Protein–RNA interactions for Protein: Q9BQ90

KLHDC3, Kelch domain-containing protein 3, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHDC3Q9BQ90 SNORA31.2-201ENST00000516019 134 ntBASIC0.91□□□□□ -2.26
KLHDC3Q9BQ90 SNORD116-28-201ENST00000516123 91 ntBASIC0.91□□□□□ -2.26
KLHDC3Q9BQ90 RNU6-699P-201ENST00000517081 110 ntBASIC0.91□□□□□ -2.26
KLHDC3Q9BQ90 Y_RNA.718-201ENST00000517110 102 ntBASIC0.91□□□□□ -2.26
KLHDC3Q9BQ90 MIR4659A-201ENST00000580269 81 ntBASIC0.91□□□□□ -2.26
KLHDC3Q9BQ90 MIR4781-201ENST00000585250 76 ntBASIC0.91□□□□□ -2.26
KLHDC3Q9BQ90 VN1R91P-201ENST00000594377 169 ntBASIC0.91□□□□□ -2.26
KLHDC3Q9BQ90 AC120024.3-201ENST00000603167 156 ntBASIC0.91□□□□□ -2.26
KLHDC3Q9BQ90 AC027279.3-201ENST00000625055 122 ntBASIC0.91□□□□□ -2.26
KLHDC3Q9BQ90 Y_RNA.4-201ENST00000362333 112 ntBASIC0.9□□□□□ -2.27
KLHDC3Q9BQ90 Y_RNA.70-201ENST00000362886 110 ntBASIC0.9□□□□□ -2.27
KLHDC3Q9BQ90 RNU6-626P-201ENST00000363354 107 ntBASIC0.9□□□□□ -2.27
KLHDC3Q9BQ90 SNORA72.1-201ENST00000363485 129 ntBASIC0.9□□□□□ -2.27
KLHDC3Q9BQ90 RNU1-124P-201ENST00000363861 145 ntBASIC0.9□□□□□ -2.27
KLHDC3Q9BQ90 MIR222-201ENST00000384992 110 ntBASIC0.9□□□□□ -2.27
KLHDC3Q9BQ90 MTCO2P27-201ENST00000420740 428 ntBASIC0.9□□□□□ -2.27
KLHDC3Q9BQ90 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC0.9□□□□□ -2.27
KLHDC3Q9BQ90 RNU7-152P-201ENST00000458982 64 ntBASIC0.9□□□□□ -2.27
KLHDC3Q9BQ90 AC087343.1-201ENST00000477341 475 ntBASIC0.9□□□□□ -2.27
KLHDC3Q9BQ90 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.9□□□□□ -2.27
KLHDC3Q9BQ90 RNU6-155P-201ENST00000516347 100 ntBASIC0.9□□□□□ -2.27
KLHDC3Q9BQ90 SNORA70.22-201ENST00000517160 124 ntBASIC0.9□□□□□ -2.27
KLHDC3Q9BQ90 AC022616.4-201ENST00000522985 181 ntBASIC0.9□□□□□ -2.27
KLHDC3Q9BQ90 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.9□□□□□ -2.27
KLHDC3Q9BQ90 U6.92-201ENST00000636464 89 ntBASIC0.9□□□□□ -2.27
KLHDC3Q9BQ90 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.9□□□□□ -2.27
KLHDC3Q9BQ90 RNU4-79P-201ENST00000362764 141 ntBASIC0.89□□□□□ -2.27
KLHDC3Q9BQ90 Y_RNA.164-201ENST00000363709 102 ntBASIC0.89□□□□□ -2.27
KLHDC3Q9BQ90 RNU6-324P-201ENST00000363957 106 ntBASIC0.89□□□□□ -2.27
KLHDC3Q9BQ90 U8.5-201ENST00000364528 136 ntBASIC0.89□□□□□ -2.27
KLHDC3Q9BQ90 Y_RNA.428-201ENST00000384078 102 ntBASIC0.89□□□□□ -2.27
KLHDC3Q9BQ90 Y_RNA.446-201ENST00000384178 104 ntBASIC0.89□□□□□ -2.27
KLHDC3Q9BQ90 RNU6-163P-201ENST00000384396 106 ntBASIC0.89□□□□□ -2.27
KLHDC3Q9BQ90 RNU6-1199P-201ENST00000411249 104 ntBASIC0.89□□□□□ -2.27
KLHDC3Q9BQ90 AC245047.7-201ENST00000440265 293 ntBASIC0.89□□□□□ -2.27
KLHDC3Q9BQ90 AC104332.1-201ENST00000440471 797 ntBASIC0.89□□□□□ -2.27
KLHDC3Q9BQ90 CHEK2P4-201ENST00000450340 246 ntBASIC0.89□□□□□ -2.27
KLHDC3Q9BQ90 AC048334.1-201ENST00000477975 159 ntBASIC0.89□□□□□ -2.27
KLHDC3Q9BQ90 FGF7P4-201ENST00000509595 295 ntBASIC0.89□□□□□ -2.27
KLHDC3Q9BQ90 RNA5SP102-201ENST00000516865 106 ntBASIC0.89□□□□□ -2.27
KLHDC3Q9BQ90 AC136932.1-201ENST00000574771 208 ntBASIC0.89□□□□□ -2.27
KLHDC3Q9BQ90 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.89□□□□□ -2.27
KLHDC3Q9BQ90 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
KLHDC3Q9BQ90 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.88□□□□□ -2.27
KLHDC3Q9BQ90 SNORD68-201ENST00000363214 84 ntBASIC0.88□□□□□ -2.27
KLHDC3Q9BQ90 RNU6-1080P-201ENST00000383982 107 ntBASIC0.88□□□□□ -2.27
KLHDC3Q9BQ90 Y_RNA.463-201ENST00000384271 102 ntBASIC0.88□□□□□ -2.27
KLHDC3Q9BQ90 SNORD116-13-201ENST00000384408 92 ntBASIC0.88□□□□□ -2.27
KLHDC3Q9BQ90 SNORD12-201ENST00000391002 90 ntBASIC0.88□□□□□ -2.27
KLHDC3Q9BQ90 Y_RNA.621-201ENST00000411065 96 ntBASIC0.88□□□□□ -2.27
KLHDC3Q9BQ90 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.88□□□□□ -2.27
KLHDC3Q9BQ90 SNORD116.3-201ENST00000517176 78 ntBASIC0.88□□□□□ -2.27
KLHDC3Q9BQ90 RN7SKP295-201ENST00000517264 153 ntBASIC0.88□□□□□ -2.27
KLHDC3Q9BQ90 AC011604.1-201ENST00000545978 196 ntBASIC0.88□□□□□ -2.27
KLHDC3Q9BQ90 AC006600.1-201ENST00000572529 153 ntBASIC0.88□□□□□ -2.27
KLHDC3Q9BQ90 AL355375.2-201ENST00000574825 175 ntBASIC0.88□□□□□ -2.27
KLHDC3Q9BQ90 MIR3973-201ENST00000579824 107 ntBASIC0.88□□□□□ -2.27
KLHDC3Q9BQ90 MIR4762-201ENST00000585261 75 ntBASIC0.88□□□□□ -2.27
KLHDC3Q9BQ90 AC022441.3-201ENST00000605737 136 ntBASIC0.88□□□□□ -2.27
KLHDC3Q9BQ90 AC004832.4-201ENST00000608952 331 ntBASIC0.88□□□□□ -2.27
KLHDC3Q9BQ90 AC011476.5-201ENST00000615594 130 ntBASIC0.88□□□□□ -2.27
KLHDC3Q9BQ90 MIR4272-201ENST00000635924 64 ntBASIC0.88□□□□□ -2.27
KLHDC3Q9BQ90 Y_RNA.187-201ENST00000363918 113 ntBASIC0.87□□□□□ -2.27
KLHDC3Q9BQ90 MIR19B1-201ENST00000384829 87 ntBASIC0.87□□□□□ -2.27
KLHDC3Q9BQ90 MIR526A1-201ENST00000384897 85 ntBASIC0.87□□□□□ -2.27
KLHDC3Q9BQ90 MIR452-201ENST00000385020 85 ntBASIC0.87□□□□□ -2.27
KLHDC3Q9BQ90 RNU6-910P-201ENST00000390844 107 ntBASIC0.87□□□□□ -2.27
KLHDC3Q9BQ90 AC096644.2-201ENST00000429278 159 ntBASIC0.87□□□□□ -2.27
KLHDC3Q9BQ90 RPEP5-201ENST00000441137 268 ntBASIC0.87□□□□□ -2.27
KLHDC3Q9BQ90 U8.19-201ENST00000459095 133 ntBASIC0.87□□□□□ -2.27
KLHDC3Q9BQ90 Y_RNA.632-201ENST00000459189 102 ntBASIC0.87□□□□□ -2.27
KLHDC3Q9BQ90 RPL39P28-201ENST00000465655 155 ntBASIC0.87□□□□□ -2.27
KLHDC3Q9BQ90 RNU6-436P-201ENST00000516171 114 ntBASIC0.87□□□□□ -2.27
KLHDC3Q9BQ90 RNU6-947P-201ENST00000516264 106 ntBASIC0.87□□□□□ -2.27
KLHDC3Q9BQ90 SNORD111.1-201ENST00000516421 86 ntBASIC0.87□□□□□ -2.27
KLHDC3Q9BQ90 RNU6-1116P-201ENST00000517269 99 ntBASIC0.87□□□□□ -2.27
KLHDC3Q9BQ90 AC084781.2-201ENST00000615568 161 ntBASIC0.87□□□□□ -2.27
KLHDC3Q9BQ90 AL591926.4-201ENST00000616895 298 ntBASIC0.87□□□□□ -2.27
KLHDC3Q9BQ90 AL138825.1-201ENST00000618587 192 ntBASIC0.87□□□□□ -2.27
KLHDC3Q9BQ90 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
KLHDC3Q9BQ90 MIR373-201ENST00000362273 69 ntBASIC0.86□□□□□ -2.27
KLHDC3Q9BQ90 RNU6-1115P-201ENST00000362490 106 ntBASIC0.86□□□□□ -2.27
KLHDC3Q9BQ90 Y_RNA.146-201ENST00000363549 102 ntBASIC0.86□□□□□ -2.27
KLHDC3Q9BQ90 Y_RNA.336-201ENST00000365307 109 ntBASIC0.86□□□□□ -2.27
KLHDC3Q9BQ90 Y_RNA.570-201ENST00000384750 101 ntBASIC0.86□□□□□ -2.27
KLHDC3Q9BQ90 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.86□□□□□ -2.27
KLHDC3Q9BQ90 RNU6-710P-201ENST00000410424 105 ntBASIC0.86□□□□□ -2.27
KLHDC3Q9BQ90 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.86□□□□□ -2.27
KLHDC3Q9BQ90 POLR2J4-204ENST00000418424 324 ntBASIC0.86□□□□□ -2.27
KLHDC3Q9BQ90 AC093019.1-201ENST00000443135 252 ntBASIC0.86□□□□□ -2.27
KLHDC3Q9BQ90 RPS29P28-201ENST00000446439 141 ntBASIC0.86□□□□□ -2.27
KLHDC3Q9BQ90 LINC01399-202ENST00000458450 244 ntBASIC0.86□□□□□ -2.27
KLHDC3Q9BQ90 SNORD19B-201ENST00000459623 84 ntBASIC0.86□□□□□ -2.27
KLHDC3Q9BQ90 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.86□□□□□ -2.27
KLHDC3Q9BQ90 AC091951.2-201ENST00000500762 203 ntBASIC0.86□□□□□ -2.27
KLHDC3Q9BQ90 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.86□□□□□ -2.27
KLHDC3Q9BQ90 FAM106DP-201ENST00000586416 501 ntBASIC0.86□□□□□ -2.27
KLHDC3Q9BQ90 AC005972.2-201ENST00000604690 348 ntBASIC0.86□□□□□ -2.27
KLHDC3Q9BQ90 RBM11P1-201ENST00000604951 799 ntBASIC0.86□□□□□ -2.27
KLHDC3Q9BQ90 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 258.4 ms