Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 SNORA4.2-201ENST00000365313 147 ntBASIC2.97□□□□□ -1.93
CCDC9Q9Y3X0 RNU6-326P-201ENST00000365480 107 ntBASIC2.97□□□□□ -1.93
CCDC9Q9Y3X0 RNU6ATAC23P-201ENST00000408448 123 ntBASIC2.97□□□□□ -1.93
CCDC9Q9Y3X0 MIR1302-6-201ENST00000408466 90 ntBASIC2.97□□□□□ -1.93
CCDC9Q9Y3X0 RN7SKP200-201ENST00000410564 320 ntBASIC2.97□□□□□ -1.93
CCDC9Q9Y3X0 AC233266.1-201ENST00000454518 96 ntBASIC2.97□□□□□ -1.93
CCDC9Q9Y3X0 AL512605.2-201ENST00000592972 256 ntBASIC2.97□□□□□ -1.93
CCDC9Q9Y3X0 AL096840.1-201ENST00000603287 93 ntBASIC2.97□□□□□ -1.93
CCDC9Q9Y3X0 AC005972.2-201ENST00000604690 348 ntBASIC2.97□□□□□ -1.93
CCDC9Q9Y3X0 AC242852.1-201ENST00000612151 96 ntBASIC2.97□□□□□ -1.93
CCDC9Q9Y3X0 MIR8062-201ENST00000621515 85 ntBASIC2.97□□□□□ -1.93
CCDC9Q9Y3X0 AC244015.1-201ENST00000622301 99 ntBASIC2.97□□□□□ -1.93
CCDC9Q9Y3X0 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
CCDC9Q9Y3X0 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
CCDC9Q9Y3X0 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
CCDC9Q9Y3X0 Y_RNA.172-201ENST00000363765 102 ntBASIC2.96□□□□□ -1.94
CCDC9Q9Y3X0 MIR583-201ENST00000384846 75 ntBASIC2.96□□□□□ -1.94
CCDC9Q9Y3X0 RNU6-1203P-201ENST00000410703 110 ntBASIC2.96□□□□□ -1.94
CCDC9Q9Y3X0 HSPE1P21-201ENST00000438283 308 ntBASIC2.96□□□□□ -1.94
CCDC9Q9Y3X0 RNU6-1291P-201ENST00000516591 104 ntBASIC2.96□□□□□ -1.94
CCDC9Q9Y3X0 AP002004.2-201ENST00000531656 154 ntBASIC2.96□□□□□ -1.94
CCDC9Q9Y3X0 AC091178.2-201ENST00000584401 117 ntBASIC2.96□□□□□ -1.94
CCDC9Q9Y3X0 AC068647.2-201ENST00000637380 353 ntBASIC2.96□□□□□ -1.94
CCDC9Q9Y3X0 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.96□□□□□ -1.94
CCDC9Q9Y3X0 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
CCDC9Q9Y3X0 MIR337-201ENST00000362281 93 ntBASIC2.95□□□□□ -1.94
CCDC9Q9Y3X0 Y_RNA.461-201ENST00000384263 103 ntBASIC2.95□□□□□ -1.94
CCDC9Q9Y3X0 Y_RNA.552-201ENST00000384665 112 ntBASIC2.95□□□□□ -1.94
CCDC9Q9Y3X0 RNU6-440P-201ENST00000390882 105 ntBASIC2.95□□□□□ -1.94
CCDC9Q9Y3X0 MTCO1P5-201ENST00000433573 344 ntBASIC2.95□□□□□ -1.94
CCDC9Q9Y3X0 RNU6-191P-201ENST00000516295 94 ntBASIC2.95□□□□□ -1.94
CCDC9Q9Y3X0 AC067747.1-201ENST00000608026 250 ntBASIC2.95□□□□□ -1.94
CCDC9Q9Y3X0 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC9Q9Y3X0 Y_RNA.288-201ENST00000364854 92 ntBASIC2.94□□□□□ -1.94
CCDC9Q9Y3X0 Y_RNA.310-201ENST00000365063 113 ntBASIC2.94□□□□□ -1.94
CCDC9Q9Y3X0 Y_RNA.376-201ENST00000365638 108 ntBASIC2.94□□□□□ -1.94
CCDC9Q9Y3X0 Y_RNA.447-201ENST00000384184 113 ntBASIC2.94□□□□□ -1.94
CCDC9Q9Y3X0 Y_RNA.621-201ENST00000411065 96 ntBASIC2.94□□□□□ -1.94
CCDC9Q9Y3X0 SUMO1P3-201ENST00000439961 304 ntBASIC2.94□□□□□ -1.94
CCDC9Q9Y3X0 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC9Q9Y3X0 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC9Q9Y3X0 AL929325.1-201ENST00000603096 117 ntBASIC2.94□□□□□ -1.94
CCDC9Q9Y3X0 snoU13.31-201ENST00000607291 104 ntBASIC2.94□□□□□ -1.94
CCDC9Q9Y3X0 AC078938.1-201ENST00000620993 318 ntBASIC2.94□□□□□ -1.94
CCDC9Q9Y3X0 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC9Q9Y3X0 AL359851.1-201ENST00000569460 4997 ntBASIC2.94□□□□□ -1.94
CCDC9Q9Y3X0 Y_RNA.16-201ENST00000362421 102 ntBASIC2.93□□□□□ -1.94
CCDC9Q9Y3X0 SNORA25.6-201ENST00000364121 118 ntBASIC2.93□□□□□ -1.94
CCDC9Q9Y3X0 Y_RNA.396-201ENST00000383949 103 ntBASIC2.93□□□□□ -1.94
CCDC9Q9Y3X0 RNU6-439P-201ENST00000384188 106 ntBASIC2.93□□□□□ -1.94
CCDC9Q9Y3X0 MIR548I3-201ENST00000408378 149 ntBASIC2.93□□□□□ -1.94
CCDC9Q9Y3X0 MIR548I1-201ENST00000408810 149 ntBASIC2.93□□□□□ -1.94
CCDC9Q9Y3X0 RPS4XP11-201ENST00000446897 772 ntBASIC2.93□□□□□ -1.94
CCDC9Q9Y3X0 RNU6-1338P-201ENST00000516328 91 ntBASIC2.93□□□□□ -1.94
CCDC9Q9Y3X0 SNORA44.1-201ENST00000517031 108 ntBASIC2.93□□□□□ -1.94
CCDC9Q9Y3X0 SNORA28-201ENST00000606769 126 ntBASIC2.93□□□□□ -1.94
CCDC9Q9Y3X0 AL365434.2-201ENST00000607979 234 ntBASIC2.93□□□□□ -1.94
CCDC9Q9Y3X0 MIR6132-201ENST00000622083 109 ntBASIC2.93□□□□□ -1.94
CCDC9Q9Y3X0 Y_RNA.265-201ENST00000364677 108 ntBASIC2.92□□□□□ -1.94
CCDC9Q9Y3X0 Y_RNA.466-201ENST00000384294 113 ntBASIC2.92□□□□□ -1.94
CCDC9Q9Y3X0 AL034345.1-201ENST00000407768 123 ntBASIC2.92□□□□□ -1.94
CCDC9Q9Y3X0 RNU4-61P-201ENST00000411243 107 ntBASIC2.92□□□□□ -1.94
CCDC9Q9Y3X0 DEFB108E-201ENST00000524692 240 ntBASIC2.92□□□□□ -1.94
CCDC9Q9Y3X0 AL162424.1-201ENST00000602325 221 ntBASIC2.92□□□□□ -1.94
CCDC9Q9Y3X0 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC9Q9Y3X0 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC9Q9Y3X0 AC092881.1-201ENST00000638218 2733 ntBASIC2.91□□□□□ -1.94
CCDC9Q9Y3X0 MIR378A-201ENST00000362177 66 ntBASIC2.91□□□□□ -1.94
CCDC9Q9Y3X0 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
CCDC9Q9Y3X0 SERF1AP1-201ENST00000514575 187 ntBASIC2.91□□□□□ -1.94
CCDC9Q9Y3X0 SNORA31.10-201ENST00000516482 106 ntBASIC2.91□□□□□ -1.94
CCDC9Q9Y3X0 RNU7-116P-201ENST00000516940 62 ntBASIC2.91□□□□□ -1.94
CCDC9Q9Y3X0 SCARNA24.2-201ENST00000516968 130 ntBASIC2.91□□□□□ -1.94
CCDC9Q9Y3X0 AL358944.1-201ENST00000528537 144 ntBASIC2.91□□□□□ -1.94
CCDC9Q9Y3X0 MIR8074-201ENST00000615081 81 ntBASIC2.91□□□□□ -1.94
CCDC9Q9Y3X0 AC100821.1-201ENST00000523153 2479 ntBASIC2.9□□□□□ -1.95
CCDC9Q9Y3X0 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
CCDC9Q9Y3X0 MIR21-201ENST00000362134 72 ntBASIC2.9□□□□□ -1.95
CCDC9Q9Y3X0 SNORA1B-201ENST00000362535 133 ntBASIC2.9□□□□□ -1.95
CCDC9Q9Y3X0 RNU6-209P-201ENST00000384118 107 ntBASIC2.9□□□□□ -1.95
CCDC9Q9Y3X0 RNU6-472P-201ENST00000384299 107 ntBASIC2.9□□□□□ -1.95
CCDC9Q9Y3X0 SNORA40.18-201ENST00000391200 128 ntBASIC2.9□□□□□ -1.95
CCDC9Q9Y3X0 MIR1267-201ENST00000408723 78 ntBASIC2.9□□□□□ -1.95
CCDC9Q9Y3X0 RNU2-64P-201ENST00000411315 191 ntBASIC2.9□□□□□ -1.95
CCDC9Q9Y3X0 STAG3L5P-204ENST00000443759 179 ntBASIC2.9□□□□□ -1.95
CCDC9Q9Y3X0 RNU6-1132P-201ENST00000459214 107 ntBASIC2.9□□□□□ -1.95
CCDC9Q9Y3X0 AC136628.3-201ENST00000521868 290 ntBASIC2.9□□□□□ -1.95
CCDC9Q9Y3X0 AC103810.8-201ENST00000607347 118 ntBASIC2.9□□□□□ -1.95
CCDC9Q9Y3X0 MIR6766-201ENST00000622641 72 ntBASIC2.9□□□□□ -1.95
CCDC9Q9Y3X0 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.9□□□□□ -1.95
CCDC9Q9Y3X0 Y_RNA.350-201ENST00000365409 98 ntBASIC2.89□□□□□ -1.95
CCDC9Q9Y3X0 SNORA17.3-201ENST00000391159 129 ntBASIC2.89□□□□□ -1.95
CCDC9Q9Y3X0 AC091959.1-201ENST00000495857 238 ntBASIC2.89□□□□□ -1.95
CCDC9Q9Y3X0 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC9Q9Y3X0 RNU7-28P-201ENST00000516759 62 ntBASIC2.89□□□□□ -1.95
CCDC9Q9Y3X0 AC011604.1-201ENST00000545978 196 ntBASIC2.89□□□□□ -1.95
CCDC9Q9Y3X0 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC2.89□□□□□ -1.95
CCDC9Q9Y3X0 AC141273.2-201ENST00000618989 130 ntBASIC2.89□□□□□ -1.95
CCDC9Q9Y3X0 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.88□□□□□ -1.95
CCDC9Q9Y3X0 RNU6-1323P-201ENST00000384025 107 ntBASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms