Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.85□□□□□ -2.11
DDX4Q9NQI0 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.84□□□□□ -2.11
DDX4Q9NQI0 RNU6-514P-201ENST00000384208 107 ntBASIC1.84□□□□□ -2.11
DDX4Q9NQI0 MIR520A-201ENST00000384862 85 ntBASIC1.84□□□□□ -2.11
DDX4Q9NQI0 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
DDX4Q9NQI0 RNU6-1203P-201ENST00000410703 110 ntBASIC1.84□□□□□ -2.11
DDX4Q9NQI0 AC098869.1-201ENST00000481627 292 ntBASIC1.84□□□□□ -2.11
DDX4Q9NQI0 RPL36AP21-201ENST00000490372 323 ntBASIC1.84□□□□□ -2.11
DDX4Q9NQI0 RNU2-31P-201ENST00000516954 155 ntBASIC1.84□□□□□ -2.11
DDX4Q9NQI0 RNU7-128P-201ENST00000517247 62 ntBASIC1.84□□□□□ -2.11
DDX4Q9NQI0 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.84□□□□□ -2.11
DDX4Q9NQI0 AC084364.2-201ENST00000546924 395 ntBASIC1.84□□□□□ -2.11
DDX4Q9NQI0 MIR4713-201ENST00000582691 75 ntBASIC1.84□□□□□ -2.11
DDX4Q9NQI0 DEFB117-201ENST00000602356 141 ntBASIC1.84□□□□□ -2.11
DDX4Q9NQI0 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.84□□□□□ -2.11
DDX4Q9NQI0 BX248123.2-201ENST00000606318 124 ntBASIC1.84□□□□□ -2.11
DDX4Q9NQI0 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.83□□□□□ -2.12
DDX4Q9NQI0 SNORA25.1-201ENST00000362326 128 ntBASIC1.83□□□□□ -2.12
DDX4Q9NQI0 RNU6-117P-201ENST00000365415 107 ntBASIC1.83□□□□□ -2.12
DDX4Q9NQI0 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.83□□□□□ -2.12
DDX4Q9NQI0 Y_RNA.456-201ENST00000384232 111 ntBASIC1.83□□□□□ -2.12
DDX4Q9NQI0 Y_RNA.461-201ENST00000384263 103 ntBASIC1.83□□□□□ -2.12
DDX4Q9NQI0 Y_RNA.541-201ENST00000384640 113 ntBASIC1.83□□□□□ -2.12
DDX4Q9NQI0 RNU6-376P-201ENST00000384731 106 ntBASIC1.83□□□□□ -2.12
DDX4Q9NQI0 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
DDX4Q9NQI0 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.83□□□□□ -2.12
DDX4Q9NQI0 AC245047.4-201ENST00000433189 144 ntBASIC1.83□□□□□ -2.12
DDX4Q9NQI0 HMGN1P10-201ENST00000474557 553 ntBASIC1.83□□□□□ -2.12
DDX4Q9NQI0 RNU6-1337P-201ENST00000516525 95 ntBASIC1.83□□□□□ -2.12
DDX4Q9NQI0 U6.108-201ENST00000637764 58 ntBASIC1.83□□□□□ -2.12
DDX4Q9NQI0 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
DDX4Q9NQI0 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
DDX4Q9NQI0 SNORA33-201ENST00000363664 130 ntBASIC1.82□□□□□ -2.12
DDX4Q9NQI0 SNORA63D-201ENST00000364359 132 ntBASIC1.82□□□□□ -2.12
DDX4Q9NQI0 Y_RNA.368-201ENST00000365547 113 ntBASIC1.82□□□□□ -2.12
DDX4Q9NQI0 MIR215-201ENST00000384858 110 ntBASIC1.82□□□□□ -2.12
DDX4Q9NQI0 MIR520G-201ENST00000385064 90 ntBASIC1.82□□□□□ -2.12
DDX4Q9NQI0 RNU6-855P-201ENST00000410395 104 ntBASIC1.82□□□□□ -2.12
DDX4Q9NQI0 AC009310.1-201ENST00000414414 451 ntBASIC1.82□□□□□ -2.12
DDX4Q9NQI0 HSPE1P21-201ENST00000438283 308 ntBASIC1.82□□□□□ -2.12
DDX4Q9NQI0 TRMT112P2-201ENST00000512910 132 ntBASIC1.82□□□□□ -2.12
DDX4Q9NQI0 Y_RNA.673-201ENST00000516306 88 ntBASIC1.82□□□□□ -2.12
DDX4Q9NQI0 RNA5SP481-201ENST00000516814 122 ntBASIC1.82□□□□□ -2.12
DDX4Q9NQI0 SNORA44.1-201ENST00000517031 108 ntBASIC1.82□□□□□ -2.12
DDX4Q9NQI0 RNU6-570P-201ENST00000517051 105 ntBASIC1.82□□□□□ -2.12
DDX4Q9NQI0 AC024614.2-201ENST00000577584 372 ntBASIC1.82□□□□□ -2.12
DDX4Q9NQI0 AC073413.2-201ENST00000604332 360 ntBASIC1.82□□□□□ -2.12
DDX4Q9NQI0 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
DDX4Q9NQI0 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.82□□□□□ -2.12
DDX4Q9NQI0 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
DDX4Q9NQI0 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.82□□□□□ -2.12
DDX4Q9NQI0 AC018630.2-201ENST00000534866 2403 ntBASIC1.81□□□□□ -2.12
DDX4Q9NQI0 MIR335-201ENST00000362173 94 ntBASIC1.81□□□□□ -2.12
DDX4Q9NQI0 RNU6-112P-201ENST00000363599 104 ntBASIC1.81□□□□□ -2.12
DDX4Q9NQI0 Y_RNA.226-201ENST00000364337 114 ntBASIC1.81□□□□□ -2.12
DDX4Q9NQI0 Y_RNA.376-201ENST00000365638 108 ntBASIC1.81□□□□□ -2.12
DDX4Q9NQI0 Y_RNA.512-201ENST00000384518 102 ntBASIC1.81□□□□□ -2.12
DDX4Q9NQI0 Y_RNA.518-201ENST00000384552 113 ntBASIC1.81□□□□□ -2.12
DDX4Q9NQI0 RNU6-950P-201ENST00000384651 107 ntBASIC1.81□□□□□ -2.12
DDX4Q9NQI0 SNORA67.6-201ENST00000391093 99 ntBASIC1.81□□□□□ -2.12
DDX4Q9NQI0 RNA5SP100-201ENST00000410903 110 ntBASIC1.81□□□□□ -2.12
DDX4Q9NQI0 RNA5SP59-201ENST00000410922 110 ntBASIC1.81□□□□□ -2.12
DDX4Q9NQI0 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.81□□□□□ -2.12
DDX4Q9NQI0 AL163195.1-201ENST00000496941 348 ntBASIC1.81□□□□□ -2.12
DDX4Q9NQI0 SERF1AP1-201ENST00000514575 187 ntBASIC1.81□□□□□ -2.12
DDX4Q9NQI0 RNU6-1338P-201ENST00000516328 91 ntBASIC1.81□□□□□ -2.12
DDX4Q9NQI0 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.81□□□□□ -2.12
DDX4Q9NQI0 AL161670.1-201ENST00000554348 137 ntBASIC1.81□□□□□ -2.12
DDX4Q9NQI0 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.81□□□□□ -2.12
DDX4Q9NQI0 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.81□□□□□ -2.12
DDX4Q9NQI0 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.81□□□□□ -2.12
DDX4Q9NQI0 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
DDX4Q9NQI0 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.8□□□□□ -2.12
DDX4Q9NQI0 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
DDX4Q9NQI0 RNU4-80P-201ENST00000363200 141 ntBASIC1.8□□□□□ -2.12
DDX4Q9NQI0 Y_RNA.341-201ENST00000365341 102 ntBASIC1.8□□□□□ -2.12
DDX4Q9NQI0 Y_RNA.418-201ENST00000384029 102 ntBASIC1.8□□□□□ -2.12
DDX4Q9NQI0 RNU6-196P-201ENST00000384315 107 ntBASIC1.8□□□□□ -2.12
DDX4Q9NQI0 RNU2-7P-201ENST00000410794 178 ntBASIC1.8□□□□□ -2.12
DDX4Q9NQI0 AC004965.1-201ENST00000413033 213 ntBASIC1.8□□□□□ -2.12
DDX4Q9NQI0 MTCO1P5-201ENST00000433573 344 ntBASIC1.8□□□□□ -2.12
DDX4Q9NQI0 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.8□□□□□ -2.12
DDX4Q9NQI0 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.8□□□□□ -2.12
DDX4Q9NQI0 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.8□□□□□ -2.12
DDX4Q9NQI0 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.8□□□□□ -2.12
DDX4Q9NQI0 MIR3145-201ENST00000580727 82 ntBASIC1.8□□□□□ -2.12
DDX4Q9NQI0 AC010900.2-201ENST00000604508 210 ntBASIC1.8□□□□□ -2.12
DDX4Q9NQI0 MIR6079-201ENST00000635807 62 ntBASIC1.8□□□□□ -2.12
DDX4Q9NQI0 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.79□□□□□ -2.12
DDX4Q9NQI0 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.79□□□□□ -2.12
DDX4Q9NQI0 RNU6-296P-201ENST00000384608 107 ntBASIC1.79□□□□□ -2.12
DDX4Q9NQI0 MIR517C-201ENST00000385103 95 ntBASIC1.79□□□□□ -2.12
DDX4Q9NQI0 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC1.79□□□□□ -2.12
DDX4Q9NQI0 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.79□□□□□ -2.12
DDX4Q9NQI0 AL162725.1-201ENST00000435405 301 ntBASIC1.79□□□□□ -2.12
DDX4Q9NQI0 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.79□□□□□ -2.12
DDX4Q9NQI0 RNU6-191P-201ENST00000516295 94 ntBASIC1.79□□□□□ -2.12
DDX4Q9NQI0 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.79□□□□□ -2.12
DDX4Q9NQI0 AL512605.2-201ENST00000592972 256 ntBASIC1.79□□□□□ -2.12
DDX4Q9NQI0 AP001282.2-201ENST00000616149 309 ntBASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms