Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RNU7-128P-201ENST00000517247 62 ntBASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 AC130289.1-201ENST00000577321 73 ntBASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 MIR5688-201ENST00000580619 83 ntBASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 MIR3945-201ENST00000581853 98 ntBASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 AC073413.2-201ENST00000604332 360 ntBASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 Y_RNA.783-201ENST00000613546 102 ntBASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 AC022513.1-201ENST00000624512 117 ntBASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 U6.108-201ENST00000637764 58 ntBASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
LIMCH1Q9UPQ0 AC018630.2-201ENST00000534866 2403 ntBASIC2.35□□□□□ -2.03
LIMCH1Q9UPQ0 Y_RNA.83-201ENST00000363005 113 ntBASIC2.35□□□□□ -2.03
LIMCH1Q9UPQ0 RNU6-1205P-201ENST00000363625 106 ntBASIC2.35□□□□□ -2.03
LIMCH1Q9UPQ0 U8.7-201ENST00000364940 136 ntBASIC2.35□□□□□ -2.03
LIMCH1Q9UPQ0 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.35□□□□□ -2.03
LIMCH1Q9UPQ0 SNORA72-201ENST00000384339 132 ntBASIC2.35□□□□□ -2.03
LIMCH1Q9UPQ0 SNORA67.3-201ENST00000384366 140 ntBASIC2.35□□□□□ -2.03
LIMCH1Q9UPQ0 MTND5P15-201ENST00000434246 349 ntBASIC2.35□□□□□ -2.03
LIMCH1Q9UPQ0 AC079804.2-201ENST00000490376 200 ntBASIC2.35□□□□□ -2.03
LIMCH1Q9UPQ0 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.35□□□□□ -2.03
LIMCH1Q9UPQ0 RNU7-193P-201ENST00000516723 65 ntBASIC2.35□□□□□ -2.03
LIMCH1Q9UPQ0 RNU6-182P-201ENST00000516970 105 ntBASIC2.35□□□□□ -2.03
LIMCH1Q9UPQ0 MIR1273D-201ENST00000577266 86 ntBASIC2.35□□□□□ -2.03
LIMCH1Q9UPQ0 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.35□□□□□ -2.03
LIMCH1Q9UPQ0 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.35□□□□□ -2.03
LIMCH1Q9UPQ0 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
LIMCH1Q9UPQ0 Y_RNA.262-201ENST00000364641 102 ntBASIC2.34□□□□□ -2.03
LIMCH1Q9UPQ0 SNORA48.1-201ENST00000390879 135 ntBASIC2.34□□□□□ -2.03
LIMCH1Q9UPQ0 Y_RNA.626-201ENST00000411288 95 ntBASIC2.34□□□□□ -2.03
LIMCH1Q9UPQ0 AC117454.1-201ENST00000491120 168 ntBASIC2.34□□□□□ -2.03
LIMCH1Q9UPQ0 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.34□□□□□ -2.03
LIMCH1Q9UPQ0 SNORD116-28-201ENST00000516123 91 ntBASIC2.34□□□□□ -2.03
LIMCH1Q9UPQ0 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC2.34□□□□□ -2.03
LIMCH1Q9UPQ0 AC024405.2-202ENST00000532731 184 ntBASIC2.34□□□□□ -2.03
LIMCH1Q9UPQ0 MIR3935-201ENST00000583472 104 ntBASIC2.34□□□□□ -2.03
LIMCH1Q9UPQ0 AC011921.3-201ENST00000605540 361 ntBASIC2.34□□□□□ -2.03
LIMCH1Q9UPQ0 MIR219B-201ENST00000637023 88 ntBASIC2.34□□□□□ -2.03
LIMCH1Q9UPQ0 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
LIMCH1Q9UPQ0 RNU6-1048P-201ENST00000364054 107 ntBASIC2.33□□□□□ -2.04
LIMCH1Q9UPQ0 RNU6-136P-201ENST00000384663 107 ntBASIC2.33□□□□□ -2.04
LIMCH1Q9UPQ0 SNORD23.1-201ENST00000408212 104 ntBASIC2.33□□□□□ -2.04
LIMCH1Q9UPQ0 SNORA36B-201ENST00000410438 131 ntBASIC2.33□□□□□ -2.04
LIMCH1Q9UPQ0 AL445646.1-201ENST00000431784 216 ntBASIC2.33□□□□□ -2.04
LIMCH1Q9UPQ0 AL138752.1-201ENST00000452964 351 ntBASIC2.33□□□□□ -2.04
LIMCH1Q9UPQ0 RPS27P21-201ENST00000486977 252 ntBASIC2.33□□□□□ -2.04
LIMCH1Q9UPQ0 AL163195.1-201ENST00000496941 348 ntBASIC2.33□□□□□ -2.04
LIMCH1Q9UPQ0 RNU6-341P-201ENST00000516973 96 ntBASIC2.33□□□□□ -2.04
LIMCH1Q9UPQ0 SNORA81.3-201ENST00000517283 198 ntBASIC2.33□□□□□ -2.04
LIMCH1Q9UPQ0 AL358944.1-201ENST00000528537 144 ntBASIC2.33□□□□□ -2.04
LIMCH1Q9UPQ0 AC127455.1-201ENST00000565496 145 ntBASIC2.33□□□□□ -2.04
LIMCH1Q9UPQ0 AL365265.1-201ENST00000621045 234 ntBASIC2.33□□□□□ -2.04
LIMCH1Q9UPQ0 MIR6079-201ENST00000635807 62 ntBASIC2.33□□□□□ -2.04
LIMCH1Q9UPQ0 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.33□□□□□ -2.04
LIMCH1Q9UPQ0 AC134026.1-201ENST00000623249 2239 ntBASIC2.32□□□□□ -2.04
LIMCH1Q9UPQ0 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
LIMCH1Q9UPQ0 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
LIMCH1Q9UPQ0 Y_RNA.29-201ENST00000362570 113 ntBASIC2.32□□□□□ -2.04
LIMCH1Q9UPQ0 Y_RNA.297-201ENST00000364950 91 ntBASIC2.32□□□□□ -2.04
LIMCH1Q9UPQ0 RNU2-2P-201ENST00000410396 191 ntBASIC2.32□□□□□ -2.04
LIMCH1Q9UPQ0 AL356379.1-201ENST00000414105 126 ntBASIC2.32□□□□□ -2.04
LIMCH1Q9UPQ0 Z98742.3-201ENST00000418637 326 ntBASIC2.32□□□□□ -2.04
LIMCH1Q9UPQ0 TRBV12-1-201ENST00000479785 344 ntBASIC2.32□□□□□ -2.04
LIMCH1Q9UPQ0 RNU2-19P-201ENST00000517288 84 ntBASIC2.32□□□□□ -2.04
LIMCH1Q9UPQ0 MIR5094-201ENST00000578766 85 ntBASIC2.32□□□□□ -2.04
LIMCH1Q9UPQ0 Z83818.1-201ENST00000603584 150 ntBASIC2.32□□□□□ -2.04
LIMCH1Q9UPQ0 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
LIMCH1Q9UPQ0 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.31□□□□□ -2.04
LIMCH1Q9UPQ0 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
LIMCH1Q9UPQ0 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
LIMCH1Q9UPQ0 SNORA33-201ENST00000363664 130 ntBASIC2.31□□□□□ -2.04
LIMCH1Q9UPQ0 Y_RNA.293-201ENST00000364908 93 ntBASIC2.31□□□□□ -2.04
LIMCH1Q9UPQ0 RNU4-52P-201ENST00000384209 138 ntBASIC2.31□□□□□ -2.04
LIMCH1Q9UPQ0 MIR526A2-201ENST00000390198 65 ntBASIC2.31□□□□□ -2.04
LIMCH1Q9UPQ0 SUMO2P12-201ENST00000405924 140 ntBASIC2.31□□□□□ -2.04
LIMCH1Q9UPQ0 RPS4XP11-201ENST00000446897 772 ntBASIC2.31□□□□□ -2.04
LIMCH1Q9UPQ0 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.31□□□□□ -2.04
LIMCH1Q9UPQ0 RPL23AP54-201ENST00000495129 419 ntBASIC2.31□□□□□ -2.04
LIMCH1Q9UPQ0 RNU6-1096P-201ENST00000517089 102 ntBASIC2.31□□□□□ -2.04
LIMCH1Q9UPQ0 AC084364.2-201ENST00000546924 395 ntBASIC2.31□□□□□ -2.04
LIMCH1Q9UPQ0 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.31□□□□□ -2.04
LIMCH1Q9UPQ0 AC091178.2-201ENST00000584401 117 ntBASIC2.31□□□□□ -2.04
LIMCH1Q9UPQ0 SNRPGP19-201ENST00000603826 189 ntBASIC2.31□□□□□ -2.04
LIMCH1Q9UPQ0 AC098479.1-201ENST00000609225 154 ntBASIC2.31□□□□□ -2.04
LIMCH1Q9UPQ0 Y_RNA.802-201ENST00000614892 130 ntBASIC2.31□□□□□ -2.04
LIMCH1Q9UPQ0 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.31□□□□□ -2.04
LIMCH1Q9UPQ0 AC100821.1-201ENST00000523153 2479 ntBASIC2.31□□□□□ -2.04
LIMCH1Q9UPQ0 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.3□□□□□ -2.04
LIMCH1Q9UPQ0 RNU6-674P-201ENST00000363831 107 ntBASIC2.3□□□□□ -2.04
LIMCH1Q9UPQ0 Y_RNA.274-201ENST00000364714 101 ntBASIC2.3□□□□□ -2.04
LIMCH1Q9UPQ0 SNORA8.3-201ENST00000384679 139 ntBASIC2.3□□□□□ -2.04
LIMCH1Q9UPQ0 RNA5SP450-201ENST00000411206 102 ntBASIC2.3□□□□□ -2.04
LIMCH1Q9UPQ0 RNU6-437P-201ENST00000459408 95 ntBASIC2.3□□□□□ -2.04
LIMCH1Q9UPQ0 AC091021.1-201ENST00000468051 388 ntBASIC2.3□□□□□ -2.04
LIMCH1Q9UPQ0 AC011604.1-201ENST00000545978 196 ntBASIC2.3□□□□□ -2.04
LIMCH1Q9UPQ0 AC091544.4-201ENST00000555268 342 ntBASIC2.3□□□□□ -2.04
LIMCH1Q9UPQ0 MIR4724-201ENST00000579485 89 ntBASIC2.3□□□□□ -2.04
LIMCH1Q9UPQ0 MIR2681-201ENST00000581814 105 ntBASIC2.3□□□□□ -2.04
LIMCH1Q9UPQ0 AC004792.1-201ENST00000614523 137 ntBASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms