Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNU6-136P-201ENST00000384663 107 ntBASIC1.57□□□□□ -2.16
USP28Q96RU2 RNU6-955P-201ENST00000410497 104 ntBASIC1.57□□□□□ -2.16
USP28Q96RU2 CST2P1-201ENST00000425770 87 ntBASIC1.57□□□□□ -2.16
USP28Q96RU2 AL163195.1-201ENST00000496941 348 ntBASIC1.57□□□□□ -2.16
USP28Q96RU2 RNU6-1146P-201ENST00000516282 102 ntBASIC1.57□□□□□ -2.16
USP28Q96RU2 AC084364.2-201ENST00000546924 395 ntBASIC1.57□□□□□ -2.16
USP28Q96RU2 AL137100.2-201ENST00000555786 315 ntBASIC1.57□□□□□ -2.16
USP28Q96RU2 MIR4298-201ENST00000584380 73 ntBASIC1.57□□□□□ -2.16
USP28Q96RU2 AC073413.2-201ENST00000604332 360 ntBASIC1.57□□□□□ -2.16
USP28Q96RU2 AC010900.2-201ENST00000604508 210 ntBASIC1.57□□□□□ -2.16
USP28Q96RU2 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
USP28Q96RU2 WWP1P1-201ENST00000466609 2769 ntBASIC1.57□□□□□ -2.16
USP28Q96RU2 Y_RNA.193-201ENST00000363979 102 ntBASIC1.56□□□□□ -2.16
USP28Q96RU2 RNU6-1048P-201ENST00000364054 107 ntBASIC1.56□□□□□ -2.16
USP28Q96RU2 RNU6-196P-201ENST00000384315 107 ntBASIC1.56□□□□□ -2.16
USP28Q96RU2 RNA5SP109-201ENST00000391010 116 ntBASIC1.56□□□□□ -2.16
USP28Q96RU2 MIR1302-6-201ENST00000408466 90 ntBASIC1.56□□□□□ -2.16
USP28Q96RU2 RNA5SP100-201ENST00000410903 110 ntBASIC1.56□□□□□ -2.16
USP28Q96RU2 RNA5SP59-201ENST00000410922 110 ntBASIC1.56□□□□□ -2.16
USP28Q96RU2 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.56□□□□□ -2.16
USP28Q96RU2 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.56□□□□□ -2.16
USP28Q96RU2 RNU6-191P-201ENST00000516295 94 ntBASIC1.56□□□□□ -2.16
USP28Q96RU2 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.56□□□□□ -2.16
USP28Q96RU2 RNU7-172P-201ENST00000517125 64 ntBASIC1.56□□□□□ -2.16
USP28Q96RU2 SUB1P4-201ENST00000566062 339 ntBASIC1.56□□□□□ -2.16
USP28Q96RU2 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.56□□□□□ -2.16
USP28Q96RU2 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.56□□□□□ -2.16
USP28Q96RU2 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.56□□□□□ -2.16
USP28Q96RU2 AC006435.5-201ENST00000624486 112 ntBASIC1.56□□□□□ -2.16
USP28Q96RU2 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
USP28Q96RU2 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.56□□□□□ -2.16
USP28Q96RU2 AC068700.1-201ENST00000565862 3754 ntBASIC1.55□□□□□ -2.16
USP28Q96RU2 Y_RNA.136-201ENST00000363444 102 ntBASIC1.55□□□□□ -2.16
USP28Q96RU2 RNU6-463P-201ENST00000384340 107 ntBASIC1.55□□□□□ -2.16
USP28Q96RU2 RNU6-296P-201ENST00000384608 107 ntBASIC1.55□□□□□ -2.16
USP28Q96RU2 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.55□□□□□ -2.16
USP28Q96RU2 RNU6-855P-201ENST00000410395 104 ntBASIC1.55□□□□□ -2.16
USP28Q96RU2 RNA5SP511-201ENST00000410487 115 ntBASIC1.55□□□□□ -2.16
USP28Q96RU2 RNU2-14P-201ENST00000411053 191 ntBASIC1.55□□□□□ -2.16
USP28Q96RU2 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.55□□□□□ -2.16
USP28Q96RU2 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.55□□□□□ -2.16
USP28Q96RU2 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.55□□□□□ -2.16
USP28Q96RU2 RPS27P1-201ENST00000450552 247 ntBASIC1.55□□□□□ -2.16
USP28Q96RU2 Y_RNA.668-201ENST00000516233 93 ntBASIC1.55□□□□□ -2.16
USP28Q96RU2 Y_RNA.680-201ENST00000516441 93 ntBASIC1.55□□□□□ -2.16
USP28Q96RU2 RNU2-31P-201ENST00000516954 155 ntBASIC1.55□□□□□ -2.16
USP28Q96RU2 RNA5SP437-201ENST00000517249 129 ntBASIC1.55□□□□□ -2.16
USP28Q96RU2 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.55□□□□□ -2.16
USP28Q96RU2 AC022217.4-201ENST00000604389 163 ntBASIC1.55□□□□□ -2.16
USP28Q96RU2 AC069114.2-201ENST00000604699 304 ntBASIC1.55□□□□□ -2.16
USP28Q96RU2 AC004832.4-201ENST00000608952 331 ntBASIC1.55□□□□□ -2.16
USP28Q96RU2 AL359075.3-201ENST00000613288 217 ntBASIC1.55□□□□□ -2.16
USP28Q96RU2 7SK.10-201ENST00000621414 298 ntBASIC1.55□□□□□ -2.16
USP28Q96RU2 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.54□□□□□ -2.16
USP28Q96RU2 RNU6-112P-201ENST00000363599 104 ntBASIC1.54□□□□□ -2.16
USP28Q96RU2 RNU6-271P-201ENST00000363858 105 ntBASIC1.54□□□□□ -2.16
USP28Q96RU2 Y_RNA.310-201ENST00000365063 113 ntBASIC1.54□□□□□ -2.16
USP28Q96RU2 SNORA4.2-201ENST00000365313 147 ntBASIC1.54□□□□□ -2.16
USP28Q96RU2 RNU6-662P-201ENST00000384253 104 ntBASIC1.54□□□□□ -2.16
USP28Q96RU2 MIR758-201ENST00000390227 88 ntBASIC1.54□□□□□ -2.16
USP28Q96RU2 RNA5SP323-201ENST00000391094 133 ntBASIC1.54□□□□□ -2.16
USP28Q96RU2 RNU6-651P-201ENST00000411040 105 ntBASIC1.54□□□□□ -2.16
USP28Q96RU2 AC091021.1-201ENST00000468051 388 ntBASIC1.54□□□□□ -2.16
USP28Q96RU2 AC091959.1-201ENST00000495857 238 ntBASIC1.54□□□□□ -2.16
USP28Q96RU2 MTND1P19-201ENST00000511780 315 ntBASIC1.54□□□□□ -2.16
USP28Q96RU2 SERF1AP1-201ENST00000514575 187 ntBASIC1.54□□□□□ -2.16
USP28Q96RU2 SNORA31.17-201ENST00000516953 127 ntBASIC1.54□□□□□ -2.16
USP28Q96RU2 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.54□□□□□ -2.16
USP28Q96RU2 MIR3684-201ENST00000579779 74 ntBASIC1.54□□□□□ -2.16
USP28Q96RU2 MIR3149-201ENST00000584629 83 ntBASIC1.54□□□□□ -2.16
USP28Q96RU2 AC012433.1-201ENST00000588916 398 ntBASIC1.54□□□□□ -2.16
USP28Q96RU2 MIR8074-201ENST00000615081 81 ntBASIC1.54□□□□□ -2.16
USP28Q96RU2 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.54□□□□□ -2.16
USP28Q96RU2 AL391987.6-201ENST00000305671 199 ntBASIC1.53□□□□□ -2.16
USP28Q96RU2 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
USP28Q96RU2 RNU1-17P-201ENST00000363022 152 ntBASIC1.53□□□□□ -2.16
USP28Q96RU2 RNU6-801P-201ENST00000364087 105 ntBASIC1.53□□□□□ -2.16
USP28Q96RU2 Y_RNA.518-201ENST00000384552 113 ntBASIC1.53□□□□□ -2.16
USP28Q96RU2 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
USP28Q96RU2 SNORA67.5-201ENST00000391036 107 ntBASIC1.53□□□□□ -2.16
USP28Q96RU2 SNORA17.3-201ENST00000391159 129 ntBASIC1.53□□□□□ -2.16
USP28Q96RU2 SNORA26.5-201ENST00000391215 123 ntBASIC1.53□□□□□ -2.16
USP28Q96RU2 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.53□□□□□ -2.16
USP28Q96RU2 RPS20P10-201ENST00000451209 253 ntBASIC1.53□□□□□ -2.16
USP28Q96RU2 RPS29P23-201ENST00000458635 123 ntBASIC1.53□□□□□ -2.16
USP28Q96RU2 RPS26P45-201ENST00000471748 340 ntBASIC1.53□□□□□ -2.16
USP28Q96RU2 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.16
USP28Q96RU2 RNU7-99P-201ENST00000516271 62 ntBASIC1.53□□□□□ -2.16
USP28Q96RU2 RNU1-142P-201ENST00000516682 145 ntBASIC1.53□□□□□ -2.16
USP28Q96RU2 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.53□□□□□ -2.16
USP28Q96RU2 MIR4422-201ENST00000581938 83 ntBASIC1.53□□□□□ -2.16
USP28Q96RU2 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.53□□□□□ -2.16
USP28Q96RU2 SNORA25.1-201ENST00000362326 128 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 SNORD114-7-201ENST00000362520 77 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 Y_RNA.117-201ENST00000363294 101 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 RNU6-457P-201ENST00000363999 107 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 RNU6-1019P-201ENST00000364424 107 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 Y_RNA.341-201ENST00000365341 102 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 RNU6-326P-201ENST00000365480 107 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 RNU6-439P-201ENST00000384188 106 ntBASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms