Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC090142.3-201ENST00000519012 385 ntBASIC0.62□□□□□ -2.31
HLA-DQA1P01909 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC0.62□□□□□ -2.31
HLA-DQA1P01909 AC025253.1-201ENST00000613623 543 ntBASIC0.62□□□□□ -2.31
HLA-DQA1P01909 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.62□□□□□ -2.31
HLA-DQA1P01909 AC099654.14-201ENST00000638599 341 ntBASIC0.62□□□□□ -2.31
HLA-DQA1P01909 RNU6-1084P-201ENST00000362498 107 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 Y_RNA.27-201ENST00000362540 103 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 RNA5SP264-201ENST00000363115 107 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 Y_RNA.259-201ENST00000364619 101 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 RNU6-1175P-201ENST00000365200 107 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 Y_RNA.330-201ENST00000365230 109 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 AC117470.1-201ENST00000381974 330 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 Y_RNA.387-201ENST00000383918 102 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 MIR200A-201ENST00000384875 90 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 MIR628-201ENST00000385229 95 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 MIR100-201ENST00000385259 80 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 MIR942-201ENST00000401111 86 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 AC006461.1-201ENST00000412637 326 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.61□□□□□ -2.31
HLA-DQA1P01909 SNRPGP10-201ENST00000432323 225 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 AC099799.1-201ENST00000439809 192 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 RNU6-911P-201ENST00000516523 104 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 SNORA18.7-201ENST00000516910 131 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 SNORA74.3-201ENST00000517108 154 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 AP003716.2-201ENST00000528260 108 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 AC006600.1-201ENST00000572529 153 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 AC136932.1-201ENST00000574771 208 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 AC211469.2-201ENST00000605461 205 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 AC084781.2-201ENST00000615568 161 ntBASIC0.61□□□□□ -2.31
HLA-DQA1P01909 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
HLA-DQA1P01909 Y_RNA.463-201ENST00000384271 102 ntBASIC0.6□□□□□ -2.31
HLA-DQA1P01909 SNORA72-201ENST00000384339 132 ntBASIC0.6□□□□□ -2.31
HLA-DQA1P01909 MIR520C-201ENST00000385005 87 ntBASIC0.6□□□□□ -2.31
HLA-DQA1P01909 MIR136-201ENST00000385207 82 ntBASIC0.6□□□□□ -2.31
HLA-DQA1P01909 RNY4P36-201ENST00000391116 96 ntBASIC0.6□□□□□ -2.31
HLA-DQA1P01909 MCFD2P1-201ENST00000417812 300 ntBASIC0.6□□□□□ -2.31
HLA-DQA1P01909 POLR2J4-204ENST00000418424 324 ntBASIC0.6□□□□□ -2.31
HLA-DQA1P01909 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.6□□□□□ -2.31
HLA-DQA1P01909 RNU6-197P-201ENST00000516680 100 ntBASIC0.6□□□□□ -2.31
HLA-DQA1P01909 AC022616.4-201ENST00000522985 181 ntBASIC0.6□□□□□ -2.31
HLA-DQA1P01909 MIR4698-201ENST00000577795 80 ntBASIC0.6□□□□□ -2.31
HLA-DQA1P01909 MIR4781-201ENST00000585250 76 ntBASIC0.6□□□□□ -2.31
HLA-DQA1P01909 FAM71BP1-201ENST00000604431 523 ntBASIC0.6□□□□□ -2.31
HLA-DQA1P01909 AC106800.4-201ENST00000614905 153 ntBASIC0.6□□□□□ -2.31
HLA-DQA1P01909 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.6□□□□□ -2.31
HLA-DQA1P01909 SNORD81.1-201ENST00000363064 77 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 Y_RNA.230-201ENST00000364348 109 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 RNU6-1283P-201ENST00000365314 105 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 RNU6-1040P-201ENST00000383974 107 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 Y_RNA.570-201ENST00000384750 101 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 MIR608-201ENST00000384820 100 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 MIR605-201ENST00000385078 83 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 MIR1185-1-201ENST00000408598 86 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 RNU6-855P-201ENST00000410395 104 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 MTCO2P27-201ENST00000420740 428 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 MTND5P15-201ENST00000434246 349 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.59□□□□□ -2.31
HLA-DQA1P01909 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC0.59□□□□□ -2.31
HLA-DQA1P01909 RN7SKP295-201ENST00000517264 153 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.59□□□□□ -2.31
HLA-DQA1P01909 AC023827.1-201ENST00000569247 97 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 MIR4764-201ENST00000580680 88 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 MIR4653-201ENST00000585107 83 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 VN1R91P-201ENST00000594377 169 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 AL132765.2-201ENST00000610812 351 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 AC133104.2-201ENST00000615272 193 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 AC104985.2-201ENST00000620598 500 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 MIR4272-201ENST00000635924 64 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 MIR1302-1-201ENST00000637932 143 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 MIR6866-201ENST00000638146 69 ntBASIC0.59□□□□□ -2.31
HLA-DQA1P01909 snoU2-30.1-201ENST00000365012 70 ntBASIC0.58□□□□□ -2.32
HLA-DQA1P01909 Y_RNA.310-201ENST00000365063 113 ntBASIC0.58□□□□□ -2.32
HLA-DQA1P01909 Y_RNA.368-201ENST00000365547 113 ntBASIC0.58□□□□□ -2.32
HLA-DQA1P01909 Y_RNA.384-201ENST00000383909 102 ntBASIC0.58□□□□□ -2.32
HLA-DQA1P01909 Y_RNA.496-201ENST00000384444 101 ntBASIC0.58□□□□□ -2.32
HLA-DQA1P01909 MIR532-201ENST00000385025 91 ntBASIC0.58□□□□□ -2.32
HLA-DQA1P01909 RNU6-131P-201ENST00000391144 107 ntBASIC0.58□□□□□ -2.32
HLA-DQA1P01909 AL590004.1-201ENST00000405321 300 ntBASIC0.58□□□□□ -2.32
HLA-DQA1P01909 RPS3AP1-201ENST00000413190 320 ntBASIC0.58□□□□□ -2.32
HLA-DQA1P01909 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.58□□□□□ -2.32
HLA-DQA1P01909 AC091951.2-201ENST00000500762 203 ntBASIC0.58□□□□□ -2.32
HLA-DQA1P01909 PSMC1P5-201ENST00000512850 177 ntBASIC0.58□□□□□ -2.32
HLA-DQA1P01909 RNA5SP255-201ENST00000516370 107 ntBASIC0.58□□□□□ -2.32
HLA-DQA1P01909 RNU6-113P-201ENST00000516653 101 ntBASIC0.58□□□□□ -2.32
HLA-DQA1P01909 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.58□□□□□ -2.32
HLA-DQA1P01909 AC005730.3-201ENST00000583067 366 ntBASIC0.58□□□□□ -2.32
HLA-DQA1P01909 UBE2V2P2-201ENST00000587677 504 ntBASIC0.58□□□□□ -2.32
HLA-DQA1P01909 RBM11P1-201ENST00000604951 799 ntBASIC0.58□□□□□ -2.32
HLA-DQA1P01909 AC023934.1-201ENST00000574529 2389 ntBASIC0.58□□□□□ -2.32
HLA-DQA1P01909 MIR103A2-201ENST00000362154 78 ntBASIC0.57□□□□□ -2.32
HLA-DQA1P01909 Y_RNA.80-201ENST00000362996 102 ntBASIC0.57□□□□□ -2.32
HLA-DQA1P01909 Y_RNA.164-201ENST00000363709 102 ntBASIC0.57□□□□□ -2.32
HLA-DQA1P01909 Y_RNA.341-201ENST00000365341 102 ntBASIC0.57□□□□□ -2.32
HLA-DQA1P01909 RNU6-1323P-201ENST00000384025 107 ntBASIC0.57□□□□□ -2.32
HLA-DQA1P01909 Y_RNA.428-201ENST00000384078 102 ntBASIC0.57□□□□□ -2.32
HLA-DQA1P01909 Y_RNA.485-201ENST00000384395 102 ntBASIC0.57□□□□□ -2.32
HLA-DQA1P01909 AF228730.4-201ENST00000421457 183 ntBASIC0.57□□□□□ -2.32
HLA-DQA1P01909 AL606490.4-201ENST00000423117 127 ntBASIC0.57□□□□□ -2.32
HLA-DQA1P01909 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.57□□□□□ -2.32
HLA-DQA1P01909 Y_RNA.632-201ENST00000459189 102 ntBASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms