87□□□□□ -2.71
HMGA1P17096 RNU6-1303P-201ENST00000364841 107 ntBASIC-1.88□□□□□ -2.71
HMGA1P17096 RNU6-880P-201ENST00000384526 107 ntBASIC-1.88□□□□□ -2.71
HMGA1P17096 Y_RNA.533-201ENST00000384596 114 ntBASIC-1.88□□□□□ -2.71
HMGA1P17096 SNORD38B-201ENST00000384690 67 ntBASIC-1.88□□□□□ -2.71
HMGA1P17096 MT-TF-201ENST00000387314 71 ntBASIC-1.88□□□□□ -2.71
HMGA1P17096 RNU6-370P-201ENST00000411008 104 ntBASIC-1.88□□□□□ -2.71
HMGA1P17096 RNU6-1001P-201ENST00000411265 100 ntBASIC-1.88□□□□□ -2.71
HMGA1P17096 AL158050.1-201ENST00000416077 457 ntBASIC-1.88□□□□□ -2.71
HMGA1P17096 AC018865.2-201ENST00000423631 129 ntBASIC-1.88□□□□□ -2.71
HMGA1P17096 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC-1.88□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms