Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RNU6-341P-201ENST00000516973 96 ntBASIC1.09□□□□□ -2.23
VPS39Q96JC1 SNORD116.3-201ENST00000517176 78 ntBASIC1.09□□□□□ -2.23
VPS39Q96JC1 MIR5188-201ENST00000583467 113 ntBASIC1.09□□□□□ -2.23
VPS39Q96JC1 SNORD58B-201ENST00000607313 66 ntBASIC1.09□□□□□ -2.23
VPS39Q96JC1 AC133104.2-201ENST00000615272 193 ntBASIC1.09□□□□□ -2.23
VPS39Q96JC1 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.08□□□□□ -2.24
VPS39Q96JC1 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.08□□□□□ -2.24
VPS39Q96JC1 Y_RNA.327-201ENST00000365201 102 ntBASIC1.08□□□□□ -2.24
VPS39Q96JC1 Y_RNA.419-201ENST00000384041 102 ntBASIC1.08□□□□□ -2.24
VPS39Q96JC1 Y_RNA.428-201ENST00000384078 102 ntBASIC1.08□□□□□ -2.24
VPS39Q96JC1 RNU2-54P-201ENST00000410299 190 ntBASIC1.08□□□□□ -2.24
VPS39Q96JC1 AC010655.3-201ENST00000478818 450 ntBASIC1.08□□□□□ -2.24
VPS39Q96JC1 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.08□□□□□ -2.24
VPS39Q96JC1 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.08□□□□□ -2.24
VPS39Q96JC1 SNORA25.10-201ENST00000515926 124 ntBASIC1.08□□□□□ -2.24
VPS39Q96JC1 RNU6-436P-201ENST00000516171 114 ntBASIC1.08□□□□□ -2.24
VPS39Q96JC1 RNU6-155P-201ENST00000516347 100 ntBASIC1.08□□□□□ -2.24
VPS39Q96JC1 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.08□□□□□ -2.24
VPS39Q96JC1 AL117336.2-201ENST00000602435 335 ntBASIC1.08□□□□□ -2.24
VPS39Q96JC1 Y_RNA.27-201ENST00000362540 103 ntBASIC1.07□□□□□ -2.24
VPS39Q96JC1 RNU4-79P-201ENST00000362764 141 ntBASIC1.07□□□□□ -2.24
VPS39Q96JC1 RNU6-324P-201ENST00000363957 106 ntBASIC1.07□□□□□ -2.24
VPS39Q96JC1 SNORA22-201ENST00000383907 134 ntBASIC1.07□□□□□ -2.24
VPS39Q96JC1 SNORA22C-201ENST00000384614 134 ntBASIC1.07□□□□□ -2.24
VPS39Q96JC1 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.07□□□□□ -2.24
VPS39Q96JC1 MTATP6P23-201ENST00000440153 476 ntBASIC1.07□□□□□ -2.24
VPS39Q96JC1 RPS4XP11-201ENST00000446897 772 ntBASIC1.07□□□□□ -2.24
VPS39Q96JC1 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC1.07□□□□□ -2.24
VPS39Q96JC1 AL049830.1-201ENST00000468034 425 ntBASIC1.07□□□□□ -2.24
VPS39Q96JC1 MTND3P22-201ENST00000510932 243 ntBASIC1.07□□□□□ -2.24
VPS39Q96JC1 RNU6-1278P-201ENST00000516130 107 ntBASIC1.07□□□□□ -2.24
VPS39Q96JC1 RNU6-917P-201ENST00000516294 104 ntBASIC1.07□□□□□ -2.24
VPS39Q96JC1 MIR3684-201ENST00000579779 74 ntBASIC1.07□□□□□ -2.24
VPS39Q96JC1 VN1R91P-201ENST00000594377 169 ntBASIC1.07□□□□□ -2.24
VPS39Q96JC1 AL513534.2-201ENST00000603836 250 ntBASIC1.07□□□□□ -2.24
VPS39Q96JC1 AC007485.1-201ENST00000616755 206 ntBASIC1.07□□□□□ -2.24
VPS39Q96JC1 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.07□□□□□ -2.24
VPS39Q96JC1 AL513423.1-201ENST00000621695 132 ntBASIC1.07□□□□□ -2.24
VPS39Q96JC1 RNU4-76P-201ENST00000364509 141 ntBASIC1.06□□□□□ -2.24
VPS39Q96JC1 RNU6-1175P-201ENST00000365200 107 ntBASIC1.06□□□□□ -2.24
VPS39Q96JC1 Y_RNA.329-201ENST00000365209 107 ntBASIC1.06□□□□□ -2.24
VPS39Q96JC1 RNU6-308P-201ENST00000390957 107 ntBASIC1.06□□□□□ -2.24
VPS39Q96JC1 RNU7-12P-201ENST00000516030 62 ntBASIC1.06□□□□□ -2.24
VPS39Q96JC1 SNORA31.4-201ENST00000516049 129 ntBASIC1.06□□□□□ -2.24
VPS39Q96JC1 AP002004.2-201ENST00000531656 154 ntBASIC1.06□□□□□ -2.24
VPS39Q96JC1 MIR4295-201ENST00000585286 85 ntBASIC1.06□□□□□ -2.24
VPS39Q96JC1 AL133255.1-201ENST00000606374 441 ntBASIC1.06□□□□□ -2.24
VPS39Q96JC1 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.06□□□□□ -2.24
VPS39Q96JC1 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
VPS39Q96JC1 SNORD81.1-201ENST00000363064 77 ntBASIC1.05□□□□□ -2.24
VPS39Q96JC1 RNY1P10-201ENST00000363268 113 ntBASIC1.05□□□□□ -2.24
VPS39Q96JC1 Y_RNA.458-201ENST00000384240 102 ntBASIC1.05□□□□□ -2.24
VPS39Q96JC1 RNY1P14-201ENST00000384426 108 ntBASIC1.05□□□□□ -2.24
VPS39Q96JC1 SNORD41-201ENST00000386967 70 ntBASIC1.05□□□□□ -2.24
VPS39Q96JC1 RNU6-321P-201ENST00000410912 106 ntBASIC1.05□□□□□ -2.24
VPS39Q96JC1 Y_RNA.621-201ENST00000411065 96 ntBASIC1.05□□□□□ -2.24
VPS39Q96JC1 RNU2-61P-201ENST00000411069 191 ntBASIC1.05□□□□□ -2.24
VPS39Q96JC1 PIGPP3-201ENST00000425307 415 ntBASIC1.05□□□□□ -2.24
VPS39Q96JC1 AL162725.1-201ENST00000435405 301 ntBASIC1.05□□□□□ -2.24
VPS39Q96JC1 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.05□□□□□ -2.24
VPS39Q96JC1 TRMT112P2-201ENST00000512910 132 ntBASIC1.05□□□□□ -2.24
VPS39Q96JC1 RNU6-911P-201ENST00000516523 104 ntBASIC1.05□□□□□ -2.24
VPS39Q96JC1 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.05□□□□□ -2.24
VPS39Q96JC1 AC136932.1-201ENST00000574771 208 ntBASIC1.05□□□□□ -2.24
VPS39Q96JC1 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.05□□□□□ -2.24
VPS39Q96JC1 MIR4661-201ENST00000582720 75 ntBASIC1.05□□□□□ -2.24
VPS39Q96JC1 AL162424.1-201ENST00000602325 221 ntBASIC1.05□□□□□ -2.24
VPS39Q96JC1 AC006380.1-201ENST00000603598 186 ntBASIC1.05□□□□□ -2.24
VPS39Q96JC1 AC022441.3-201ENST00000605737 136 ntBASIC1.05□□□□□ -2.24
VPS39Q96JC1 AC004832.4-201ENST00000608952 331 ntBASIC1.05□□□□□ -2.24
VPS39Q96JC1 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.05□□□□□ -2.24
VPS39Q96JC1 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
VPS39Q96JC1 MIR369-201ENST00000362155 70 ntBASIC1.04□□□□□ -2.24
VPS39Q96JC1 MIR337-201ENST00000362281 93 ntBASIC1.04□□□□□ -2.24
VPS39Q96JC1 Y_RNA.813-201ENST00000364639 102 ntBASIC1.04□□□□□ -2.24
VPS39Q96JC1 AC104332.1-201ENST00000440471 797 ntBASIC1.04□□□□□ -2.24
VPS39Q96JC1 AC087343.1-201ENST00000477341 475 ntBASIC1.04□□□□□ -2.24
VPS39Q96JC1 RNU6-947P-201ENST00000516264 106 ntBASIC1.04□□□□□ -2.24
VPS39Q96JC1 SNORD114-21-201ENST00000606412 72 ntBASIC1.04□□□□□ -2.24
VPS39Q96JC1 SNORA28-201ENST00000606769 126 ntBASIC1.04□□□□□ -2.24
VPS39Q96JC1 AC006157.1-201ENST00000611750 366 ntBASIC1.04□□□□□ -2.24
VPS39Q96JC1 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.04□□□□□ -2.24
VPS39Q96JC1 Y_RNA.31-201ENST00000362574 102 ntBASIC1.03□□□□□ -2.24
VPS39Q96JC1 RNU6-199P-201ENST00000362954 107 ntBASIC1.03□□□□□ -2.24
VPS39Q96JC1 SNORD68-201ENST00000363214 84 ntBASIC1.03□□□□□ -2.24
VPS39Q96JC1 Y_RNA.252-201ENST00000364556 101 ntBASIC1.03□□□□□ -2.24
VPS39Q96JC1 RNU6-392P-201ENST00000364926 101 ntBASIC1.03□□□□□ -2.24
VPS39Q96JC1 Y_RNA.570-201ENST00000384750 101 ntBASIC1.03□□□□□ -2.24
VPS39Q96JC1 MIR19B1-201ENST00000384829 87 ntBASIC1.03□□□□□ -2.24
VPS39Q96JC1 MIR526A1-201ENST00000384897 85 ntBASIC1.03□□□□□ -2.24
VPS39Q96JC1 RNU4-30P-201ENST00000410245 143 ntBASIC1.03□□□□□ -2.24
VPS39Q96JC1 AL160004.2-201ENST00000432935 350 ntBASIC1.03□□□□□ -2.24
VPS39Q96JC1 AC236972.2-201ENST00000434979 310 ntBASIC1.03□□□□□ -2.24
VPS39Q96JC1 AC005840.1-201ENST00000498412 377 ntBASIC1.03□□□□□ -2.24
VPS39Q96JC1 SNORA31.2-201ENST00000516019 134 ntBASIC1.03□□□□□ -2.24
VPS39Q96JC1 MIR3145-201ENST00000580727 82 ntBASIC1.03□□□□□ -2.24
VPS39Q96JC1 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.03□□□□□ -2.24
VPS39Q96JC1 AL591926.4-201ENST00000616895 298 ntBASIC1.03□□□□□ -2.24
VPS39Q96JC1 AL606534.2-204ENST00000635008 178 ntBASIC1.03□□□□□ -2.24
VPS39Q96JC1 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 176.7 ms