Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SNORA36B-201ENST00000410438 131 ntBASIC2.39□□□□□ -2.03
COL3A1P02461 RNU6-383P-201ENST00000410864 94 ntBASIC2.39□□□□□ -2.03
COL3A1P02461 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.39□□□□□ -2.03
COL3A1P02461 RNU7-107P-201ENST00000459121 61 ntBASIC2.39□□□□□ -2.03
COL3A1P02461 SNORD13-201ENST00000459299 104 ntBASIC2.39□□□□□ -2.03
COL3A1P02461 AC117454.1-201ENST00000491120 168 ntBASIC2.39□□□□□ -2.03
COL3A1P02461 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.39□□□□□ -2.03
COL3A1P02461 Y_RNA.712-201ENST00000517011 92 ntBASIC2.39□□□□□ -2.03
COL3A1P02461 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.39□□□□□ -2.03
COL3A1P02461 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.39□□□□□ -2.03
COL3A1P02461 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.39□□□□□ -2.03
COL3A1P02461 MIR3683-201ENST00000580847 82 ntBASIC2.39□□□□□ -2.03
COL3A1P02461 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2.39□□□□□ -2.03
COL3A1P02461 MIR6129-201ENST00000616087 109 ntBASIC2.39□□□□□ -2.03
COL3A1P02461 MIR6076-201ENST00000617521 113 ntBASIC2.39□□□□□ -2.03
COL3A1P02461 CENPCP1-201ENST00000533085 2578 ntBASIC2.38□□□□□ -2.03
COL3A1P02461 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.38□□□□□ -2.03
COL3A1P02461 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
COL3A1P02461 RNU6-1305P-201ENST00000364353 104 ntBASIC2.38□□□□□ -2.03
COL3A1P02461 RNU6-597P-201ENST00000365620 102 ntBASIC2.38□□□□□ -2.03
COL3A1P02461 SNORA22-201ENST00000383907 134 ntBASIC2.38□□□□□ -2.03
COL3A1P02461 SNORA40.18-201ENST00000391200 128 ntBASIC2.38□□□□□ -2.03
COL3A1P02461 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.38□□□□□ -2.03
COL3A1P02461 RNU5E-3P-201ENST00000515913 68 ntBASIC2.38□□□□□ -2.03
COL3A1P02461 Y_RNA.692-201ENST00000516627 105 ntBASIC2.38□□□□□ -2.03
COL3A1P02461 RNU1-40P-201ENST00000516816 164 ntBASIC2.38□□□□□ -2.03
COL3A1P02461 RNU1-97P-201ENST00000516872 164 ntBASIC2.38□□□□□ -2.03
COL3A1P02461 RNA5SP170-201ENST00000517150 101 ntBASIC2.38□□□□□ -2.03
COL3A1P02461 MIR3121-201ENST00000579680 77 ntBASIC2.38□□□□□ -2.03
COL3A1P02461 MIR378D2-201ENST00000580636 98 ntBASIC2.38□□□□□ -2.03
COL3A1P02461 MIR548AY-201ENST00000617669 107 ntBASIC2.38□□□□□ -2.03
COL3A1P02461 AC068647.2-201ENST00000637380 353 ntBASIC2.38□□□□□ -2.03
COL3A1P02461 AC010889.1-201ENST00000566193 2666 ntBASIC2.37□□□□□ -2.03
COL3A1P02461 RNU6-1298P-201ENST00000362456 101 ntBASIC2.37□□□□□ -2.03
COL3A1P02461 RNU6-655P-201ENST00000362858 107 ntBASIC2.37□□□□□ -2.03
COL3A1P02461 VTRNA1-1-201ENST00000363120 99 ntBASIC2.37□□□□□ -2.03
COL3A1P02461 MIR586-201ENST00000385035 97 ntBASIC2.37□□□□□ -2.03
COL3A1P02461 MIR1185-2-201ENST00000408687 86 ntBASIC2.37□□□□□ -2.03
COL3A1P02461 HMGN2P20-201ENST00000437531 273 ntBASIC2.37□□□□□ -2.03
COL3A1P02461 SNRPGP8-201ENST00000454064 226 ntBASIC2.37□□□□□ -2.03
COL3A1P02461 RNU7-116P-201ENST00000516940 62 ntBASIC2.37□□□□□ -2.03
COL3A1P02461 MTND5P34-201ENST00000568888 325 ntBASIC2.37□□□□□ -2.03
COL3A1P02461 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.37□□□□□ -2.03
COL3A1P02461 POLR3GP1-201ENST00000594073 261 ntBASIC2.37□□□□□ -2.03
COL3A1P02461 AL049779.4-201ENST00000604500 156 ntBASIC2.37□□□□□ -2.03
COL3A1P02461 HSPE1P7-201ENST00000604681 321 ntBASIC2.37□□□□□ -2.03
COL3A1P02461 RNU6-755P-201ENST00000364400 103 ntBASIC2.36□□□□□ -2.03
COL3A1P02461 SNORD48-201ENST00000364953 64 ntBASIC2.36□□□□□ -2.03
COL3A1P02461 RNU6-1323P-201ENST00000384025 107 ntBASIC2.36□□□□□ -2.03
COL3A1P02461 RNA5SP496-201ENST00000391240 109 ntBASIC2.36□□□□□ -2.03
COL3A1P02461 AL512604.1-201ENST00000404812 257 ntBASIC2.36□□□□□ -2.03
COL3A1P02461 Y_RNA.622-201ENST00000411091 108 ntBASIC2.36□□□□□ -2.03
COL3A1P02461 AC245047.4-201ENST00000433189 144 ntBASIC2.36□□□□□ -2.03
COL3A1P02461 AC245517.4-201ENST00000448601 281 ntBASIC2.36□□□□□ -2.03
COL3A1P02461 AC016925.1-201ENST00000458303 298 ntBASIC2.36□□□□□ -2.03
COL3A1P02461 AL031274.2-201ENST00000599419 203 ntBASIC2.36□□□□□ -2.03
COL3A1P02461 AC002064.3-201ENST00000623448 346 ntBASIC2.36□□□□□ -2.03
COL3A1P02461 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
COL3A1P02461 AL159152.1-201ENST00000635019 2587 ntBASIC2.35□□□□□ -2.03
COL3A1P02461 RNY1P10-201ENST00000363268 113 ntBASIC2.35□□□□□ -2.03
COL3A1P02461 RNU6-1255P-201ENST00000363434 112 ntBASIC2.35□□□□□ -2.03
COL3A1P02461 SNORD45.3-201ENST00000363836 72 ntBASIC2.35□□□□□ -2.03
COL3A1P02461 RNU6-1082P-201ENST00000364574 107 ntBASIC2.35□□□□□ -2.03
COL3A1P02461 RNU6-1080P-201ENST00000383982 107 ntBASIC2.35□□□□□ -2.03
COL3A1P02461 RNU1-57P-201ENST00000384491 166 ntBASIC2.35□□□□□ -2.03
COL3A1P02461 Y_RNA.525-201ENST00000384570 113 ntBASIC2.35□□□□□ -2.03
COL3A1P02461 MIR518E-201ENST00000385252 88 ntBASIC2.35□□□□□ -2.03
COL3A1P02461 RNU2-55P-201ENST00000411146 174 ntBASIC2.35□□□□□ -2.03
COL3A1P02461 AP003357.1-201ENST00000604497 148 ntBASIC2.35□□□□□ -2.03
COL3A1P02461 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.35□□□□□ -2.03
COL3A1P02461 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.35□□□□□ -2.03
COL3A1P02461 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
COL3A1P02461 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.35□□□□□ -2.03
COL3A1P02461 snoU2_19.1-201ENST00000362361 80 ntBASIC2.34□□□□□ -2.03
COL3A1P02461 RNU6-235P-201ENST00000362644 107 ntBASIC2.34□□□□□ -2.03
COL3A1P02461 SNORA25.7-201ENST00000364375 127 ntBASIC2.34□□□□□ -2.03
COL3A1P02461 SNORA16.1-201ENST00000364597 132 ntBASIC2.34□□□□□ -2.03
COL3A1P02461 RNU6-750P-201ENST00000390946 107 ntBASIC2.34□□□□□ -2.03
COL3A1P02461 Y_RNA.587-201ENST00000391210 103 ntBASIC2.34□□□□□ -2.03
COL3A1P02461 RNU7-23P-201ENST00000459465 62 ntBASIC2.34□□□□□ -2.03
COL3A1P02461 RNU6-1337P-201ENST00000516525 95 ntBASIC2.34□□□□□ -2.03
COL3A1P02461 MIR3935-201ENST00000583472 104 ntBASIC2.34□□□□□ -2.03
COL3A1P02461 AL356280.1-201ENST00000603614 379 ntBASIC2.34□□□□□ -2.03
COL3A1P02461 AC005972.2-201ENST00000604690 348 ntBASIC2.34□□□□□ -2.03
COL3A1P02461 AL359821.1-201ENST00000605519 182 ntBASIC2.34□□□□□ -2.03
COL3A1P02461 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.34□□□□□ -2.03
COL3A1P02461 U6.95-201ENST00000636931 70 ntBASIC2.34□□□□□ -2.03
COL3A1P02461 RNU6-271P-201ENST00000363858 105 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 RNU6-457P-201ENST00000363999 107 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 SNORD18B-201ENST00000365659 72 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 MIR873-201ENST00000401120 77 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 AC019129.1-201ENST00000403786 261 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 MIR1278-201ENST00000408753 81 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 AC112771.1-201ENST00000463581 102 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 RPL30P14-201ENST00000482744 348 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 RPL36AP48-201ENST00000485521 314 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 RPL23AP54-201ENST00000495129 419 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 SNORA72.7-201ENST00000516349 94 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 RNU6-589P-201ENST00000516485 107 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 RNU5F-4P-201ENST00000516581 114 ntBASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms