Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNU2-34P-201ENST00000516534 121 ntBASIC3.06□□□□□ -1.92
USHBP1Q8N6Y0 CENPCP1-201ENST00000533085 2578 ntBASIC3.06□□□□□ -1.92
USHBP1Q8N6Y0 AC067747.1-201ENST00000608026 250 ntBASIC3.06□□□□□ -1.92
USHBP1Q8N6Y0 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
USHBP1Q8N6Y0 MIR21-201ENST00000362134 72 ntBASIC3.05□□□□□ -1.92
USHBP1Q8N6Y0 SNORD114-1-201ENST00000362705 72 ntBASIC3.05□□□□□ -1.92
USHBP1Q8N6Y0 RNU6-215P-201ENST00000365169 102 ntBASIC3.05□□□□□ -1.92
USHBP1Q8N6Y0 RNU6-597P-201ENST00000365620 102 ntBASIC3.05□□□□□ -1.92
USHBP1Q8N6Y0 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
USHBP1Q8N6Y0 RPL30P4-201ENST00000429309 333 ntBASIC3.05□□□□□ -1.92
USHBP1Q8N6Y0 RPS27P22-201ENST00000478056 241 ntBASIC3.05□□□□□ -1.92
USHBP1Q8N6Y0 Y_RNA.686-201ENST00000516548 134 ntBASIC3.05□□□□□ -1.92
USHBP1Q8N6Y0 SCARNA3-201ENST00000517097 143 ntBASIC3.05□□□□□ -1.92
USHBP1Q8N6Y0 AC015720.1-201ENST00000565251 277 ntBASIC3.05□□□□□ -1.92
USHBP1Q8N6Y0 AC023043.3-201ENST00000593113 385 ntBASIC3.05□□□□□ -1.92
USHBP1Q8N6Y0 MIR1248-201ENST00000629190 106 ntBASIC3.05□□□□□ -1.92
USHBP1Q8N6Y0 MIR7157-201ENST00000635801 60 ntBASIC3.05□□□□□ -1.92
USHBP1Q8N6Y0 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
USHBP1Q8N6Y0 SNORA68.1-201ENST00000364537 132 ntBASIC3.04□□□□□ -1.92
USHBP1Q8N6Y0 Y_RNA.251-201ENST00000364551 99 ntBASIC3.04□□□□□ -1.92
USHBP1Q8N6Y0 RNU6-117P-201ENST00000365415 107 ntBASIC3.04□□□□□ -1.92
USHBP1Q8N6Y0 SNORA72-201ENST00000384339 132 ntBASIC3.04□□□□□ -1.92
USHBP1Q8N6Y0 RNU6-1328P-201ENST00000410938 106 ntBASIC3.04□□□□□ -1.92
USHBP1Q8N6Y0 RPS12P2-201ENST00000439728 269 ntBASIC3.04□□□□□ -1.92
USHBP1Q8N6Y0 RNU6-965P-201ENST00000516721 96 ntBASIC3.04□□□□□ -1.92
USHBP1Q8N6Y0 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.04□□□□□ -1.92
USHBP1Q8N6Y0 MIR5739-201ENST00000619803 80 ntBASIC3.04□□□□□ -1.92
USHBP1Q8N6Y0 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
USHBP1Q8N6Y0 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
USHBP1Q8N6Y0 MIR7515-201ENST00000637837 67 ntBASIC3.04□□□□□ -1.92
USHBP1Q8N6Y0 RNU6-1080P-201ENST00000383982 107 ntBASIC3.03□□□□□ -1.92
USHBP1Q8N6Y0 RNU6-546P-201ENST00000383991 107 ntBASIC3.03□□□□□ -1.92
USHBP1Q8N6Y0 RNU6-136P-201ENST00000384663 107 ntBASIC3.03□□□□□ -1.92
USHBP1Q8N6Y0 MIR218-1-201ENST00000384999 110 ntBASIC3.03□□□□□ -1.92
USHBP1Q8N6Y0 MIR221-201ENST00000385135 110 ntBASIC3.03□□□□□ -1.92
USHBP1Q8N6Y0 snoU13.23-201ENST00000458863 104 ntBASIC3.03□□□□□ -1.92
USHBP1Q8N6Y0 AC090515.1-201ENST00000465295 476 ntBASIC3.03□□□□□ -1.92
USHBP1Q8N6Y0 RN7SL499P-201ENST00000481141 276 ntBASIC3.03□□□□□ -1.92
USHBP1Q8N6Y0 RN7SKP282-201ENST00000516824 299 ntBASIC3.03□□□□□ -1.92
USHBP1Q8N6Y0 MIR2681-201ENST00000581814 105 ntBASIC3.03□□□□□ -1.92
USHBP1Q8N6Y0 AL021707.8-201ENST00000609428 183 ntBASIC3.03□□□□□ -1.92
USHBP1Q8N6Y0 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.03□□□□□ -1.92
USHBP1Q8N6Y0 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
USHBP1Q8N6Y0 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
USHBP1Q8N6Y0 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
USHBP1Q8N6Y0 RNU6-834P-201ENST00000362367 110 ntBASIC3.02□□□□□ -1.93
USHBP1Q8N6Y0 RNA5SP99-201ENST00000364020 114 ntBASIC3.02□□□□□ -1.93
USHBP1Q8N6Y0 RNU6-1082P-201ENST00000364574 107 ntBASIC3.02□□□□□ -1.93
USHBP1Q8N6Y0 RNU1-51P-201ENST00000365345 176 ntBASIC3.02□□□□□ -1.93
USHBP1Q8N6Y0 AC245047.4-201ENST00000433189 144 ntBASIC3.02□□□□□ -1.93
USHBP1Q8N6Y0 AC023449.1-201ENST00000454464 154 ntBASIC3.02□□□□□ -1.93
USHBP1Q8N6Y0 RNU6-1299P-201ENST00000516316 100 ntBASIC3.02□□□□□ -1.93
USHBP1Q8N6Y0 RNU6-197P-201ENST00000516680 100 ntBASIC3.02□□□□□ -1.93
USHBP1Q8N6Y0 RNA5SP490-201ENST00000517141 136 ntBASIC3.02□□□□□ -1.93
USHBP1Q8N6Y0 AC090142.3-201ENST00000519012 385 ntBASIC3.02□□□□□ -1.93
USHBP1Q8N6Y0 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.02□□□□□ -1.93
USHBP1Q8N6Y0 AL160236.1-201ENST00000556317 195 ntBASIC3.02□□□□□ -1.93
USHBP1Q8N6Y0 AC015712.3-201ENST00000559380 164 ntBASIC3.02□□□□□ -1.93
USHBP1Q8N6Y0 MIR5007-201ENST00000583098 95 ntBASIC3.02□□□□□ -1.93
USHBP1Q8N6Y0 U7.2-201ENST00000607576 63 ntBASIC3.02□□□□□ -1.93
USHBP1Q8N6Y0 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
USHBP1Q8N6Y0 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC3.01□□□□□ -1.93
USHBP1Q8N6Y0 U8.9-201ENST00000365667 134 ntBASIC3.01□□□□□ -1.93
USHBP1Q8N6Y0 Y_RNA.432-201ENST00000384087 111 ntBASIC3.01□□□□□ -1.93
USHBP1Q8N6Y0 RNU2-32P-201ENST00000411193 191 ntBASIC3.01□□□□□ -1.93
USHBP1Q8N6Y0 AC016909.1-201ENST00000415916 166 ntBASIC3.01□□□□□ -1.93
USHBP1Q8N6Y0 AL035461.1-201ENST00000421490 332 ntBASIC3.01□□□□□ -1.93
USHBP1Q8N6Y0 AC080013.2-201ENST00000460866 323 ntBASIC3.01□□□□□ -1.93
USHBP1Q8N6Y0 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.01□□□□□ -1.93
USHBP1Q8N6Y0 RNU6-659P-201ENST00000516454 104 ntBASIC3.01□□□□□ -1.93
USHBP1Q8N6Y0 RNU6-919P-201ENST00000516731 104 ntBASIC3.01□□□□□ -1.93
USHBP1Q8N6Y0 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC3.01□□□□□ -1.93
USHBP1Q8N6Y0 AL049861.1-201ENST00000603130 150 ntBASIC3.01□□□□□ -1.93
USHBP1Q8N6Y0 AC120024.3-201ENST00000603167 156 ntBASIC3.01□□□□□ -1.93
USHBP1Q8N6Y0 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC3.01□□□□□ -1.93
USHBP1Q8N6Y0 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.01□□□□□ -1.93
USHBP1Q8N6Y0 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
USHBP1Q8N6Y0 RNY1P11-201ENST00000363759 113 ntBASIC3□□□□□ -1.93
USHBP1Q8N6Y0 Y_RNA.203-201ENST00000364106 102 ntBASIC3□□□□□ -1.93
USHBP1Q8N6Y0 SNORA25.7-201ENST00000364375 127 ntBASIC3□□□□□ -1.93
USHBP1Q8N6Y0 RNU6-1325P-201ENST00000364905 105 ntBASIC3□□□□□ -1.93
USHBP1Q8N6Y0 Y_RNA.584-201ENST00000391090 114 ntBASIC3□□□□□ -1.93
USHBP1Q8N6Y0 AL161788.1-201ENST00000441805 169 ntBASIC3□□□□□ -1.93
USHBP1Q8N6Y0 SNORA31.26-201ENST00000517250 137 ntBASIC3□□□□□ -1.93
USHBP1Q8N6Y0 AC105245.1-201ENST00000581934 244 ntBASIC3□□□□□ -1.93
USHBP1Q8N6Y0 MIR3199-1-201ENST00000582434 88 ntBASIC3□□□□□ -1.93
USHBP1Q8N6Y0 AL929325.1-201ENST00000603096 117 ntBASIC3□□□□□ -1.93
USHBP1Q8N6Y0 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3□□□□□ -1.93
USHBP1Q8N6Y0 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3□□□□□ -1.93
USHBP1Q8N6Y0 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
USHBP1Q8N6Y0 AC080128.1-201ENST00000474389 1917 ntBASIC2.99□□□□□ -1.93
USHBP1Q8N6Y0 AC138915.1-201ENST00000565427 1685 ntBASIC2.99□□□□□ -1.93
USHBP1Q8N6Y0 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.99□□□□□ -1.93
USHBP1Q8N6Y0 RNU1-22P-201ENST00000363334 158 ntBASIC2.99□□□□□ -1.93
USHBP1Q8N6Y0 RNU6-915P-201ENST00000364943 103 ntBASIC2.99□□□□□ -1.93
USHBP1Q8N6Y0 RNU6-484P-201ENST00000384016 107 ntBASIC2.99□□□□□ -1.93
USHBP1Q8N6Y0 Y_RNA.563-201ENST00000384707 108 ntBASIC2.99□□□□□ -1.93
USHBP1Q8N6Y0 CYCSP49-201ENST00000420810 319 ntBASIC2.99□□□□□ -1.93
USHBP1Q8N6Y0 MTCO1P44-201ENST00000441935 243 ntBASIC2.99□□□□□ -1.93
USHBP1Q8N6Y0 AL357134.1-201ENST00000445848 426 ntBASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 128.8 ms