Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 SNORA75.6-201ENST00000391318 127 ntBASIC0.89□□□□□ -2.27
CCDC40Q4G0X9 RNU6-370P-201ENST00000411008 104 ntBASIC0.89□□□□□ -2.27
CCDC40Q4G0X9 PDCL2P1-201ENST00000419302 352 ntBASIC0.89□□□□□ -2.27
CCDC40Q4G0X9 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.89□□□□□ -2.27
CCDC40Q4G0X9 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.89□□□□□ -2.27
CCDC40Q4G0X9 RNU6-264P-201ENST00000517134 104 ntBASIC0.89□□□□□ -2.27
CCDC40Q4G0X9 MIR3973-201ENST00000579824 107 ntBASIC0.89□□□□□ -2.27
CCDC40Q4G0X9 AC006380.1-201ENST00000603598 186 ntBASIC0.89□□□□□ -2.27
CCDC40Q4G0X9 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.89□□□□□ -2.27
CCDC40Q4G0X9 WT1-AS_8.1-201ENST00000615200 275 ntBASIC0.89□□□□□ -2.27
CCDC40Q4G0X9 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.89□□□□□ -2.27
CCDC40Q4G0X9 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.89□□□□□ -2.27
CCDC40Q4G0X9 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
CCDC40Q4G0X9 RNU6-310P-201ENST00000384655 107 ntBASIC0.88□□□□□ -2.27
CCDC40Q4G0X9 RNU2-54P-201ENST00000410299 190 ntBASIC0.88□□□□□ -2.27
CCDC40Q4G0X9 RNU2-64P-201ENST00000411315 191 ntBASIC0.88□□□□□ -2.27
CCDC40Q4G0X9 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC0.88□□□□□ -2.27
CCDC40Q4G0X9 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.88□□□□□ -2.27
CCDC40Q4G0X9 RNU7-90P-201ENST00000459216 62 ntBASIC0.88□□□□□ -2.27
CCDC40Q4G0X9 RNU6-351P-201ENST00000516097 100 ntBASIC0.88□□□□□ -2.27
CCDC40Q4G0X9 RNU6-113P-201ENST00000516653 101 ntBASIC0.88□□□□□ -2.27
CCDC40Q4G0X9 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.88□□□□□ -2.27
CCDC40Q4G0X9 AC011604.1-201ENST00000545978 196 ntBASIC0.88□□□□□ -2.27
CCDC40Q4G0X9 MIR4762-201ENST00000585261 75 ntBASIC0.88□□□□□ -2.27
CCDC40Q4G0X9 AC240442.1-201ENST00000616055 283 ntBASIC0.88□□□□□ -2.27
CCDC40Q4G0X9 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.88□□□□□ -2.27
CCDC40Q4G0X9 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
CCDC40Q4G0X9 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
CCDC40Q4G0X9 RNU6-1188P-201ENST00000363795 107 ntBASIC0.87□□□□□ -2.27
CCDC40Q4G0X9 MIR942-201ENST00000401111 86 ntBASIC0.87□□□□□ -2.27
CCDC40Q4G0X9 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.87□□□□□ -2.27
CCDC40Q4G0X9 MIR1298-201ENST00000408783 112 ntBASIC0.87□□□□□ -2.27
CCDC40Q4G0X9 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.87□□□□□ -2.27
CCDC40Q4G0X9 FCF1P4-201ENST00000448326 183 ntBASIC0.87□□□□□ -2.27
CCDC40Q4G0X9 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.87□□□□□ -2.27
CCDC40Q4G0X9 PSMC1P5-201ENST00000512850 177 ntBASIC0.87□□□□□ -2.27
CCDC40Q4G0X9 AC090142.3-201ENST00000519012 385 ntBASIC0.87□□□□□ -2.27
CCDC40Q4G0X9 TPTEP1-208ENST00000636884 213 ntBASIC0.87□□□□□ -2.27
CCDC40Q4G0X9 Y_RNA.172-201ENST00000363765 102 ntBASIC0.86□□□□□ -2.27
CCDC40Q4G0X9 SNORD114-22-201ENST00000365423 72 ntBASIC0.86□□□□□ -2.27
CCDC40Q4G0X9 RNU6-192P-201ENST00000391253 100 ntBASIC0.86□□□□□ -2.27
CCDC40Q4G0X9 RPS20P10-201ENST00000451209 253 ntBASIC0.86□□□□□ -2.27
CCDC40Q4G0X9 RPL30P15-201ENST00000457129 321 ntBASIC0.86□□□□□ -2.27
CCDC40Q4G0X9 SNORA25.10-201ENST00000515926 124 ntBASIC0.86□□□□□ -2.27
CCDC40Q4G0X9 RNU6-197P-201ENST00000516680 100 ntBASIC0.86□□□□□ -2.27
CCDC40Q4G0X9 RNU7-4P-201ENST00000516961 62 ntBASIC0.86□□□□□ -2.27
CCDC40Q4G0X9 AC136443.5-201ENST00000603741 370 ntBASIC0.86□□□□□ -2.27
CCDC40Q4G0X9 AC139792.2-201ENST00000624218 587 ntBASIC0.86□□□□□ -2.27
CCDC40Q4G0X9 MIR6866-201ENST00000638146 69 ntBASIC0.86□□□□□ -2.27
CCDC40Q4G0X9 Y_RNA.191-201ENST00000363972 113 ntBASIC0.85□□□□□ -2.27
CCDC40Q4G0X9 RNY3P11-201ENST00000364153 102 ntBASIC0.85□□□□□ -2.27
CCDC40Q4G0X9 Y_RNA.238-201ENST00000364441 102 ntBASIC0.85□□□□□ -2.27
CCDC40Q4G0X9 SNORD81.2-201ENST00000365153 76 ntBASIC0.85□□□□□ -2.27
CCDC40Q4G0X9 RNU6-890P-201ENST00000384121 107 ntBASIC0.85□□□□□ -2.27
CCDC40Q4G0X9 RNY3P4-201ENST00000384428 101 ntBASIC0.85□□□□□ -2.27
CCDC40Q4G0X9 MIR608-201ENST00000384820 100 ntBASIC0.85□□□□□ -2.27
CCDC40Q4G0X9 MIR516B2-201ENST00000385190 85 ntBASIC0.85□□□□□ -2.27
CCDC40Q4G0X9 RNU2-61P-201ENST00000411069 191 ntBASIC0.85□□□□□ -2.27
CCDC40Q4G0X9 RNU6-1199P-201ENST00000411249 104 ntBASIC0.85□□□□□ -2.27
CCDC40Q4G0X9 RNU6-1304P-201ENST00000411374 106 ntBASIC0.85□□□□□ -2.27
CCDC40Q4G0X9 AC006461.1-201ENST00000412637 326 ntBASIC0.85□□□□□ -2.27
CCDC40Q4G0X9 AC144568.1-201ENST00000520139 137 ntBASIC0.85□□□□□ -2.27
CCDC40Q4G0X9 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.85□□□□□ -2.27
CCDC40Q4G0X9 MIR5690-201ENST00000583739 73 ntBASIC0.85□□□□□ -2.27
CCDC40Q4G0X9 MIR4653-201ENST00000585107 83 ntBASIC0.85□□□□□ -2.27
CCDC40Q4G0X9 AC005176.2-201ENST00000596933 147 ntBASIC0.85□□□□□ -2.27
CCDC40Q4G0X9 MIR6504-201ENST00000613520 61 ntBASIC0.85□□□□□ -2.27
CCDC40Q4G0X9 RNA5SP264-201ENST00000363115 107 ntBASIC0.84□□□□□ -2.27
CCDC40Q4G0X9 Y_RNA.253-201ENST00000364562 112 ntBASIC0.84□□□□□ -2.27
CCDC40Q4G0X9 RNU1-93P-201ENST00000364704 169 ntBASIC0.84□□□□□ -2.27
CCDC40Q4G0X9 RNU6-20P-201ENST00000384106 107 ntBASIC0.84□□□□□ -2.27
CCDC40Q4G0X9 MIR499A-201ENST00000384903 122 ntBASIC0.84□□□□□ -2.27
CCDC40Q4G0X9 MIR100-201ENST00000385259 80 ntBASIC0.84□□□□□ -2.27
CCDC40Q4G0X9 MT-TL1-201ENST00000386347 75 ntBASIC0.84□□□□□ -2.27
CCDC40Q4G0X9 RPS3AP1-201ENST00000413190 320 ntBASIC0.84□□□□□ -2.27
CCDC40Q4G0X9 MRPS18CP6-201ENST00000423587 223 ntBASIC0.84□□□□□ -2.27
CCDC40Q4G0X9 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.84□□□□□ -2.27
CCDC40Q4G0X9 RNU7-169P-201ENST00000459456 61 ntBASIC0.84□□□□□ -2.27
CCDC40Q4G0X9 RNU6-470P-201ENST00000515954 104 ntBASIC0.84□□□□□ -2.27
CCDC40Q4G0X9 MTND4LP26-201ENST00000518144 282 ntBASIC0.84□□□□□ -2.27
CCDC40Q4G0X9 AC136628.3-201ENST00000521868 290 ntBASIC0.84□□□□□ -2.27
CCDC40Q4G0X9 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.84□□□□□ -2.27
CCDC40Q4G0X9 AC106800.4-201ENST00000614905 153 ntBASIC0.84□□□□□ -2.27
CCDC40Q4G0X9 RNU6-626P-201ENST00000363354 107 ntBASIC0.83□□□□□ -2.28
CCDC40Q4G0X9 RNU6-324P-201ENST00000363957 106 ntBASIC0.83□□□□□ -2.28
CCDC40Q4G0X9 Y_RNA.224-201ENST00000364308 111 ntBASIC0.83□□□□□ -2.28
CCDC40Q4G0X9 Y_RNA.446-201ENST00000384178 104 ntBASIC0.83□□□□□ -2.28
CCDC40Q4G0X9 MIR520E-201ENST00000384867 87 ntBASIC0.83□□□□□ -2.28
CCDC40Q4G0X9 MIR522-201ENST00000385071 87 ntBASIC0.83□□□□□ -2.28
CCDC40Q4G0X9 SNORD78.2-201ENST00000391076 69 ntBASIC0.83□□□□□ -2.28
CCDC40Q4G0X9 RNU6-876P-201ENST00000391295 104 ntBASIC0.83□□□□□ -2.28
CCDC40Q4G0X9 CHEK2P4-201ENST00000450340 246 ntBASIC0.83□□□□□ -2.28
CCDC40Q4G0X9 RNU6-436P-201ENST00000516171 114 ntBASIC0.83□□□□□ -2.28
CCDC40Q4G0X9 RNA5SP255-201ENST00000516370 107 ntBASIC0.83□□□□□ -2.28
CCDC40Q4G0X9 RNU6-966P-201ENST00000516479 104 ntBASIC0.83□□□□□ -2.28
CCDC40Q4G0X9 RNU6-1012P-201ENST00000516606 109 ntBASIC0.83□□□□□ -2.28
CCDC40Q4G0X9 SNORA74.3-201ENST00000517108 154 ntBASIC0.83□□□□□ -2.28
CCDC40Q4G0X9 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.83□□□□□ -2.28
CCDC40Q4G0X9 AC022616.4-201ENST00000522985 181 ntBASIC0.83□□□□□ -2.28
CCDC40Q4G0X9 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC0.83□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 118.4 ms