Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 AC024614.3-201ENST00000637860 256 ntBASIC0.31□□□□□ -2.36
ZNF404Q494X3 Y_RNA.112-201ENST00000363250 102 ntBASIC0.3□□□□□ -2.36
ZNF404Q494X3 SNORD113.3-201ENST00000364630 78 ntBASIC0.3□□□□□ -2.36
ZNF404Q494X3 Y_RNA.557-201ENST00000384680 107 ntBASIC0.3□□□□□ -2.36
ZNF404Q494X3 MIR216A-201ENST00000385063 110 ntBASIC0.3□□□□□ -2.36
ZNF404Q494X3 SNORD105-201ENST00000386910 85 ntBASIC0.3□□□□□ -2.36
ZNF404Q494X3 MIR1827-201ENST00000408549 66 ntBASIC0.3□□□□□ -2.36
ZNF404Q494X3 RNU2-16P-201ENST00000410712 136 ntBASIC0.3□□□□□ -2.36
ZNF404Q494X3 RNU6-373P-201ENST00000411247 98 ntBASIC0.3□□□□□ -2.36
ZNF404Q494X3 AL390729.2-201ENST00000416137 156 ntBASIC0.3□□□□□ -2.36
ZNF404Q494X3 MTND1P1-201ENST00000445453 368 ntBASIC0.3□□□□□ -2.36
ZNF404Q494X3 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.3□□□□□ -2.36
ZNF404Q494X3 SNORD5.1-201ENST00000458800 75 ntBASIC0.3□□□□□ -2.36
ZNF404Q494X3 SNORA40.9-201ENST00000515895 93 ntBASIC0.3□□□□□ -2.36
ZNF404Q494X3 RN7SKP12-201ENST00000516275 143 ntBASIC0.3□□□□□ -2.36
ZNF404Q494X3 Y_RNA.688-201ENST00000516565 95 ntBASIC0.3□□□□□ -2.36
ZNF404Q494X3 RNU6-1088P-201ENST00000516850 104 ntBASIC0.3□□□□□ -2.36
ZNF404Q494X3 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.3□□□□□ -2.36
ZNF404Q494X3 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.3□□□□□ -2.36
ZNF404Q494X3 MIR4300-201ENST00000581016 96 ntBASIC0.3□□□□□ -2.36
ZNF404Q494X3 AF250324.2-201ENST00000608299 610 ntBASIC0.3□□□□□ -2.36
ZNF404Q494X3 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.3□□□□□ -2.36
ZNF404Q494X3 RNY1P16-201ENST00000363063 111 ntBASIC0.29□□□□□ -2.36
ZNF404Q494X3 SNORD114-23-201ENST00000363536 72 ntBASIC0.29□□□□□ -2.36
ZNF404Q494X3 RNU6-1013P-201ENST00000384180 107 ntBASIC0.29□□□□□ -2.36
ZNF404Q494X3 RNU6-1304P-201ENST00000411374 106 ntBASIC0.29□□□□□ -2.36
ZNF404Q494X3 MTND4LP16-201ENST00000440828 295 ntBASIC0.29□□□□□ -2.36
ZNF404Q494X3 MTND1P17-201ENST00000448961 204 ntBASIC0.29□□□□□ -2.36
ZNF404Q494X3 RNU6-1337P-201ENST00000516525 95 ntBASIC0.29□□□□□ -2.36
ZNF404Q494X3 RNU6-1314P-201ENST00000517139 104 ntBASIC0.29□□□□□ -2.36
ZNF404Q494X3 AC005014.2-201ENST00000607795 599 ntBASIC0.29□□□□□ -2.36
ZNF404Q494X3 AC007742.2-201ENST00000618226 398 ntBASIC0.29□□□□□ -2.36
ZNF404Q494X3 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.29□□□□□ -2.36
ZNF404Q494X3 AC100810.6-201ENST00000638068 285 ntBASIC0.29□□□□□ -2.36
ZNF404Q494X3 RNU6-874P-201ENST00000362390 105 ntBASIC0.28□□□□□ -2.36
ZNF404Q494X3 RNU6-1084P-201ENST00000362498 107 ntBASIC0.28□□□□□ -2.36
ZNF404Q494X3 RNU6-1090P-201ENST00000364065 94 ntBASIC0.28□□□□□ -2.36
ZNF404Q494X3 RNU6-654P-201ENST00000364373 107 ntBASIC0.28□□□□□ -2.36
ZNF404Q494X3 Y_RNA.253-201ENST00000364562 112 ntBASIC0.28□□□□□ -2.36
ZNF404Q494X3 Y_RNA.361-201ENST00000365515 120 ntBASIC0.28□□□□□ -2.36
ZNF404Q494X3 RNY1P8-201ENST00000383970 114 ntBASIC0.28□□□□□ -2.36
ZNF404Q494X3 RNU6-1310P-201ENST00000384153 107 ntBASIC0.28□□□□□ -2.36
ZNF404Q494X3 SNORA2B-201ENST00000384583 137 ntBASIC0.28□□□□□ -2.36
ZNF404Q494X3 MIR613-201ENST00000385248 95 ntBASIC0.28□□□□□ -2.36
ZNF404Q494X3 AC009161.1-201ENST00000417306 376 ntBASIC0.28□□□□□ -2.36
ZNF404Q494X3 MLLT10P1-201ENST00000418346 262 ntBASIC0.28□□□□□ -2.36
ZNF404Q494X3 MRPS18CP6-201ENST00000423587 223 ntBASIC0.28□□□□□ -2.36
ZNF404Q494X3 AC005534.2-201ENST00000431047 433 ntBASIC0.28□□□□□ -2.36
ZNF404Q494X3 AL392103.1-201ENST00000447000 198 ntBASIC0.28□□□□□ -2.36
ZNF404Q494X3 U8.22-201ENST00000459141 133 ntBASIC0.28□□□□□ -2.36
ZNF404Q494X3 SNORD123-201ENST00000459473 70 ntBASIC0.28□□□□□ -2.36
ZNF404Q494X3 SNORD45.4-201ENST00000516629 73 ntBASIC0.28□□□□□ -2.36
ZNF404Q494X3 RNU6-566P-201ENST00000516790 107 ntBASIC0.28□□□□□ -2.36
ZNF404Q494X3 AC105029.1-201ENST00000520250 669 ntBASIC0.28□□□□□ -2.36
ZNF404Q494X3 RN7SL793P-201ENST00000583259 296 ntBASIC0.28□□□□□ -2.36
ZNF404Q494X3 MIR1-1-201ENST00000362147 71 ntBASIC0.27□□□□□ -2.37
ZNF404Q494X3 SNORD115-30-201ENST00000364117 82 ntBASIC0.27□□□□□ -2.37
ZNF404Q494X3 Y_RNA.393-201ENST00000383936 102 ntBASIC0.27□□□□□ -2.37
ZNF404Q494X3 MIR522-201ENST00000385071 87 ntBASIC0.27□□□□□ -2.37
ZNF404Q494X3 MIR140-201ENST00000385282 100 ntBASIC0.27□□□□□ -2.37
ZNF404Q494X3 MTCO2P12-201ENST00000427426 682 ntBASIC0.27□□□□□ -2.37
ZNF404Q494X3 MTND1P4-201ENST00000435196 415 ntBASIC0.27□□□□□ -2.37
ZNF404Q494X3 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.27□□□□□ -2.37
ZNF404Q494X3 HMGN2P32-201ENST00000444648 269 ntBASIC0.27□□□□□ -2.37
ZNF404Q494X3 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC0.27□□□□□ -2.37
ZNF404Q494X3 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.27□□□□□ -2.37
ZNF404Q494X3 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.27□□□□□ -2.37
ZNF404Q494X3 SNORA68.3-201ENST00000515906 83 ntBASIC0.27□□□□□ -2.37
ZNF404Q494X3 AC109635.3-201ENST00000529536 185 ntBASIC0.27□□□□□ -2.37
ZNF404Q494X3 MIR6516-201ENST00000630554 81 ntBASIC0.27□□□□□ -2.37
ZNF404Q494X3 MIR4251-201ENST00000635819 61 ntBASIC0.27□□□□□ -2.37
ZNF404Q494X3 AC134026.1-201ENST00000623249 2239 ntBASIC0.27□□□□□ -2.37
ZNF404Q494X3 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.27□□□□□ -2.37
ZNF404Q494X3 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.27□□□□□ -2.37
ZNF404Q494X3 Y_RNA.51-201ENST00000362725 102 ntBASIC0.26□□□□□ -2.37
ZNF404Q494X3 snoU2-30.1-201ENST00000365012 70 ntBASIC0.26□□□□□ -2.37
ZNF404Q494X3 RNU6-318P-201ENST00000384283 103 ntBASIC0.26□□□□□ -2.37
ZNF404Q494X3 RNU6-831P-201ENST00000384548 107 ntBASIC0.26□□□□□ -2.37
ZNF404Q494X3 MIR1302-7-201ENST00000408841 72 ntBASIC0.26□□□□□ -2.37
ZNF404Q494X3 AL139396.1-201ENST00000421137 167 ntBASIC0.26□□□□□ -2.37
ZNF404Q494X3 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.26□□□□□ -2.37
ZNF404Q494X3 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.26□□□□□ -2.37
ZNF404Q494X3 RNU6-314P-201ENST00000516574 104 ntBASIC0.26□□□□□ -2.37
ZNF404Q494X3 AC022616.4-201ENST00000522985 181 ntBASIC0.26□□□□□ -2.37
ZNF404Q494X3 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC0.26□□□□□ -2.37
ZNF404Q494X3 MIR4790-201ENST00000577799 79 ntBASIC0.26□□□□□ -2.37
ZNF404Q494X3 AC011712.1-201ENST00000588959 234 ntBASIC0.26□□□□□ -2.37
ZNF404Q494X3 AC008133.2-201ENST00000624540 351 ntBASIC0.26□□□□□ -2.37
ZNF404Q494X3 Y_RNA.358-201ENST00000365491 99 ntBASIC0.25□□□□□ -2.37
ZNF404Q494X3 RNA5SP95-201ENST00000410319 137 ntBASIC0.25□□□□□ -2.37
ZNF404Q494X3 SNORD12B-201ENST00000410433 91 ntBASIC0.25□□□□□ -2.37
ZNF404Q494X3 RNU6-177P-201ENST00000411257 104 ntBASIC0.25□□□□□ -2.37
ZNF404Q494X3 MTATP6P17-201ENST00000431030 672 ntBASIC0.25□□□□□ -2.37
ZNF404Q494X3 AL353997.1-201ENST00000432936 108 ntBASIC0.25□□□□□ -2.37
ZNF404Q494X3 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.25□□□□□ -2.37
ZNF404Q494X3 AC018462.2-201ENST00000605375 395 ntBASIC0.25□□□□□ -2.37
ZNF404Q494X3 AL355073.2-201ENST00000612106 557 ntBASIC0.25□□□□□ -2.37
ZNF404Q494X3 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.25□□□□□ -2.37
ZNF404Q494X3 AC010487.4-201ENST00000637027 61 ntBASIC0.25□□□□□ -2.37
ZNF404Q494X3 Y_RNA.2-201ENST00000362330 96 ntBASIC0.24□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms