Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 Y_RNA.368-201ENST00000365547 113 ntBASIC1.61□□□□□ -2.15
HOXC11O43248 MIR517C-201ENST00000385103 95 ntBASIC1.61□□□□□ -2.15
HOXC11O43248 AC005534.2-201ENST00000431047 433 ntBASIC1.61□□□□□ -2.15
HOXC11O43248 MIR3145-201ENST00000580727 82 ntBASIC1.61□□□□□ -2.15
HOXC11O43248 MIR4300-201ENST00000581016 96 ntBASIC1.61□□□□□ -2.15
HOXC11O43248 AL078604.3-201ENST00000615580 211 ntBASIC1.61□□□□□ -2.15
HOXC11O43248 RNU1-42P-201ENST00000364033 160 ntBASIC1.6□□□□□ -2.15
HOXC11O43248 Y_RNA.527-201ENST00000384573 102 ntBASIC1.6□□□□□ -2.15
HOXC11O43248 SNORA67.6-201ENST00000391093 99 ntBASIC1.6□□□□□ -2.15
HOXC11O43248 RPS27P16-201ENST00000425758 201 ntBASIC1.6□□□□□ -2.15
HOXC11O43248 Z98949.2-201ENST00000440996 144 ntBASIC1.6□□□□□ -2.15
HOXC11O43248 RPL39P38-201ENST00000467018 153 ntBASIC1.6□□□□□ -2.15
HOXC11O43248 HMGN1P10-201ENST00000474557 553 ntBASIC1.6□□□□□ -2.15
HOXC11O43248 RPL30P7-201ENST00000479312 323 ntBASIC1.6□□□□□ -2.15
HOXC11O43248 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.6□□□□□ -2.15
HOXC11O43248 RNU4-90P-201ENST00000362773 141 ntBASIC1.59□□□□□ -2.15
HOXC11O43248 Y_RNA.310-201ENST00000365063 113 ntBASIC1.59□□□□□ -2.15
HOXC11O43248 RNU6-1323P-201ENST00000384025 107 ntBASIC1.59□□□□□ -2.15
HOXC11O43248 RNU6-163P-201ENST00000384396 106 ntBASIC1.59□□□□□ -2.15
HOXC11O43248 SNORD115-46-201ENST00000390982 71 ntBASIC1.59□□□□□ -2.15
HOXC11O43248 AL590004.1-201ENST00000405321 300 ntBASIC1.59□□□□□ -2.15
HOXC11O43248 RNU6-321P-201ENST00000410912 106 ntBASIC1.59□□□□□ -2.15
HOXC11O43248 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.59□□□□□ -2.15
HOXC11O43248 RPS29P23-201ENST00000458635 123 ntBASIC1.59□□□□□ -2.15
HOXC11O43248 RNU6-322P-201ENST00000516010 103 ntBASIC1.59□□□□□ -2.15
HOXC11O43248 Y_RNA.714-201ENST00000517065 90 ntBASIC1.59□□□□□ -2.15
HOXC11O43248 POLR3GP1-201ENST00000594073 261 ntBASIC1.59□□□□□ -2.15
HOXC11O43248 AL355297.3-201ENST00000604082 446 ntBASIC1.59□□□□□ -2.15
HOXC11O43248 AL359821.1-201ENST00000605519 182 ntBASIC1.59□□□□□ -2.15
HOXC11O43248 Y_RNA.286-201ENST00000364813 102 ntBASIC1.58□□□□□ -2.16
HOXC11O43248 RNU6-639P-201ENST00000384074 107 ntBASIC1.58□□□□□ -2.16
HOXC11O43248 MIR891A-201ENST00000401237 79 ntBASIC1.58□□□□□ -2.16
HOXC11O43248 RN7SKP51-201ENST00000410781 304 ntBASIC1.58□□□□□ -2.16
HOXC11O43248 CYCTP-201ENST00000504253 315 ntBASIC1.58□□□□□ -2.16
HOXC11O43248 RNY3P15-201ENST00000516297 97 ntBASIC1.58□□□□□ -2.16
HOXC11O43248 AC131281.1-201ENST00000522984 164 ntBASIC1.58□□□□□ -2.16
HOXC11O43248 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.58□□□□□ -2.16
HOXC11O43248 AL161670.1-201ENST00000554348 137 ntBASIC1.58□□□□□ -2.16
HOXC11O43248 MIR4680-201ENST00000580906 66 ntBASIC1.58□□□□□ -2.16
HOXC11O43248 AC120024.3-201ENST00000603167 156 ntBASIC1.58□□□□□ -2.16
HOXC11O43248 AL513534.2-201ENST00000603836 250 ntBASIC1.58□□□□□ -2.16
HOXC11O43248 AL591926.4-201ENST00000616895 298 ntBASIC1.58□□□□□ -2.16
HOXC11O43248 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
HOXC11O43248 RNU4-80P-201ENST00000363200 141 ntBASIC1.57□□□□□ -2.16
HOXC11O43248 MIR1323-201ENST00000408090 73 ntBASIC1.57□□□□□ -2.16
HOXC11O43248 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.57□□□□□ -2.16
HOXC11O43248 MLLT10P1-201ENST00000418346 262 ntBASIC1.57□□□□□ -2.16
HOXC11O43248 AC093850.1-201ENST00000454121 251 ntBASIC1.57□□□□□ -2.16
HOXC11O43248 AC092991.1-201ENST00000477176 376 ntBASIC1.57□□□□□ -2.16
HOXC11O43248 RNU6-1143P-201ENST00000516125 104 ntBASIC1.57□□□□□ -2.16
HOXC11O43248 SNORA31.24-201ENST00000517232 57 ntBASIC1.57□□□□□ -2.16
HOXC11O43248 AL512310.8-201ENST00000550183 120 ntBASIC1.57□□□□□ -2.16
HOXC11O43248 AC113195.1-201ENST00000579952 141 ntBASIC1.57□□□□□ -2.16
HOXC11O43248 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
HOXC11O43248 MIRLET7C-201ENST00000362160 84 ntBASIC1.56□□□□□ -2.16
HOXC11O43248 Y_RNA.210-201ENST00000364161 110 ntBASIC1.56□□□□□ -2.16
HOXC11O43248 RNU6-1227P-201ENST00000383981 107 ntBASIC1.56□□□□□ -2.16
HOXC11O43248 RPL23AP54-201ENST00000495129 419 ntBASIC1.56□□□□□ -2.16
HOXC11O43248 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.56□□□□□ -2.16
HOXC11O43248 AC037487.3-201ENST00000606668 112 ntBASIC1.56□□□□□ -2.16
HOXC11O43248 AC027279.3-201ENST00000625055 122 ntBASIC1.56□□□□□ -2.16
HOXC11O43248 RNU6-1084P-201ENST00000362498 107 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 Y_RNA.164-201ENST00000363709 102 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 RNU6-770P-201ENST00000363929 105 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 Y_RNA.238-201ENST00000364441 102 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 Y_RNA.253-201ENST00000364562 112 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 SNORA33.2-201ENST00000365413 134 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 SNORA2.2-201ENST00000365473 135 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 Y_RNA.569-201ENST00000384749 103 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 AL451046.2-201ENST00000403074 277 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 MTCYBP6-201ENST00000441810 138 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 AC009474.2-201ENST00000451383 136 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 AC010655.3-201ENST00000478818 450 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.55□□□□□ -2.16
HOXC11O43248 AC117454.1-201ENST00000491120 168 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 HMGN1P7-201ENST00000491722 313 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 RNU6-496P-201ENST00000516145 99 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 RNU6-764P-201ENST00000516396 105 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 RNU6-922P-201ENST00000516753 99 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 RN7SKP88-201ENST00000516847 250 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 RNU6-1116P-201ENST00000517269 99 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 AC024405.2-202ENST00000532731 184 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 AC090049.2-201ENST00000550377 109 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 MIR3664-201ENST00000579074 99 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC1.55□□□□□ -2.16
HOXC11O43248 AP003357.1-201ENST00000604497 148 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 7SK.8-201ENST00000612110 250 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 7SK.11-201ENST00000615477 250 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 MIR8065-201ENST00000620577 100 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 7SK.13-201ENST00000622040 250 ntBASIC1.55□□□□□ -2.16
HOXC11O43248 Y_RNA.19-201ENST00000362462 99 ntBASIC1.54□□□□□ -2.16
HOXC11O43248 RNY1P10-201ENST00000363268 113 ntBASIC1.54□□□□□ -2.16
HOXC11O43248 RNU6-833P-201ENST00000363486 107 ntBASIC1.54□□□□□ -2.16
HOXC11O43248 Y_RNA.222-201ENST00000364264 102 ntBASIC1.54□□□□□ -2.16
HOXC11O43248 Y_RNA.276-201ENST00000364732 109 ntBASIC1.54□□□□□ -2.16
HOXC11O43248 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
HOXC11O43248 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
HOXC11O43248 RNU6-131P-201ENST00000391144 107 ntBASIC1.54□□□□□ -2.16
HOXC11O43248 PIGPP3-201ENST00000425307 415 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms