Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
ZKSCAN3Q9BRR0 AL355596.1-201ENST00000565399 3996 ntBASIC3.22□□□□□ -1.89
ZKSCAN3Q9BRR0 Y_RNA.617-201ENST00000410920 90 ntBASIC3.22□□□□□ -1.89
ZKSCAN3Q9BRR0 AC018634.1-201ENST00000437554 401 ntBASIC3.22□□□□□ -1.89
ZKSCAN3Q9BRR0 AL353689.1-201ENST00000438895 199 ntBASIC3.22□□□□□ -1.89
ZKSCAN3Q9BRR0 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.22□□□□□ -1.89
ZKSCAN3Q9BRR0 RPS26P45-201ENST00000471748 340 ntBASIC3.22□□□□□ -1.89
ZKSCAN3Q9BRR0 NDUFA4P2-201ENST00000489989 244 ntBASIC3.22□□□□□ -1.89
ZKSCAN3Q9BRR0 ELOCP29-201ENST00000588193 334 ntBASIC3.22□□□□□ -1.89
ZKSCAN3Q9BRR0 AC108081.1-201ENST00000604358 221 ntBASIC3.22□□□□□ -1.89
ZKSCAN3Q9BRR0 AL359075.3-201ENST00000613288 217 ntBASIC3.22□□□□□ -1.89
ZKSCAN3Q9BRR0 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
ZKSCAN3Q9BRR0 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
ZKSCAN3Q9BRR0 RNU6-309P-201ENST00000364573 106 ntBASIC3.21□□□□□ -1.9
ZKSCAN3Q9BRR0 SNRPGP10-201ENST00000432323 225 ntBASIC3.21□□□□□ -1.9
ZKSCAN3Q9BRR0 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC3.21□□□□□ -1.9
ZKSCAN3Q9BRR0 MRPS17P9-201ENST00000511924 393 ntBASIC3.21□□□□□ -1.9
ZKSCAN3Q9BRR0 RNU7-128P-201ENST00000517247 62 ntBASIC3.21□□□□□ -1.9
ZKSCAN3Q9BRR0 MIR4319-201ENST00000577285 85 ntBASIC3.21□□□□□ -1.9
ZKSCAN3Q9BRR0 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.21□□□□□ -1.9
ZKSCAN3Q9BRR0 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
ZKSCAN3Q9BRR0 AC092435.3-201ENST00000565538 3654 ntBASIC3.2□□□□□ -1.9
ZKSCAN3Q9BRR0 Y_RNA.242-201ENST00000364473 110 ntBASIC3.2□□□□□ -1.9
ZKSCAN3Q9BRR0 Y_RNA.253-201ENST00000364562 112 ntBASIC3.2□□□□□ -1.9
ZKSCAN3Q9BRR0 SNORA22-201ENST00000383907 134 ntBASIC3.2□□□□□ -1.9
ZKSCAN3Q9BRR0 AL031121.1-201ENST00000406553 254 ntBASIC3.2□□□□□ -1.9
ZKSCAN3Q9BRR0 Y_RNA.630-201ENST00000411370 108 ntBASIC3.2□□□□□ -1.9
ZKSCAN3Q9BRR0 AC233266.1-201ENST00000454518 96 ntBASIC3.2□□□□□ -1.9
ZKSCAN3Q9BRR0 SNORD109B-201ENST00000458961 67 ntBASIC3.2□□□□□ -1.9
ZKSCAN3Q9BRR0 SNORD109A-201ENST00000459128 67 ntBASIC3.2□□□□□ -1.9
ZKSCAN3Q9BRR0 RNU6-667P-201ENST00000517186 102 ntBASIC3.2□□□□□ -1.9
ZKSCAN3Q9BRR0 AL353149.1-201ENST00000610667 244 ntBASIC3.2□□□□□ -1.9
ZKSCAN3Q9BRR0 AC242852.1-201ENST00000612151 96 ntBASIC3.2□□□□□ -1.9
ZKSCAN3Q9BRR0 AC244015.1-201ENST00000622301 99 ntBASIC3.2□□□□□ -1.9
ZKSCAN3Q9BRR0 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.2□□□□□ -1.9
ZKSCAN3Q9BRR0 AC108206.1-201ENST00000570186 4159 ntBASIC3.19□□□□□ -1.9
ZKSCAN3Q9BRR0 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
ZKSCAN3Q9BRR0 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.19□□□□□ -1.9
ZKSCAN3Q9BRR0 MIR26A1-201ENST00000362205 77 ntBASIC3.19□□□□□ -1.9
ZKSCAN3Q9BRR0 RNU6-1292P-201ENST00000383856 107 ntBASIC3.19□□□□□ -1.9
ZKSCAN3Q9BRR0 MIR592-201ENST00000384959 97 ntBASIC3.19□□□□□ -1.9
ZKSCAN3Q9BRR0 MIR548A3-201ENST00000385297 97 ntBASIC3.19□□□□□ -1.9
ZKSCAN3Q9BRR0 AF228730.3-201ENST00000436691 102 ntBASIC3.19□□□□□ -1.9
ZKSCAN3Q9BRR0 RNU6-1291P-201ENST00000516591 104 ntBASIC3.19□□□□□ -1.9
ZKSCAN3Q9BRR0 RNU6-341P-201ENST00000516973 96 ntBASIC3.19□□□□□ -1.9
ZKSCAN3Q9BRR0 AL358944.1-201ENST00000528537 144 ntBASIC3.19□□□□□ -1.9
ZKSCAN3Q9BRR0 MIR3129-201ENST00000581095 76 ntBASIC3.19□□□□□ -1.9
ZKSCAN3Q9BRR0 AC087685.1-201ENST00000587507 141 ntBASIC3.19□□□□□ -1.9
ZKSCAN3Q9BRR0 AL022345.2-201ENST00000606307 135 ntBASIC3.19□□□□□ -1.9
ZKSCAN3Q9BRR0 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.19□□□□□ -1.9
ZKSCAN3Q9BRR0 MIR6079-201ENST00000635807 62 ntBASIC3.19□□□□□ -1.9
ZKSCAN3Q9BRR0 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.19□□□□□ -1.9
ZKSCAN3Q9BRR0 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
ZKSCAN3Q9BRR0 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.19□□□□□ -1.9
ZKSCAN3Q9BRR0 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
ZKSCAN3Q9BRR0 Y_RNA.346-201ENST00000365385 112 ntBASIC3.18□□□□□ -1.9
ZKSCAN3Q9BRR0 SNORD24-201ENST00000383884 75 ntBASIC3.18□□□□□ -1.9
ZKSCAN3Q9BRR0 RNA5SP21-201ENST00000410917 96 ntBASIC3.18□□□□□ -1.9
ZKSCAN3Q9BRR0 SRIP3-201ENST00000413200 219 ntBASIC3.18□□□□□ -1.9
ZKSCAN3Q9BRR0 AC063976.4-201ENST00000421971 163 ntBASIC3.18□□□□□ -1.9
ZKSCAN3Q9BRR0 RNU6-1041P-201ENST00000516254 102 ntBASIC3.18□□□□□ -1.9
ZKSCAN3Q9BRR0 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.18□□□□□ -1.9
ZKSCAN3Q9BRR0 AC008507.4-201ENST00000585464 127 ntBASIC3.18□□□□□ -1.9
ZKSCAN3Q9BRR0 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.18□□□□□ -1.9
ZKSCAN3Q9BRR0 AL121890.5-201ENST00000620848 304 ntBASIC3.18□□□□□ -1.9
ZKSCAN3Q9BRR0 MIR338-201ENST00000636369 67 ntBASIC3.18□□□□□ -1.9
ZKSCAN3Q9BRR0 AC008264.2-201ENST00000610193 3731 ntBASIC3.18□□□□□ -1.9
ZKSCAN3Q9BRR0 AL136360.1-201ENST00000503377 1900 ntBASIC3.17□□□□□ -1.9
ZKSCAN3Q9BRR0 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.17□□□□□ -1.9
ZKSCAN3Q9BRR0 AC062016.1-201ENST00000355719 319 ntBASIC3.17□□□□□ -1.9
ZKSCAN3Q9BRR0 SNORD21-201ENST00000383953 95 ntBASIC3.17□□□□□ -1.9
ZKSCAN3Q9BRR0 SNORD116-21-201ENST00000384507 92 ntBASIC3.17□□□□□ -1.9
ZKSCAN3Q9BRR0 SNORA12.1-201ENST00000390873 148 ntBASIC3.17□□□□□ -1.9
ZKSCAN3Q9BRR0 RNU6-220P-201ENST00000390919 107 ntBASIC3.17□□□□□ -1.9
ZKSCAN3Q9BRR0 EDDM3CP-201ENST00000415977 425 ntBASIC3.17□□□□□ -1.9
ZKSCAN3Q9BRR0 AC003685.2-201ENST00000422795 395 ntBASIC3.17□□□□□ -1.9
ZKSCAN3Q9BRR0 RNA5SP385-201ENST00000515947 110 ntBASIC3.17□□□□□ -1.9
ZKSCAN3Q9BRR0 RN7SKP19-201ENST00000516016 252 ntBASIC3.17□□□□□ -1.9
ZKSCAN3Q9BRR0 RNU1-142P-201ENST00000516682 145 ntBASIC3.17□□□□□ -1.9
ZKSCAN3Q9BRR0 Y_RNA.714-201ENST00000517065 90 ntBASIC3.17□□□□□ -1.9
ZKSCAN3Q9BRR0 MIR3616-201ENST00000584070 92 ntBASIC3.17□□□□□ -1.9
ZKSCAN3Q9BRR0 AC004832.5-201ENST00000608677 401 ntBASIC3.17□□□□□ -1.9
ZKSCAN3Q9BRR0 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
ZKSCAN3Q9BRR0 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.17□□□□□ -1.9
ZKSCAN3Q9BRR0 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
ZKSCAN3Q9BRR0 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.16□□□□□ -1.9
ZKSCAN3Q9BRR0 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.16□□□□□ -1.9
ZKSCAN3Q9BRR0 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC3.16□□□□□ -1.9
ZKSCAN3Q9BRR0 RNU6-888P-201ENST00000363010 101 ntBASIC3.16□□□□□ -1.9
ZKSCAN3Q9BRR0 Y_RNA.99-201ENST00000363138 105 ntBASIC3.16□□□□□ -1.9
ZKSCAN3Q9BRR0 RNU6-508P-201ENST00000363231 103 ntBASIC3.16□□□□□ -1.9
ZKSCAN3Q9BRR0 SNORA1-201ENST00000384107 130 ntBASIC3.16□□□□□ -1.9
ZKSCAN3Q9BRR0 MIRLET7F2-201ENST00000385277 83 ntBASIC3.16□□□□□ -1.9
ZKSCAN3Q9BRR0 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
ZKSCAN3Q9BRR0 RNA5SP467-201ENST00000391274 118 ntBASIC3.16□□□□□ -1.9
ZKSCAN3Q9BRR0 AC018868.1-201ENST00000491307 315 ntBASIC3.16□□□□□ -1.9
ZKSCAN3Q9BRR0 RNU6-781P-201ENST00000516377 101 ntBASIC3.16□□□□□ -1.9
ZKSCAN3Q9BRR0 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.16□□□□□ -1.9
ZKSCAN3Q9BRR0 MIR3605-201ENST00000583214 100 ntBASIC3.16□□□□□ -1.9
ZKSCAN3Q9BRR0 FAM35CP-201ENST00000554755 2470 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 1226 ms