Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 RPS27P21-201ENST00000486977 252 ntBASIC2.23□□□□□ -2.05
KRT28Q7Z3Y7 RNU6-1338P-201ENST00000516328 91 ntBASIC2.23□□□□□ -2.05
KRT28Q7Z3Y7 RNU1-142P-201ENST00000516682 145 ntBASIC2.23□□□□□ -2.05
KRT28Q7Z3Y7 RNU2-31P-201ENST00000516954 155 ntBASIC2.23□□□□□ -2.05
KRT28Q7Z3Y7 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC2.23□□□□□ -2.05
KRT28Q7Z3Y7 AL359075.3-201ENST00000613288 217 ntBASIC2.23□□□□□ -2.05
KRT28Q7Z3Y7 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2.23□□□□□ -2.05
KRT28Q7Z3Y7 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.23□□□□□ -2.05
KRT28Q7Z3Y7 SNORA25.1-201ENST00000362326 128 ntBASIC2.22□□□□□ -2.05
KRT28Q7Z3Y7 SNORA7.1-201ENST00000363750 139 ntBASIC2.22□□□□□ -2.05
KRT28Q7Z3Y7 Y_RNA.288-201ENST00000364854 92 ntBASIC2.22□□□□□ -2.05
KRT28Q7Z3Y7 MIR515-2-201ENST00000384883 83 ntBASIC2.22□□□□□ -2.05
KRT28Q7Z3Y7 MIR515-1-201ENST00000384884 83 ntBASIC2.22□□□□□ -2.05
KRT28Q7Z3Y7 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
KRT28Q7Z3Y7 RNU6-1248P-201ENST00000391096 64 ntBASIC2.22□□□□□ -2.05
KRT28Q7Z3Y7 CST2P1-201ENST00000425770 87 ntBASIC2.22□□□□□ -2.05
KRT28Q7Z3Y7 MTND4LP30-201ENST00000454092 297 ntBASIC2.22□□□□□ -2.05
KRT28Q7Z3Y7 SNORD127-201ENST00000458892 86 ntBASIC2.22□□□□□ -2.05
KRT28Q7Z3Y7 MIR514B-201ENST00000516774 80 ntBASIC2.22□□□□□ -2.05
KRT28Q7Z3Y7 AL512605.2-201ENST00000592972 256 ntBASIC2.22□□□□□ -2.05
KRT28Q7Z3Y7 U6.73-201ENST00000619194 103 ntBASIC2.22□□□□□ -2.05
KRT28Q7Z3Y7 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
KRT28Q7Z3Y7 RNU4-80P-201ENST00000363200 141 ntBASIC2.21□□□□□ -2.06
KRT28Q7Z3Y7 RNU6-702P-201ENST00000364982 107 ntBASIC2.21□□□□□ -2.06
KRT28Q7Z3Y7 RNU6-855P-201ENST00000410395 104 ntBASIC2.21□□□□□ -2.06
KRT28Q7Z3Y7 RNA5SP338-201ENST00000410495 85 ntBASIC2.21□□□□□ -2.06
KRT28Q7Z3Y7 RNA5SP450-201ENST00000411206 102 ntBASIC2.21□□□□□ -2.06
KRT28Q7Z3Y7 RPS26P55-201ENST00000471178 356 ntBASIC2.21□□□□□ -2.06
KRT28Q7Z3Y7 RNU7-172P-201ENST00000517125 64 ntBASIC2.21□□□□□ -2.06
KRT28Q7Z3Y7 RNU2-19P-201ENST00000517288 84 ntBASIC2.21□□□□□ -2.06
KRT28Q7Z3Y7 MIR5094-201ENST00000578766 85 ntBASIC2.21□□□□□ -2.06
KRT28Q7Z3Y7 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.21□□□□□ -2.06
KRT28Q7Z3Y7 U1.36-201ENST00000620684 176 ntBASIC2.21□□□□□ -2.06
KRT28Q7Z3Y7 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
KRT28Q7Z3Y7 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.2□□□□□ -2.06
KRT28Q7Z3Y7 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.2□□□□□ -2.06
KRT28Q7Z3Y7 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.2□□□□□ -2.06
KRT28Q7Z3Y7 Y_RNA.237-201ENST00000364439 102 ntBASIC2.2□□□□□ -2.06
KRT28Q7Z3Y7 SNORA8-201ENST00000384574 139 ntBASIC2.2□□□□□ -2.06
KRT28Q7Z3Y7 AC099677.2-201ENST00000436385 175 ntBASIC2.2□□□□□ -2.06
KRT28Q7Z3Y7 AC055731.1-201ENST00000474387 401 ntBASIC2.2□□□□□ -2.06
KRT28Q7Z3Y7 HMGN1P7-201ENST00000491722 313 ntBASIC2.2□□□□□ -2.06
KRT28Q7Z3Y7 SERF1AP1-201ENST00000514575 187 ntBASIC2.2□□□□□ -2.06
KRT28Q7Z3Y7 RNU6-1278P-201ENST00000516130 107 ntBASIC2.2□□□□□ -2.06
KRT28Q7Z3Y7 RPL21P9-201ENST00000556149 474 ntBASIC2.2□□□□□ -2.06
KRT28Q7Z3Y7 AC069114.2-201ENST00000604699 304 ntBASIC2.2□□□□□ -2.06
KRT28Q7Z3Y7 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.19□□□□□ -2.06
KRT28Q7Z3Y7 RNU6-376P-201ENST00000384731 106 ntBASIC2.19□□□□□ -2.06
KRT28Q7Z3Y7 RNA5SP501-201ENST00000410990 112 ntBASIC2.19□□□□□ -2.06
KRT28Q7Z3Y7 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
KRT28Q7Z3Y7 EBAG9P1-201ENST00000418955 543 ntBASIC2.19□□□□□ -2.06
KRT28Q7Z3Y7 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.19□□□□□ -2.06
KRT28Q7Z3Y7 MTCO1P5-201ENST00000433573 344 ntBASIC2.19□□□□□ -2.06
KRT28Q7Z3Y7 HSPE1P13-201ENST00000451143 297 ntBASIC2.19□□□□□ -2.06
KRT28Q7Z3Y7 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.19□□□□□ -2.06
KRT28Q7Z3Y7 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.19□□□□□ -2.06
KRT28Q7Z3Y7 AC097462.1-201ENST00000514125 324 ntBASIC2.19□□□□□ -2.06
KRT28Q7Z3Y7 RNVU1-2-201ENST00000516326 135 ntBASIC2.19□□□□□ -2.06
KRT28Q7Z3Y7 RNU6-1337P-201ENST00000516525 95 ntBASIC2.19□□□□□ -2.06
KRT28Q7Z3Y7 RNU7-128P-201ENST00000517247 62 ntBASIC2.19□□□□□ -2.06
KRT28Q7Z3Y7 AC015720.1-201ENST00000565251 277 ntBASIC2.19□□□□□ -2.06
KRT28Q7Z3Y7 AC062037.2-201ENST00000610137 73 ntBASIC2.19□□□□□ -2.06
KRT28Q7Z3Y7 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
KRT28Q7Z3Y7 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.18□□□□□ -2.06
KRT28Q7Z3Y7 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
KRT28Q7Z3Y7 RNU1-22P-201ENST00000363334 158 ntBASIC2.18□□□□□ -2.06
KRT28Q7Z3Y7 SNORA33-201ENST00000363664 130 ntBASIC2.18□□□□□ -2.06
KRT28Q7Z3Y7 Y_RNA.341-201ENST00000365341 102 ntBASIC2.18□□□□□ -2.06
KRT28Q7Z3Y7 RNU6-117P-201ENST00000365415 107 ntBASIC2.18□□□□□ -2.06
KRT28Q7Z3Y7 RNU6-136P-201ENST00000384663 107 ntBASIC2.18□□□□□ -2.06
KRT28Q7Z3Y7 MT-TG-201ENST00000387429 68 ntBASIC2.18□□□□□ -2.06
KRT28Q7Z3Y7 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.18□□□□□ -2.06
KRT28Q7Z3Y7 MTND1P19-201ENST00000511780 315 ntBASIC2.18□□□□□ -2.06
KRT28Q7Z3Y7 RNU7-99P-201ENST00000516271 62 ntBASIC2.18□□□□□ -2.06
KRT28Q7Z3Y7 AC011604.1-201ENST00000545978 196 ntBASIC2.18□□□□□ -2.06
KRT28Q7Z3Y7 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.18□□□□□ -2.06
KRT28Q7Z3Y7 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.18□□□□□ -2.06
KRT28Q7Z3Y7 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
KRT28Q7Z3Y7 UBE2WP1-201ENST00000362030 340 ntBASIC2.17□□□□□ -2.06
KRT28Q7Z3Y7 Y_RNA.14-201ENST00000362415 103 ntBASIC2.17□□□□□ -2.06
KRT28Q7Z3Y7 RNU4-13P-201ENST00000364019 141 ntBASIC2.17□□□□□ -2.06
KRT28Q7Z3Y7 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
KRT28Q7Z3Y7 SNORA48.1-201ENST00000390879 135 ntBASIC2.17□□□□□ -2.06
KRT28Q7Z3Y7 SNORA67.6-201ENST00000391093 99 ntBASIC2.17□□□□□ -2.06
KRT28Q7Z3Y7 RNU11-5P-201ENST00000391216 129 ntBASIC2.17□□□□□ -2.06
KRT28Q7Z3Y7 SNORD58.1-201ENST00000391313 66 ntBASIC2.17□□□□□ -2.06
KRT28Q7Z3Y7 AL135790.2-201ENST00000437701 267 ntBASIC2.17□□□□□ -2.06
KRT28Q7Z3Y7 RNU6-1132P-201ENST00000459214 107 ntBASIC2.17□□□□□ -2.06
KRT28Q7Z3Y7 RNA5SP57-201ENST00000459463 123 ntBASIC2.17□□□□□ -2.06
KRT28Q7Z3Y7 RNU6-191P-201ENST00000516295 94 ntBASIC2.17□□□□□ -2.06
KRT28Q7Z3Y7 RNU6-63P-201ENST00000516690 95 ntBASIC2.17□□□□□ -2.06
KRT28Q7Z3Y7 AC024995.1-201ENST00000523014 93 ntBASIC2.17□□□□□ -2.06
KRT28Q7Z3Y7 MIR4421-201ENST00000578133 69 ntBASIC2.17□□□□□ -2.06
KRT28Q7Z3Y7 AC012433.1-201ENST00000588916 398 ntBASIC2.17□□□□□ -2.06
KRT28Q7Z3Y7 U6.108-201ENST00000637764 58 ntBASIC2.17□□□□□ -2.06
KRT28Q7Z3Y7 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.17□□□□□ -2.06
KRT28Q7Z3Y7 RNA5SP276-201ENST00000362580 94 ntBASIC2.16□□□□□ -2.06
KRT28Q7Z3Y7 RNU6-1019P-201ENST00000364424 107 ntBASIC2.16□□□□□ -2.06
KRT28Q7Z3Y7 Y_RNA.368-201ENST00000365547 113 ntBASIC2.16□□□□□ -2.06
KRT28Q7Z3Y7 MIR1323-201ENST00000408090 73 ntBASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms