Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC104332.1-201ENST00000440471 797 ntBASIC2.35□□□□□ -2.03
VPS53Q5VIR6 RNU6-1146P-201ENST00000516282 102 ntBASIC2.35□□□□□ -2.03
VPS53Q5VIR6 MIR4448-201ENST00000584360 86 ntBASIC2.35□□□□□ -2.03
VPS53Q5VIR6 AC072026.1-201ENST00000605023 201 ntBASIC2.35□□□□□ -2.03
VPS53Q5VIR6 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.35□□□□□ -2.03
VPS53Q5VIR6 ZNF702P-202ENST00000434269 1966 ntBASIC2.35□□□□□ -2.03
VPS53Q5VIR6 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.34□□□□□ -2.03
VPS53Q5VIR6 Y_RNA.172-201ENST00000363765 102 ntBASIC2.34□□□□□ -2.03
VPS53Q5VIR6 RNU6-1164P-201ENST00000364428 107 ntBASIC2.34□□□□□ -2.03
VPS53Q5VIR6 RNU4-52P-201ENST00000384209 138 ntBASIC2.34□□□□□ -2.03
VPS53Q5VIR6 RNU6-918P-201ENST00000391219 106 ntBASIC2.34□□□□□ -2.03
VPS53Q5VIR6 AC060773.1-201ENST00000421698 310 ntBASIC2.34□□□□□ -2.03
VPS53Q5VIR6 BX510359.4-201ENST00000423750 193 ntBASIC2.34□□□□□ -2.03
VPS53Q5VIR6 RNU7-141P-201ENST00000459304 62 ntBASIC2.34□□□□□ -2.03
VPS53Q5VIR6 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.34□□□□□ -2.03
VPS53Q5VIR6 YWHAEP4-201ENST00000505390 198 ntBASIC2.34□□□□□ -2.03
VPS53Q5VIR6 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC2.34□□□□□ -2.03
VPS53Q5VIR6 MIR514B-201ENST00000516774 80 ntBASIC2.34□□□□□ -2.03
VPS53Q5VIR6 AC027419.1-201ENST00000522976 328 ntBASIC2.34□□□□□ -2.03
VPS53Q5VIR6 AL137100.2-201ENST00000555786 315 ntBASIC2.34□□□□□ -2.03
VPS53Q5VIR6 AC004832.4-201ENST00000608952 331 ntBASIC2.34□□□□□ -2.03
VPS53Q5VIR6 AL353149.1-201ENST00000610667 244 ntBASIC2.34□□□□□ -2.03
VPS53Q5VIR6 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC2.34□□□□□ -2.03
VPS53Q5VIR6 Y_RNA.180-201ENST00000363867 113 ntBASIC2.33□□□□□ -2.04
VPS53Q5VIR6 RNU6-1048P-201ENST00000364054 107 ntBASIC2.33□□□□□ -2.04
VPS53Q5VIR6 RNU6-117P-201ENST00000365415 107 ntBASIC2.33□□□□□ -2.04
VPS53Q5VIR6 RNU6-47P-201ENST00000383866 107 ntBASIC2.33□□□□□ -2.04
VPS53Q5VIR6 RNU6-1323P-201ENST00000384025 107 ntBASIC2.33□□□□□ -2.04
VPS53Q5VIR6 RNU4-70P-201ENST00000384579 139 ntBASIC2.33□□□□□ -2.04
VPS53Q5VIR6 MTCO2P33-201ENST00000402100 465 ntBASIC2.33□□□□□ -2.04
VPS53Q5VIR6 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.33□□□□□ -2.04
VPS53Q5VIR6 MIR1253-201ENST00000408273 105 ntBASIC2.33□□□□□ -2.04
VPS53Q5VIR6 MIR1283-2-201ENST00000408621 87 ntBASIC2.33□□□□□ -2.04
VPS53Q5VIR6 AC003989.2-201ENST00000440224 169 ntBASIC2.33□□□□□ -2.04
VPS53Q5VIR6 RPS27P22-201ENST00000478056 241 ntBASIC2.33□□□□□ -2.04
VPS53Q5VIR6 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.33□□□□□ -2.04
VPS53Q5VIR6 AC011406.1-201ENST00000512440 370 ntBASIC2.33□□□□□ -2.04
VPS53Q5VIR6 AC100767.1-201ENST00000528178 123 ntBASIC2.33□□□□□ -2.04
VPS53Q5VIR6 MIR3935-201ENST00000583472 104 ntBASIC2.33□□□□□ -2.04
VPS53Q5VIR6 MIR4438-201ENST00000585271 93 ntBASIC2.33□□□□□ -2.04
VPS53Q5VIR6 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
VPS53Q5VIR6 ZNF355P-201ENST00000427301 3216 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 AL356292.1-201ENST00000283110 373 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 snoU2-30.2-201ENST00000362805 70 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 RNU1-22P-201ENST00000363334 158 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 Y_RNA.270-201ENST00000364693 104 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 Y_RNA.308-201ENST00000365043 101 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 RNU6-886P-201ENST00000384319 105 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 SNORD116-13-201ENST00000384408 92 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 AL158823.1-201ENST00000418441 478 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 HMGN2P3-201ENST00000433603 273 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 HMGN2P5-201ENST00000436882 273 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 RNA5SP233-201ENST00000459153 113 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 snoU13.26-201ENST00000459452 105 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 RPS27P21-201ENST00000486977 252 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 AC107393.1-201ENST00000512403 346 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 AC097462.1-201ENST00000514125 324 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 RNU6-1278P-201ENST00000516130 107 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 RNU7-115P-201ENST00000516433 55 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 MIR5688-201ENST00000580619 83 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 MIR4308-201ENST00000580634 81 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 AP003357.1-201ENST00000604497 148 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 U6.73-201ENST00000619194 103 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 U1.36-201ENST00000620684 176 ntBASIC2.32□□□□□ -2.04
VPS53Q5VIR6 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.32□□□□□ -2.04
VPS53Q5VIR6 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
VPS53Q5VIR6 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.31□□□□□ -2.04
VPS53Q5VIR6 RNU6-23P-201ENST00000363283 107 ntBASIC2.31□□□□□ -2.04
VPS53Q5VIR6 SNORD114-6-201ENST00000364393 72 ntBASIC2.31□□□□□ -2.04
VPS53Q5VIR6 RNU6-923P-201ENST00000364753 107 ntBASIC2.31□□□□□ -2.04
VPS53Q5VIR6 RNU4-17P-201ENST00000365598 141 ntBASIC2.31□□□□□ -2.04
VPS53Q5VIR6 RNU6-144P-201ENST00000383951 107 ntBASIC2.31□□□□□ -2.04
VPS53Q5VIR6 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
VPS53Q5VIR6 MIR1289-2-201ENST00000408360 111 ntBASIC2.31□□□□□ -2.04
VPS53Q5VIR6 AL356379.1-201ENST00000414105 126 ntBASIC2.31□□□□□ -2.04
VPS53Q5VIR6 HMGN2P34-201ENST00000437647 269 ntBASIC2.31□□□□□ -2.04
VPS53Q5VIR6 HSPE1P21-201ENST00000438283 308 ntBASIC2.31□□□□□ -2.04
VPS53Q5VIR6 snoU13.15-201ENST00000459407 104 ntBASIC2.31□□□□□ -2.04
VPS53Q5VIR6 AC010409.1-201ENST00000487382 476 ntBASIC2.31□□□□□ -2.04
VPS53Q5VIR6 RNY3P16-201ENST00000516338 101 ntBASIC2.31□□□□□ -2.04
VPS53Q5VIR6 RNU7-116P-201ENST00000516940 62 ntBASIC2.31□□□□□ -2.04
VPS53Q5VIR6 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.31□□□□□ -2.04
VPS53Q5VIR6 AC005972.2-201ENST00000604690 348 ntBASIC2.31□□□□□ -2.04
VPS53Q5VIR6 MIR548AY-201ENST00000617669 107 ntBASIC2.31□□□□□ -2.04
VPS53Q5VIR6 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.31□□□□□ -2.04
VPS53Q5VIR6 AC068647.2-201ENST00000637380 353 ntBASIC2.31□□□□□ -2.04
VPS53Q5VIR6 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.31□□□□□ -2.04
VPS53Q5VIR6 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
VPS53Q5VIR6 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
VPS53Q5VIR6 AC134026.1-201ENST00000623249 2239 ntBASIC2.3□□□□□ -2.04
VPS53Q5VIR6 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.3□□□□□ -2.04
VPS53Q5VIR6 AC092881.1-201ENST00000638218 2733 ntBASIC2.3□□□□□ -2.04
VPS53Q5VIR6 RNA5SP276-201ENST00000362580 94 ntBASIC2.3□□□□□ -2.04
VPS53Q5VIR6 RNU6-1205P-201ENST00000363625 106 ntBASIC2.3□□□□□ -2.04
VPS53Q5VIR6 RNU6-682P-201ENST00000363843 106 ntBASIC2.3□□□□□ -2.04
VPS53Q5VIR6 RNU1-96P-201ENST00000364163 162 ntBASIC2.3□□□□□ -2.04
VPS53Q5VIR6 Y_RNA.233-201ENST00000364407 101 ntBASIC2.3□□□□□ -2.04
VPS53Q5VIR6 U8.7-201ENST00000364940 136 ntBASIC2.3□□□□□ -2.04
VPS53Q5VIR6 MIR526A2-201ENST00000390198 65 ntBASIC2.3□□□□□ -2.04
VPS53Q5VIR6 RNU6-493P-201ENST00000391321 108 ntBASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms