Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AC100821.1-201ENST00000523153 2479 ntBASIC2.11□□□□□ -2.07
HOXA4Q00056 AP006437.1-201ENST00000641440 3685 ntBASIC2.1□□□□□ -2.07
HOXA4Q00056 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
HOXA4Q00056 MIR449A-201ENST00000362113 91 ntBASIC2.1□□□□□ -2.07
HOXA4Q00056 RNA5SP289-201ENST00000362332 137 ntBASIC2.1□□□□□ -2.07
HOXA4Q00056 Y_RNA.111-201ENST00000363248 100 ntBASIC2.1□□□□□ -2.07
HOXA4Q00056 RNU6-23P-201ENST00000363283 107 ntBASIC2.1□□□□□ -2.07
HOXA4Q00056 RNU6-1209P-201ENST00000363655 107 ntBASIC2.1□□□□□ -2.07
HOXA4Q00056 SNORA38-201ENST00000363946 132 ntBASIC2.1□□□□□ -2.07
HOXA4Q00056 MIR613-201ENST00000385248 95 ntBASIC2.1□□□□□ -2.07
HOXA4Q00056 RNA5SP323-201ENST00000391094 133 ntBASIC2.1□□□□□ -2.07
HOXA4Q00056 AL512604.1-201ENST00000404812 257 ntBASIC2.1□□□□□ -2.07
HOXA4Q00056 Y_RNA.621-201ENST00000411065 96 ntBASIC2.1□□□□□ -2.07
HOXA4Q00056 RNA5SP492-201ENST00000411330 114 ntBASIC2.1□□□□□ -2.07
HOXA4Q00056 AC006461.1-201ENST00000412637 326 ntBASIC2.1□□□□□ -2.07
HOXA4Q00056 BX510359.4-201ENST00000423750 193 ntBASIC2.1□□□□□ -2.07
HOXA4Q00056 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXA4Q00056 AL163195.1-201ENST00000496941 348 ntBASIC2.1□□□□□ -2.07
HOXA4Q00056 RNU6-426P-201ENST00000516464 97 ntBASIC2.1□□□□□ -2.07
HOXA4Q00056 RPPH1-2P-201ENST00000516688 293 ntBASIC2.1□□□□□ -2.07
HOXA4Q00056 MIR3126-201ENST00000577443 74 ntBASIC2.1□□□□□ -2.07
HOXA4Q00056 AL021707.8-201ENST00000609428 183 ntBASIC2.1□□□□□ -2.07
HOXA4Q00056 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
HOXA4Q00056 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
HOXA4Q00056 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
HOXA4Q00056 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.1□□□□□ -2.07
HOXA4Q00056 ZNF271P-202ENST00000465539 1970 ntBASIC2.09□□□□□ -2.07
HOXA4Q00056 RNU6-151P-201ENST00000364158 107 ntBASIC2.09□□□□□ -2.07
HOXA4Q00056 Y_RNA.796-201ENST00000364268 102 ntBASIC2.09□□□□□ -2.07
HOXA4Q00056 Y_RNA.267-201ENST00000364679 109 ntBASIC2.09□□□□□ -2.07
HOXA4Q00056 Y_RNA.799-201ENST00000364992 102 ntBASIC2.09□□□□□ -2.07
HOXA4Q00056 RNU6-728P-201ENST00000365375 104 ntBASIC2.09□□□□□ -2.07
HOXA4Q00056 SNORA8-201ENST00000384574 139 ntBASIC2.09□□□□□ -2.07
HOXA4Q00056 MIR520G-201ENST00000385064 90 ntBASIC2.09□□□□□ -2.07
HOXA4Q00056 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.09□□□□□ -2.07
HOXA4Q00056 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.09□□□□□ -2.07
HOXA4Q00056 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.09□□□□□ -2.07
HOXA4Q00056 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.09□□□□□ -2.07
HOXA4Q00056 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.09□□□□□ -2.07
HOXA4Q00056 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.09□□□□□ -2.07
HOXA4Q00056 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.09□□□□□ -2.07
HOXA4Q00056 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.07
HOXA4Q00056 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.09□□□□□ -2.08
HOXA4Q00056 AC018630.2-201ENST00000534866 2403 ntBASIC2.08□□□□□ -2.08
HOXA4Q00056 SNORD45.3-201ENST00000363836 72 ntBASIC2.08□□□□□ -2.08
HOXA4Q00056 RNU1-51P-201ENST00000365345 176 ntBASIC2.08□□□□□ -2.08
HOXA4Q00056 Y_RNA.400-201ENST00000383963 111 ntBASIC2.08□□□□□ -2.08
HOXA4Q00056 RNU6-643P-201ENST00000384018 107 ntBASIC2.08□□□□□ -2.08
HOXA4Q00056 RNY3P5-201ENST00000384127 102 ntBASIC2.08□□□□□ -2.08
HOXA4Q00056 CST2P1-201ENST00000425770 87 ntBASIC2.08□□□□□ -2.08
HOXA4Q00056 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.08□□□□□ -2.08
HOXA4Q00056 TRBV12-1-201ENST00000479785 344 ntBASIC2.08□□□□□ -2.08
HOXA4Q00056 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC2.08□□□□□ -2.08
HOXA4Q00056 AC107027.2-201ENST00000512197 115 ntBASIC2.08□□□□□ -2.08
HOXA4Q00056 AC004486.1-201ENST00000546846 233 ntBASIC2.08□□□□□ -2.08
HOXA4Q00056 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.08□□□□□ -2.08
HOXA4Q00056 MIR3162-201ENST00000581818 82 ntBASIC2.08□□□□□ -2.08
HOXA4Q00056 AC046143.2-201ENST00000609789 160 ntBASIC2.08□□□□□ -2.08
HOXA4Q00056 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.08□□□□□ -2.08
HOXA4Q00056 Y_RNA.778-201ENST00000620203 90 ntBASIC2.08□□□□□ -2.08
HOXA4Q00056 MTND1P7-201ENST00000632801 297 ntBASIC2.08□□□□□ -2.08
HOXA4Q00056 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
HOXA4Q00056 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
HOXA4Q00056 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
HOXA4Q00056 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
HOXA4Q00056 ZNF702P-202ENST00000434269 1966 ntBASIC2.07□□□□□ -2.08
HOXA4Q00056 RNU1-58P-201ENST00000362413 163 ntBASIC2.07□□□□□ -2.08
HOXA4Q00056 RNU6-81P-201ENST00000365608 104 ntBASIC2.07□□□□□ -2.08
HOXA4Q00056 SNORA20-201ENST00000384662 132 ntBASIC2.07□□□□□ -2.08
HOXA4Q00056 MIR27B-201ENST00000385129 97 ntBASIC2.07□□□□□ -2.08
HOXA4Q00056 MIR569-201ENST00000385228 96 ntBASIC2.07□□□□□ -2.08
HOXA4Q00056 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.07□□□□□ -2.08
HOXA4Q00056 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.07□□□□□ -2.08
HOXA4Q00056 RNU6-341P-201ENST00000516973 96 ntBASIC2.07□□□□□ -2.08
HOXA4Q00056 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.07□□□□□ -2.08
HOXA4Q00056 MIR2681-201ENST00000581814 105 ntBASIC2.07□□□□□ -2.08
HOXA4Q00056 MIR3670-2-201ENST00000582974 65 ntBASIC2.07□□□□□ -2.08
HOXA4Q00056 MIR3670-1-201ENST00000584160 65 ntBASIC2.07□□□□□ -2.08
HOXA4Q00056 MIR3670-3-201ENST00000584855 65 ntBASIC2.07□□□□□ -2.08
HOXA4Q00056 MIR3670-4-201ENST00000612260 65 ntBASIC2.07□□□□□ -2.08
HOXA4Q00056 uc_338.4-201ENST00000616635 176 ntBASIC2.07□□□□□ -2.08
HOXA4Q00056 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.07□□□□□ -2.08
HOXA4Q00056 Y_RNA.215-201ENST00000364204 112 ntBASIC2.06□□□□□ -2.08
HOXA4Q00056 SNORD50.2-201ENST00000365465 70 ntBASIC2.06□□□□□ -2.08
HOXA4Q00056 MIR597-201ENST00000384968 97 ntBASIC2.06□□□□□ -2.08
HOXA4Q00056 MIR29C-201ENST00000385231 88 ntBASIC2.06□□□□□ -2.08
HOXA4Q00056 RNU11-3P-201ENST00000391111 133 ntBASIC2.06□□□□□ -2.08
HOXA4Q00056 RNU6-257P-201ENST00000410238 98 ntBASIC2.06□□□□□ -2.08
HOXA4Q00056 CYCSP49-201ENST00000420810 319 ntBASIC2.06□□□□□ -2.08
HOXA4Q00056 AC018634.1-201ENST00000437554 401 ntBASIC2.06□□□□□ -2.08
HOXA4Q00056 AL606517.2-201ENST00000442855 241 ntBASIC2.06□□□□□ -2.08
HOXA4Q00056 SNORD11-201ENST00000459124 84 ntBASIC2.06□□□□□ -2.08
HOXA4Q00056 RPS26P45-201ENST00000471748 340 ntBASIC2.06□□□□□ -2.08
HOXA4Q00056 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.06□□□□□ -2.08
HOXA4Q00056 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC2.06□□□□□ -2.08
HOXA4Q00056 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.06□□□□□ -2.08
HOXA4Q00056 Y_RNA.337-201ENST00000365312 102 ntBASIC2.05□□□□□ -2.08
HOXA4Q00056 Y_RNA.568-201ENST00000384742 113 ntBASIC2.05□□□□□ -2.08
HOXA4Q00056 RNU4-43P-201ENST00000410628 137 ntBASIC2.05□□□□□ -2.08
HOXA4Q00056 NDUFA4P2-201ENST00000489989 244 ntBASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms