Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 U8.5-201ENST00000364528 136 ntBASIC0.85□□□□□ -2.27
VPS35Q96QK1 SNORD116-13-201ENST00000384408 92 ntBASIC0.85□□□□□ -2.27
VPS35Q96QK1 RNU6-310P-201ENST00000384655 107 ntBASIC0.85□□□□□ -2.27
VPS35Q96QK1 MIR499A-201ENST00000384903 122 ntBASIC0.85□□□□□ -2.27
VPS35Q96QK1 MIR146A-201ENST00000385201 99 ntBASIC0.85□□□□□ -2.27
VPS35Q96QK1 RNU6-192P-201ENST00000391253 100 ntBASIC0.85□□□□□ -2.27
VPS35Q96QK1 PDCL2P1-201ENST00000419302 352 ntBASIC0.85□□□□□ -2.27
VPS35Q96QK1 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC0.85□□□□□ -2.27
VPS35Q96QK1 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.85□□□□□ -2.27
VPS35Q96QK1 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.85□□□□□ -2.27
VPS35Q96QK1 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.85□□□□□ -2.27
VPS35Q96QK1 AC093019.1-201ENST00000443135 252 ntBASIC0.85□□□□□ -2.27
VPS35Q96QK1 FCF1P4-201ENST00000448326 183 ntBASIC0.85□□□□□ -2.27
VPS35Q96QK1 RNU7-21P-201ENST00000459430 62 ntBASIC0.85□□□□□ -2.27
VPS35Q96QK1 RNU7-4P-201ENST00000516961 62 ntBASIC0.85□□□□□ -2.27
VPS35Q96QK1 TPTEP1-208ENST00000636884 213 ntBASIC0.85□□□□□ -2.27
VPS35Q96QK1 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.85□□□□□ -2.27
VPS35Q96QK1 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.84□□□□□ -2.27
VPS35Q96QK1 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.84□□□□□ -2.27
VPS35Q96QK1 Y_RNA.101-201ENST00000363154 102 ntBASIC0.84□□□□□ -2.27
VPS35Q96QK1 SNORD114-22-201ENST00000365423 72 ntBASIC0.84□□□□□ -2.27
VPS35Q96QK1 RNU2-54P-201ENST00000410299 190 ntBASIC0.84□□□□□ -2.27
VPS35Q96QK1 snoU13.25-201ENST00000458945 104 ntBASIC0.84□□□□□ -2.27
VPS35Q96QK1 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.84□□□□□ -2.27
VPS35Q96QK1 PRELID3BP2-201ENST00000605362 201 ntBASIC0.84□□□□□ -2.27
VPS35Q96QK1 AC211469.2-201ENST00000605461 205 ntBASIC0.84□□□□□ -2.27
VPS35Q96QK1 AC240442.1-201ENST00000616055 283 ntBASIC0.84□□□□□ -2.27
VPS35Q96QK1 Y_RNA.191-201ENST00000363972 113 ntBASIC0.83□□□□□ -2.28
VPS35Q96QK1 RNU1-36P-201ENST00000365130 165 ntBASIC0.83□□□□□ -2.28
VPS35Q96QK1 RNU6-890P-201ENST00000384121 107 ntBASIC0.83□□□□□ -2.28
VPS35Q96QK1 RNY3P4-201ENST00000384428 101 ntBASIC0.83□□□□□ -2.28
VPS35Q96QK1 RNU6-876P-201ENST00000391295 104 ntBASIC0.83□□□□□ -2.28
VPS35Q96QK1 MIR942-201ENST00000401111 86 ntBASIC0.83□□□□□ -2.28
VPS35Q96QK1 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.83□□□□□ -2.28
VPS35Q96QK1 RNU7-90P-201ENST00000459216 62 ntBASIC0.83□□□□□ -2.28
VPS35Q96QK1 MTND4LP26-201ENST00000518144 282 ntBASIC0.83□□□□□ -2.28
VPS35Q96QK1 AC011604.1-201ENST00000545978 196 ntBASIC0.83□□□□□ -2.28
VPS35Q96QK1 MIR3192-201ENST00000584920 77 ntBASIC0.83□□□□□ -2.28
VPS35Q96QK1 MIR4762-201ENST00000585261 75 ntBASIC0.83□□□□□ -2.28
VPS35Q96QK1 AC013244.2-201ENST00000603396 103 ntBASIC0.83□□□□□ -2.28
VPS35Q96QK1 SNORD114-2-201ENST00000363953 78 ntBASIC0.82□□□□□ -2.28
VPS35Q96QK1 SNORD78.2-201ENST00000391076 69 ntBASIC0.82□□□□□ -2.28
VPS35Q96QK1 MIR1298-201ENST00000408783 112 ntBASIC0.82□□□□□ -2.28
VPS35Q96QK1 RNU6ATAC25P-201ENST00000408798 117 ntBASIC0.82□□□□□ -2.28
VPS35Q96QK1 RNU2-61P-201ENST00000411069 191 ntBASIC0.82□□□□□ -2.28
VPS35Q96QK1 RNU7-169P-201ENST00000459456 61 ntBASIC0.82□□□□□ -2.28
VPS35Q96QK1 ACA64.5-201ENST00000516207 127 ntBASIC0.82□□□□□ -2.28
VPS35Q96QK1 AC144568.1-201ENST00000520139 137 ntBASIC0.82□□□□□ -2.28
VPS35Q96QK1 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.82□□□□□ -2.28
VPS35Q96QK1 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.82□□□□□ -2.28
VPS35Q96QK1 MIR5690-201ENST00000583739 73 ntBASIC0.82□□□□□ -2.28
VPS35Q96QK1 AC005176.2-201ENST00000596933 147 ntBASIC0.82□□□□□ -2.28
VPS35Q96QK1 U6atac.1-201ENST00000616025 117 ntBASIC0.82□□□□□ -2.28
VPS35Q96QK1 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.82□□□□□ -2.28
VPS35Q96QK1 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.81□□□□□ -2.28
VPS35Q96QK1 RNY3P11-201ENST00000364153 102 ntBASIC0.81□□□□□ -2.28
VPS35Q96QK1 SNORD81.2-201ENST00000365153 76 ntBASIC0.81□□□□□ -2.28
VPS35Q96QK1 MT-TL1-201ENST00000386347 75 ntBASIC0.81□□□□□ -2.28
VPS35Q96QK1 RNU6-1304P-201ENST00000411374 106 ntBASIC0.81□□□□□ -2.28
VPS35Q96QK1 MRPS18CP6-201ENST00000423587 223 ntBASIC0.81□□□□□ -2.28
VPS35Q96QK1 CHEK2P4-201ENST00000450340 246 ntBASIC0.81□□□□□ -2.28
VPS35Q96QK1 RPS20P10-201ENST00000451209 253 ntBASIC0.81□□□□□ -2.28
VPS35Q96QK1 RPL30P15-201ENST00000457129 321 ntBASIC0.81□□□□□ -2.28
VPS35Q96QK1 RNU6-351P-201ENST00000516097 100 ntBASIC0.81□□□□□ -2.28
VPS35Q96QK1 AC090142.3-201ENST00000519012 385 ntBASIC0.81□□□□□ -2.28
VPS35Q96QK1 MIR4698-201ENST00000577795 80 ntBASIC0.81□□□□□ -2.28
VPS35Q96QK1 MIR4452-201ENST00000583004 71 ntBASIC0.81□□□□□ -2.28
VPS35Q96QK1 AC108706.1-201ENST00000611053 297 ntBASIC0.81□□□□□ -2.28
VPS35Q96QK1 Y_RNA.172-201ENST00000363765 102 ntBASIC0.8□□□□□ -2.28
VPS35Q96QK1 RNU6-324P-201ENST00000363957 106 ntBASIC0.8□□□□□ -2.28
VPS35Q96QK1 Y_RNA.248-201ENST00000364501 109 ntBASIC0.8□□□□□ -2.28
VPS35Q96QK1 Y_RNA.253-201ENST00000364562 112 ntBASIC0.8□□□□□ -2.28
VPS35Q96QK1 RNU6-20P-201ENST00000384106 107 ntBASIC0.8□□□□□ -2.28
VPS35Q96QK1 MIR516B2-201ENST00000385190 85 ntBASIC0.8□□□□□ -2.28
VPS35Q96QK1 RPS3AP1-201ENST00000413190 320 ntBASIC0.8□□□□□ -2.28
VPS35Q96QK1 AC004941.2-201ENST00000427009 228 ntBASIC0.8□□□□□ -2.28
VPS35Q96QK1 RNU6-155P-201ENST00000516347 100 ntBASIC0.8□□□□□ -2.28
VPS35Q96QK1 RNU6-197P-201ENST00000516680 100 ntBASIC0.8□□□□□ -2.28
VPS35Q96QK1 AC022616.4-201ENST00000522985 181 ntBASIC0.8□□□□□ -2.28
VPS35Q96QK1 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC0.8□□□□□ -2.28
VPS35Q96QK1 Y_RNA.238-201ENST00000364441 102 ntBASIC0.79□□□□□ -2.28
VPS35Q96QK1 Y_RNA.446-201ENST00000384178 104 ntBASIC0.79□□□□□ -2.28
VPS35Q96QK1 MIR520E-201ENST00000384867 87 ntBASIC0.79□□□□□ -2.28
VPS35Q96QK1 MIR628-201ENST00000385229 95 ntBASIC0.79□□□□□ -2.28
VPS35Q96QK1 Y_RNA.605-201ENST00000410577 105 ntBASIC0.79□□□□□ -2.28
VPS35Q96QK1 RNU6-1199P-201ENST00000411249 104 ntBASIC0.79□□□□□ -2.28
VPS35Q96QK1 RNU2-64P-201ENST00000411315 191 ntBASIC0.79□□□□□ -2.28
VPS35Q96QK1 PRDX4P1-201ENST00000507189 574 ntBASIC0.79□□□□□ -2.28
VPS35Q96QK1 SNORA25.10-201ENST00000515926 124 ntBASIC0.79□□□□□ -2.28
VPS35Q96QK1 RNU6-470P-201ENST00000515954 104 ntBASIC0.79□□□□□ -2.28
VPS35Q96QK1 RNU6-1012P-201ENST00000516606 109 ntBASIC0.79□□□□□ -2.28
VPS35Q96QK1 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.79□□□□□ -2.28
VPS35Q96QK1 MIR4653-201ENST00000585107 83 ntBASIC0.79□□□□□ -2.28
VPS35Q96QK1 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.79□□□□□ -2.28
VPS35Q96QK1 AC011476.5-201ENST00000615594 130 ntBASIC0.79□□□□□ -2.28
VPS35Q96QK1 AC022306.2-201ENST00000617563 647 ntBASIC0.79□□□□□ -2.28
VPS35Q96QK1 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.78□□□□□ -2.28
VPS35Q96QK1 MIR103A2-201ENST00000362154 78 ntBASIC0.78□□□□□ -2.28
VPS35Q96QK1 RNA5SP264-201ENST00000363115 107 ntBASIC0.78□□□□□ -2.28
VPS35Q96QK1 RNU6-626P-201ENST00000363354 107 ntBASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 166.5 ms