Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.53□□□□□ -2
PCIF1Q9H4Z3 AC021753.1-201ENST00000635724 168 ntBASIC2.53□□□□□ -2
PCIF1Q9H4Z3 MIR6079-201ENST00000635807 62 ntBASIC2.53□□□□□ -2
PCIF1Q9H4Z3 AC018630.2-201ENST00000534866 2403 ntBASIC2.53□□□□□ -2
PCIF1Q9H4Z3 AC080100.1-201ENST00000624239 5356 ntBASIC2.53□□□□□ -2.01
PCIF1Q9H4Z3 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
PCIF1Q9H4Z3 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.52□□□□□ -2.01
PCIF1Q9H4Z3 Y_RNA.23-201ENST00000362496 106 ntBASIC2.52□□□□□ -2.01
PCIF1Q9H4Z3 VTRNA1-1-201ENST00000363120 99 ntBASIC2.52□□□□□ -2.01
PCIF1Q9H4Z3 RNU6-804P-201ENST00000384286 107 ntBASIC2.52□□□□□ -2.01
PCIF1Q9H4Z3 RNU6-1135P-201ENST00000411083 103 ntBASIC2.52□□□□□ -2.01
PCIF1Q9H4Z3 SEPT7P4-201ENST00000437076 306 ntBASIC2.52□□□□□ -2.01
PCIF1Q9H4Z3 MTND2P29-201ENST00000438595 412 ntBASIC2.52□□□□□ -2.01
PCIF1Q9H4Z3 AL163195.1-201ENST00000496941 348 ntBASIC2.52□□□□□ -2.01
PCIF1Q9H4Z3 AC024995.1-201ENST00000523014 93 ntBASIC2.52□□□□□ -2.01
PCIF1Q9H4Z3 AC109810.1-201ENST00000534066 224 ntBASIC2.52□□□□□ -2.01
PCIF1Q9H4Z3 AC005786.1-201ENST00000588553 154 ntBASIC2.52□□□□□ -2.01
PCIF1Q9H4Z3 AL021707.8-201ENST00000609428 183 ntBASIC2.52□□□□□ -2.01
PCIF1Q9H4Z3 AC104465.1-201ENST00000611365 139 ntBASIC2.52□□□□□ -2.01
PCIF1Q9H4Z3 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.52□□□□□ -2.01
PCIF1Q9H4Z3 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
PCIF1Q9H4Z3 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.52□□□□□ -2.01
PCIF1Q9H4Z3 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
PCIF1Q9H4Z3 ZNF271P-202ENST00000465539 1970 ntBASIC2.51□□□□□ -2.01
PCIF1Q9H4Z3 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.51□□□□□ -2.01
PCIF1Q9H4Z3 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
PCIF1Q9H4Z3 RNU6-312P-201ENST00000364629 107 ntBASIC2.51□□□□□ -2.01
PCIF1Q9H4Z3 RNU6-1080P-201ENST00000383982 107 ntBASIC2.51□□□□□ -2.01
PCIF1Q9H4Z3 RNU6-301P-201ENST00000384277 107 ntBASIC2.51□□□□□ -2.01
PCIF1Q9H4Z3 MIR518A2-201ENST00000384966 87 ntBASIC2.51□□□□□ -2.01
PCIF1Q9H4Z3 HMGN2P39-201ENST00000398005 273 ntBASIC2.51□□□□□ -2.01
PCIF1Q9H4Z3 AL606845.1-201ENST00000404881 255 ntBASIC2.51□□□□□ -2.01
PCIF1Q9H4Z3 RN7SL429P-201ENST00000479090 223 ntBASIC2.51□□□□□ -2.01
PCIF1Q9H4Z3 RN7SL489P-201ENST00000486185 223 ntBASIC2.51□□□□□ -2.01
PCIF1Q9H4Z3 RN7SL327P-201ENST00000488659 223 ntBASIC2.51□□□□□ -2.01
PCIF1Q9H4Z3 RNA5SP24-201ENST00000516478 95 ntBASIC2.51□□□□□ -2.01
PCIF1Q9H4Z3 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.51□□□□□ -2.01
PCIF1Q9H4Z3 MIR4435-1-201ENST00000582552 80 ntBASIC2.51□□□□□ -2.01
PCIF1Q9H4Z3 AL137847.3-201ENST00000611521 109 ntBASIC2.51□□□□□ -2.01
PCIF1Q9H4Z3 RN7SL853P-201ENST00000617250 223 ntBASIC2.51□□□□□ -2.01
PCIF1Q9H4Z3 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.51□□□□□ -2.01
PCIF1Q9H4Z3 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.51□□□□□ -2.01
PCIF1Q9H4Z3 RNU6-774P-201ENST00000363238 107 ntBASIC2.5□□□□□ -2.01
PCIF1Q9H4Z3 Y_RNA.170-201ENST00000363746 110 ntBASIC2.5□□□□□ -2.01
PCIF1Q9H4Z3 RNU6-394P-201ENST00000410735 107 ntBASIC2.5□□□□□ -2.01
PCIF1Q9H4Z3 HMGN2P35-201ENST00000412164 270 ntBASIC2.5□□□□□ -2.01
PCIF1Q9H4Z3 AC008413.1-201ENST00000511864 177 ntBASIC2.5□□□□□ -2.01
PCIF1Q9H4Z3 RNU6-561P-201ENST00000516222 102 ntBASIC2.5□□□□□ -2.01
PCIF1Q9H4Z3 AC012640.5-201ENST00000623897 319 ntBASIC2.5□□□□□ -2.01
PCIF1Q9H4Z3 Y_RNA.8-201ENST00000362353 102 ntBASIC2.49□□□□□ -2.01
PCIF1Q9H4Z3 Y_RNA.796-201ENST00000364268 102 ntBASIC2.49□□□□□ -2.01
PCIF1Q9H4Z3 Y_RNA.267-201ENST00000364679 109 ntBASIC2.49□□□□□ -2.01
PCIF1Q9H4Z3 Y_RNA.799-201ENST00000364992 102 ntBASIC2.49□□□□□ -2.01
PCIF1Q9H4Z3 RNU11-3P-201ENST00000391111 133 ntBASIC2.49□□□□□ -2.01
PCIF1Q9H4Z3 Y_RNA.621-201ENST00000411065 96 ntBASIC2.49□□□□□ -2.01
PCIF1Q9H4Z3 AL606517.2-201ENST00000442855 241 ntBASIC2.49□□□□□ -2.01
PCIF1Q9H4Z3 AC233266.1-201ENST00000454518 96 ntBASIC2.49□□□□□ -2.01
PCIF1Q9H4Z3 RNU6-341P-201ENST00000516973 96 ntBASIC2.49□□□□□ -2.01
PCIF1Q9H4Z3 MTND5P41-201ENST00000517498 206 ntBASIC2.49□□□□□ -2.01
PCIF1Q9H4Z3 RPL23AP91-201ENST00000569211 455 ntBASIC2.49□□□□□ -2.01
PCIF1Q9H4Z3 MIR3144-201ENST00000579460 79 ntBASIC2.49□□□□□ -2.01
PCIF1Q9H4Z3 MIR5007-201ENST00000583098 95 ntBASIC2.49□□□□□ -2.01
PCIF1Q9H4Z3 AC242852.1-201ENST00000612151 96 ntBASIC2.49□□□□□ -2.01
PCIF1Q9H4Z3 AC244015.1-201ENST00000622301 99 ntBASIC2.49□□□□□ -2.01
PCIF1Q9H4Z3 MIR6766-201ENST00000622641 72 ntBASIC2.49□□□□□ -2.01
PCIF1Q9H4Z3 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
PCIF1Q9H4Z3 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.48□□□□□ -2.01
PCIF1Q9H4Z3 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
PCIF1Q9H4Z3 SNORA3A-201ENST00000364113 130 ntBASIC2.48□□□□□ -2.01
PCIF1Q9H4Z3 Y_RNA.272-201ENST00000364696 102 ntBASIC2.48□□□□□ -2.01
PCIF1Q9H4Z3 RNU6-1228P-201ENST00000391014 107 ntBASIC2.48□□□□□ -2.01
PCIF1Q9H4Z3 RNU11-5P-201ENST00000391216 129 ntBASIC2.48□□□□□ -2.01
PCIF1Q9H4Z3 RNA5SP496-201ENST00000391240 109 ntBASIC2.48□□□□□ -2.01
PCIF1Q9H4Z3 MIR548M-201ENST00000408260 86 ntBASIC2.48□□□□□ -2.01
PCIF1Q9H4Z3 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.48□□□□□ -2.01
PCIF1Q9H4Z3 SNORA11.4-201ENST00000408823 129 ntBASIC2.48□□□□□ -2.01
PCIF1Q9H4Z3 RNU4-53P-201ENST00000410828 140 ntBASIC2.48□□□□□ -2.01
PCIF1Q9H4Z3 HMGN2P3-201ENST00000433603 273 ntBASIC2.48□□□□□ -2.01
PCIF1Q9H4Z3 HMGN2P5-201ENST00000436882 273 ntBASIC2.48□□□□□ -2.01
PCIF1Q9H4Z3 SNORD11-201ENST00000459124 84 ntBASIC2.48□□□□□ -2.01
PCIF1Q9H4Z3 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.48□□□□□ -2.01
PCIF1Q9H4Z3 AC022217.4-201ENST00000604389 163 ntBASIC2.48□□□□□ -2.01
PCIF1Q9H4Z3 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
PCIF1Q9H4Z3 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
PCIF1Q9H4Z3 RNU6-1209P-201ENST00000363655 107 ntBASIC2.47□□□□□ -2.01
PCIF1Q9H4Z3 RNU4-84P-201ENST00000364200 139 ntBASIC2.47□□□□□ -2.01
PCIF1Q9H4Z3 Y_RNA.253-201ENST00000364562 112 ntBASIC2.47□□□□□ -2.01
PCIF1Q9H4Z3 Y_RNA.398-201ENST00000383952 99 ntBASIC2.47□□□□□ -2.01
PCIF1Q9H4Z3 RNU1-52P-201ENST00000384190 164 ntBASIC2.47□□□□□ -2.01
PCIF1Q9H4Z3 RNA5SP270-201ENST00000411361 118 ntBASIC2.47□□□□□ -2.01
PCIF1Q9H4Z3 AC245047.4-201ENST00000433189 144 ntBASIC2.47□□□□□ -2.01
PCIF1Q9H4Z3 AC005840.1-201ENST00000498412 377 ntBASIC2.47□□□□□ -2.01
PCIF1Q9H4Z3 MIR5094-201ENST00000578766 85 ntBASIC2.47□□□□□ -2.01
PCIF1Q9H4Z3 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.47□□□□□ -2.01
PCIF1Q9H4Z3 AL049861.1-201ENST00000603130 150 ntBASIC2.47□□□□□ -2.01
PCIF1Q9H4Z3 AC069114.2-201ENST00000604699 304 ntBASIC2.47□□□□□ -2.01
PCIF1Q9H4Z3 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.47□□□□□ -2.01
PCIF1Q9H4Z3 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.01
PCIF1Q9H4Z3 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.46□□□□□ -2.02
PCIF1Q9H4Z3 SNORA1B-201ENST00000362535 133 ntBASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms