Protein–RNA interactions for Protein: Q9NXS3

KLHL28, Kelch-like protein 28, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL28Q9NXS3 FAM71BP1-201ENST00000604431 523 ntBASIC0.77□□□□□ -2.29
KLHL28Q9NXS3 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 MIRLET7C-201ENST00000362160 84 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 Y_RNA.243-201ENST00000364481 109 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 Y_RNA.390-201ENST00000383932 102 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 RNU6-890P-201ENST00000384121 107 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 Y_RNA.466-201ENST00000384294 113 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 MIR608-201ENST00000384820 100 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 MIR613-201ENST00000385248 95 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 RNA5SP482-201ENST00000391269 118 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 MIR873-201ENST00000401120 77 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 Y_RNA.592-201ENST00000410274 109 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 RNU5A-5P-201ENST00000411054 116 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 MRPS18CP6-201ENST00000423587 223 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 Z98949.2-201ENST00000440996 144 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 RNU7-12P-201ENST00000516030 62 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 RNU6-351P-201ENST00000516097 100 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 RNU6-1116P-201ENST00000517269 99 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 AC023442.1-201ENST00000531247 422 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 AP002004.2-201ENST00000531656 154 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 MIR5000-201ENST00000577717 103 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 MIR3684-201ENST00000579779 74 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 AL117336.2-201ENST00000602435 335 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 AC004467.1-201ENST00000615678 330 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 AC127459.3-201ENST00000624328 466 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 MIR6866-201ENST00000638146 69 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 AC008163.1-202ENST00000636004 2889 ntBASIC0.76□□□□□ -2.29
KLHL28Q9NXS3 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.75□□□□□ -2.29
KLHL28Q9NXS3 Y_RNA.577-201ENST00000384794 101 ntBASIC0.75□□□□□ -2.29
KLHL28Q9NXS3 MIR598-201ENST00000384868 97 ntBASIC0.75□□□□□ -2.29
KLHL28Q9NXS3 SNORA69.1-201ENST00000390904 137 ntBASIC0.75□□□□□ -2.29
KLHL28Q9NXS3 SNORA75.6-201ENST00000391318 127 ntBASIC0.75□□□□□ -2.29
KLHL28Q9NXS3 AC006461.1-201ENST00000412637 326 ntBASIC0.75□□□□□ -2.29
KLHL28Q9NXS3 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.75□□□□□ -2.29
KLHL28Q9NXS3 MTND4P28-201ENST00000426217 387 ntBASIC0.75□□□□□ -2.29
KLHL28Q9NXS3 RPEP5-201ENST00000441137 268 ntBASIC0.75□□□□□ -2.29
KLHL28Q9NXS3 AC233266.1-201ENST00000454518 96 ntBASIC0.75□□□□□ -2.29
KLHL28Q9NXS3 RNU7-21P-201ENST00000459430 62 ntBASIC0.75□□□□□ -2.29
KLHL28Q9NXS3 RNU7-169P-201ENST00000459456 61 ntBASIC0.75□□□□□ -2.29
KLHL28Q9NXS3 RNA5SP436-201ENST00000516020 115 ntBASIC0.75□□□□□ -2.29
KLHL28Q9NXS3 RNU6-307P-201ENST00000516743 106 ntBASIC0.75□□□□□ -2.29
KLHL28Q9NXS3 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.75□□□□□ -2.29
KLHL28Q9NXS3 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.75□□□□□ -2.29
KLHL28Q9NXS3 PRELID3BP2-201ENST00000605362 201 ntBASIC0.75□□□□□ -2.29
KLHL28Q9NXS3 AC242852.1-201ENST00000612151 96 ntBASIC0.75□□□□□ -2.29
KLHL28Q9NXS3 AC244015.1-201ENST00000622301 99 ntBASIC0.75□□□□□ -2.29
KLHL28Q9NXS3 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.75□□□□□ -2.29
KLHL28Q9NXS3 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.74□□□□□ -2.29
KLHL28Q9NXS3 Y_RNA.101-201ENST00000363154 102 ntBASIC0.74□□□□□ -2.29
KLHL28Q9NXS3 Y_RNA.112-201ENST00000363250 102 ntBASIC0.74□□□□□ -2.29
KLHL28Q9NXS3 SNORD115-30-201ENST00000364117 82 ntBASIC0.74□□□□□ -2.29
KLHL28Q9NXS3 RNU4-41P-201ENST00000364426 143 ntBASIC0.74□□□□□ -2.29
KLHL28Q9NXS3 MIR100-201ENST00000385259 80 ntBASIC0.74□□□□□ -2.29
KLHL28Q9NXS3 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.74□□□□□ -2.29
KLHL28Q9NXS3 RNA5SP511-201ENST00000410487 115 ntBASIC0.74□□□□□ -2.29
KLHL28Q9NXS3 LINC01399-202ENST00000458450 244 ntBASIC0.74□□□□□ -2.29
KLHL28Q9NXS3 snoU13.25-201ENST00000458945 104 ntBASIC0.74□□□□□ -2.29
KLHL28Q9NXS3 RNU6-470P-201ENST00000515954 104 ntBASIC0.74□□□□□ -2.29
KLHL28Q9NXS3 RNU6-1278P-201ENST00000516130 107 ntBASIC0.74□□□□□ -2.29
KLHL28Q9NXS3 RNU6-966P-201ENST00000516479 104 ntBASIC0.74□□□□□ -2.29
KLHL28Q9NXS3 RNU6-1096P-201ENST00000517089 102 ntBASIC0.74□□□□□ -2.29
KLHL28Q9NXS3 RNU2-12P-201ENST00000517216 168 ntBASIC0.74□□□□□ -2.29
KLHL28Q9NXS3 AC004832.4-201ENST00000608952 331 ntBASIC0.74□□□□□ -2.29
KLHL28Q9NXS3 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.74□□□□□ -2.29
KLHL28Q9NXS3 AC011476.5-201ENST00000615594 130 ntBASIC0.74□□□□□ -2.29
KLHL28Q9NXS3 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.74□□□□□ -2.29
KLHL28Q9NXS3 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 Y_RNA.172-201ENST00000363765 102 ntBASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 Y_RNA.361-201ENST00000365515 120 ntBASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 RNU6-708P-201ENST00000384217 107 ntBASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 MIR526A1-201ENST00000384897 85 ntBASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 MIR625-201ENST00000385047 85 ntBASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 MIR146A-201ENST00000385201 99 ntBASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 MIR942-201ENST00000401111 86 ntBASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 RPS3AP1-201ENST00000413190 320 ntBASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 AC138393.2-201ENST00000414742 246 ntBASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 AC104332.1-201ENST00000440471 797 ntBASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 RBMX2P4-201ENST00000441256 376 ntBASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 AL049830.1-201ENST00000468034 425 ntBASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 RNU6-559P-201ENST00000516151 98 ntBASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 MIR5690-201ENST00000583739 73 ntBASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 AL096861.1-201ENST00000610899 123 ntBASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 AC108706.1-201ENST00000611053 297 ntBASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 AL355073.2-201ENST00000612106 557 ntBASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 PVT1_3.1-201ENST00000620853 95 ntBASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 MTND4LP32-201ENST00000636111 270 ntBASIC0.73□□□□□ -2.29
KLHL28Q9NXS3 SNORD116-13-201ENST00000384408 92 ntBASIC0.72□□□□□ -2.29
KLHL28Q9NXS3 SNORA75.2-201ENST00000391138 150 ntBASIC0.72□□□□□ -2.29
KLHL28Q9NXS3 SNORA75.3-201ENST00000391231 150 ntBASIC0.72□□□□□ -2.29
KLHL28Q9NXS3 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.72□□□□□ -2.29
KLHL28Q9NXS3 AL354751.2-201ENST00000415471 210 ntBASIC0.72□□□□□ -2.29
KLHL28Q9NXS3 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 204.2 ms