Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.56□□□□□ -1.84
FOXC1Q12948 ZNF962P-201ENST00000443465 3140 ntBASIC3.56□□□□□ -1.84
FOXC1Q12948 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
FOXC1Q12948 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
FOXC1Q12948 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
FOXC1Q12948 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
FOXC1Q12948 RNA5SP374-201ENST00000362939 125 ntBASIC3.55□□□□□ -1.84
FOXC1Q12948 RNU6-546P-201ENST00000383991 107 ntBASIC3.55□□□□□ -1.84
FOXC1Q12948 RNU6-129P-201ENST00000391022 107 ntBASIC3.55□□□□□ -1.84
FOXC1Q12948 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.55□□□□□ -1.84
FOXC1Q12948 AC108751.2-201ENST00000469993 231 ntBASIC3.55□□□□□ -1.84
FOXC1Q12948 AC090821.2-201ENST00000523552 176 ntBASIC3.55□□□□□ -1.84
FOXC1Q12948 MIR7851-201ENST00000610611 160 ntBASIC3.55□□□□□ -1.84
FOXC1Q12948 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.55□□□□□ -1.84
FOXC1Q12948 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
FOXC1Q12948 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
FOXC1Q12948 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
FOXC1Q12948 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC3.54□□□□□ -1.84
FOXC1Q12948 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
FOXC1Q12948 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
FOXC1Q12948 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
FOXC1Q12948 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC3.54□□□□□ -1.84
FOXC1Q12948 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.54□□□□□ -1.84
FOXC1Q12948 SNORA22.1-201ENST00000362701 134 ntBASIC3.54□□□□□ -1.84
FOXC1Q12948 MIR199A2-201ENST00000385289 110 ntBASIC3.54□□□□□ -1.84
FOXC1Q12948 RPL23AP48-201ENST00000406913 488 ntBASIC3.54□□□□□ -1.84
FOXC1Q12948 SNORA3C-201ENST00000408792 125 ntBASIC3.54□□□□□ -1.84
FOXC1Q12948 RNA5SP146-201ENST00000410743 123 ntBASIC3.54□□□□□ -1.84
FOXC1Q12948 RNA5SP38-201ENST00000410750 119 ntBASIC3.54□□□□□ -1.84
FOXC1Q12948 RNU2-63P-201ENST00000410792 194 ntBASIC3.54□□□□□ -1.84
FOXC1Q12948 AC125388.1-201ENST00000459631 156 ntBASIC3.54□□□□□ -1.84
FOXC1Q12948 AC114811.1-201ENST00000507207 168 ntBASIC3.54□□□□□ -1.84
FOXC1Q12948 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.54□□□□□ -1.84
FOXC1Q12948 AC007536.1-201ENST00000533382 349 ntBASIC3.54□□□□□ -1.84
FOXC1Q12948 CTSLP2-204ENST00000629029 392 ntBASIC3.54□□□□□ -1.84
FOXC1Q12948 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC3.54□□□□□ -1.84
FOXC1Q12948 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
FOXC1Q12948 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
FOXC1Q12948 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.54□□□□□ -1.84
FOXC1Q12948 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
FOXC1Q12948 AC005336.3-201ENST00000623833 2679 ntBASIC3.54□□□□□ -1.84
FOXC1Q12948 GABRG2-229ENST00000641017 3628 ntBASIC3.53□□□□□ -1.84
FOXC1Q12948 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
FOXC1Q12948 AC008264.2-201ENST00000610193 3731 ntBASIC3.53□□□□□ -1.84
FOXC1Q12948 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
FOXC1Q12948 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
FOXC1Q12948 RNU4-35P-201ENST00000362588 141 ntBASIC3.53□□□□□ -1.84
FOXC1Q12948 Y_RNA.57-201ENST00000362806 113 ntBASIC3.53□□□□□ -1.84
FOXC1Q12948 RNA5SP126-201ENST00000365092 109 ntBASIC3.53□□□□□ -1.84
FOXC1Q12948 RNA5SP252-201ENST00000391131 119 ntBASIC3.53□□□□□ -1.84
FOXC1Q12948 TRIAP1P1-201ENST00000427062 225 ntBASIC3.53□□□□□ -1.84
FOXC1Q12948 AC083863.1-201ENST00000438811 231 ntBASIC3.53□□□□□ -1.84
FOXC1Q12948 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.53□□□□□ -1.84
FOXC1Q12948 RN7SL504P-201ENST00000494496 287 ntBASIC3.53□□□□□ -1.84
FOXC1Q12948 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.53□□□□□ -1.84
FOXC1Q12948 RNU6-1041P-201ENST00000516254 102 ntBASIC3.53□□□□□ -1.84
FOXC1Q12948 SNORA70.18-201ENST00000516696 98 ntBASIC3.53□□□□□ -1.84
FOXC1Q12948 uc_338.25-201ENST00000613756 156 ntBASIC3.53□□□□□ -1.84
FOXC1Q12948 AC002546.1-201ENST00000588041 2504 ntBASIC3.53□□□□□ -1.84
FOXC1Q12948 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC3.52□□□□□ -1.85
FOXC1Q12948 RNU6-1094P-201ENST00000362416 104 ntBASIC3.52□□□□□ -1.85
FOXC1Q12948 SNORD115-37-201ENST00000363768 82 ntBASIC3.52□□□□□ -1.85
FOXC1Q12948 SNORA40.18-201ENST00000391200 128 ntBASIC3.52□□□□□ -1.85
FOXC1Q12948 SNORA26.6-201ENST00000391256 115 ntBASIC3.52□□□□□ -1.85
FOXC1Q12948 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
FOXC1Q12948 RNU7-2P-201ENST00000516096 62 ntBASIC3.52□□□□□ -1.85
FOXC1Q12948 RNU6-917P-201ENST00000516294 104 ntBASIC3.52□□□□□ -1.85
FOXC1Q12948 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
FOXC1Q12948 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
FOXC1Q12948 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
FOXC1Q12948 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.51□□□□□ -1.85
FOXC1Q12948 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
FOXC1Q12948 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
FOXC1Q12948 RNU6-624P-201ENST00000363411 107 ntBASIC3.51□□□□□ -1.85
FOXC1Q12948 RNU6-1307P-201ENST00000391012 103 ntBASIC3.51□□□□□ -1.85
FOXC1Q12948 RNA5SP482-201ENST00000391269 118 ntBASIC3.51□□□□□ -1.85
FOXC1Q12948 RNU2-48P-201ENST00000410694 191 ntBASIC3.51□□□□□ -1.85
FOXC1Q12948 SNORA31.1-201ENST00000515993 133 ntBASIC3.51□□□□□ -1.85
FOXC1Q12948 RNU6-991P-201ENST00000516168 107 ntBASIC3.51□□□□□ -1.85
FOXC1Q12948 SNORA31.5-201ENST00000516190 133 ntBASIC3.51□□□□□ -1.85
FOXC1Q12948 RNA5SP341-201ENST00000516261 117 ntBASIC3.51□□□□□ -1.85
FOXC1Q12948 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.51□□□□□ -1.85
FOXC1Q12948 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
FOXC1Q12948 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
FOXC1Q12948 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
FOXC1Q12948 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
FOXC1Q12948 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.5□□□□□ -1.85
FOXC1Q12948 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
FOXC1Q12948 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.5□□□□□ -1.85
FOXC1Q12948 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC3.5□□□□□ -1.85
FOXC1Q12948 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC3.5□□□□□ -1.85
FOXC1Q12948 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
FOXC1Q12948 RNU1-15P-201ENST00000353977 144 ntBASIC3.5□□□□□ -1.85
FOXC1Q12948 SNORA5B-201ENST00000363786 132 ntBASIC3.5□□□□□ -1.85
FOXC1Q12948 SNORA80A-201ENST00000363922 136 ntBASIC3.5□□□□□ -1.85
FOXC1Q12948 Y_RNA.340-201ENST00000365330 92 ntBASIC3.5□□□□□ -1.85
FOXC1Q12948 RNU6-1083P-201ENST00000384022 107 ntBASIC3.5□□□□□ -1.85
FOXC1Q12948 Y_RNA.567-201ENST00000384736 106 ntBASIC3.5□□□□□ -1.85
FOXC1Q12948 RNU6ATAC41P-201ENST00000408600 126 ntBASIC3.5□□□□□ -1.85
FOXC1Q12948 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms