Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AL359821.1-201ENST00000605519 182 ntBASIC0.78□□□□□ -2.28
PKNOX1P55347 AC092794.1-201ENST00000612734 582 ntBASIC0.78□□□□□ -2.28
PKNOX1P55347 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC0.78□□□□□ -2.28
PKNOX1P55347 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.78□□□□□ -2.28
PKNOX1P55347 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.77□□□□□ -2.29
PKNOX1P55347 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.77□□□□□ -2.29
PKNOX1P55347 MIR1298-201ENST00000408783 112 ntBASIC0.77□□□□□ -2.29
PKNOX1P55347 RNU6ATAC25P-201ENST00000408798 117 ntBASIC0.77□□□□□ -2.29
PKNOX1P55347 Y_RNA.621-201ENST00000411065 96 ntBASIC0.77□□□□□ -2.29
PKNOX1P55347 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.77□□□□□ -2.29
PKNOX1P55347 RNU7-169P-201ENST00000459456 61 ntBASIC0.77□□□□□ -2.29
PKNOX1P55347 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.77□□□□□ -2.29
PKNOX1P55347 RNU6-470P-201ENST00000515954 104 ntBASIC0.77□□□□□ -2.29
PKNOX1P55347 RNU6-1012P-201ENST00000516606 109 ntBASIC0.77□□□□□ -2.29
PKNOX1P55347 RNU7-4P-201ENST00000516961 62 ntBASIC0.77□□□□□ -2.29
PKNOX1P55347 RNU6-264P-201ENST00000517134 104 ntBASIC0.77□□□□□ -2.29
PKNOX1P55347 AC006380.1-201ENST00000603598 186 ntBASIC0.77□□□□□ -2.29
PKNOX1P55347 AC011476.5-201ENST00000615594 130 ntBASIC0.77□□□□□ -2.29
PKNOX1P55347 U6atac.1-201ENST00000616025 117 ntBASIC0.77□□□□□ -2.29
PKNOX1P55347 Y_RNA.253-201ENST00000364562 112 ntBASIC0.76□□□□□ -2.29
PKNOX1P55347 RNU6-20P-201ENST00000384106 107 ntBASIC0.76□□□□□ -2.29
PKNOX1P55347 MIR452-201ENST00000385020 85 ntBASIC0.76□□□□□ -2.29
PKNOX1P55347 RNU2-64P-201ENST00000411315 191 ntBASIC0.76□□□□□ -2.29
PKNOX1P55347 PDCD5P2-201ENST00000507570 312 ntBASIC0.76□□□□□ -2.29
PKNOX1P55347 ACA64.5-201ENST00000516207 127 ntBASIC0.76□□□□□ -2.29
PKNOX1P55347 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.76□□□□□ -2.29
PKNOX1P55347 MIR5690-201ENST00000583739 73 ntBASIC0.76□□□□□ -2.29
PKNOX1P55347 AC005176.2-201ENST00000596933 147 ntBASIC0.76□□□□□ -2.29
PKNOX1P55347 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
PKNOX1P55347 AC106800.4-201ENST00000614905 153 ntBASIC0.76□□□□□ -2.29
PKNOX1P55347 AC138305.3-201ENST00000624988 240 ntBASIC0.76□□□□□ -2.29
PKNOX1P55347 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
PKNOX1P55347 RNU6-626P-201ENST00000363354 107 ntBASIC0.75□□□□□ -2.29
PKNOX1P55347 Y_RNA.446-201ENST00000384178 104 ntBASIC0.75□□□□□ -2.29
PKNOX1P55347 RNU6-1105P-201ENST00000384774 107 ntBASIC0.75□□□□□ -2.29
PKNOX1P55347 SNORD78.2-201ENST00000391076 69 ntBASIC0.75□□□□□ -2.29
PKNOX1P55347 Y_RNA.619-201ENST00000410951 90 ntBASIC0.75□□□□□ -2.29
PKNOX1P55347 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.75□□□□□ -2.29
PKNOX1P55347 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.75□□□□□ -2.29
PKNOX1P55347 RNU6-436P-201ENST00000516171 114 ntBASIC0.75□□□□□ -2.29
PKNOX1P55347 AC144568.1-201ENST00000520139 137 ntBASIC0.75□□□□□ -2.29
PKNOX1P55347 AP003716.2-201ENST00000528260 108 ntBASIC0.75□□□□□ -2.29
PKNOX1P55347 MIR4653-201ENST00000585107 83 ntBASIC0.75□□□□□ -2.29
PKNOX1P55347 AC211469.2-201ENST00000605461 205 ntBASIC0.75□□□□□ -2.29
PKNOX1P55347 MIR6866-201ENST00000638146 69 ntBASIC0.75□□□□□ -2.29
PKNOX1P55347 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.75□□□□□ -2.29
PKNOX1P55347 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
PKNOX1P55347 RNU6-708P-201ENST00000384217 107 ntBASIC0.74□□□□□ -2.29
PKNOX1P55347 MIR522-201ENST00000385071 87 ntBASIC0.74□□□□□ -2.29
PKNOX1P55347 MIR559-201ENST00000385188 96 ntBASIC0.74□□□□□ -2.29
PKNOX1P55347 MIR516B2-201ENST00000385190 85 ntBASIC0.74□□□□□ -2.29
PKNOX1P55347 AC006461.1-201ENST00000412637 326 ntBASIC0.74□□□□□ -2.29
PKNOX1P55347 CHEK2P4-201ENST00000450340 246 ntBASIC0.74□□□□□ -2.29
PKNOX1P55347 RNU7-90P-201ENST00000459216 62 ntBASIC0.74□□□□□ -2.29
PKNOX1P55347 AC005840.1-201ENST00000498412 377 ntBASIC0.74□□□□□ -2.29
PKNOX1P55347 RNU6-155P-201ENST00000516347 100 ntBASIC0.74□□□□□ -2.29
PKNOX1P55347 RNU6-113P-201ENST00000516653 101 ntBASIC0.74□□□□□ -2.29
PKNOX1P55347 RNU6-197P-201ENST00000516680 100 ntBASIC0.74□□□□□ -2.29
PKNOX1P55347 MIR3973-201ENST00000579824 107 ntBASIC0.74□□□□□ -2.29
PKNOX1P55347 MIR4769-201ENST00000584126 77 ntBASIC0.74□□□□□ -2.29
PKNOX1P55347 RNA5SP264-201ENST00000363115 107 ntBASIC0.73□□□□□ -2.29
PKNOX1P55347 Y_RNA.146-201ENST00000363549 102 ntBASIC0.73□□□□□ -2.29
PKNOX1P55347 AC117470.1-201ENST00000381974 330 ntBASIC0.73□□□□□ -2.29
PKNOX1P55347 Y_RNA.505-201ENST00000384489 102 ntBASIC0.73□□□□□ -2.29
PKNOX1P55347 MIR942-201ENST00000401111 86 ntBASIC0.73□□□□□ -2.29
PKNOX1P55347 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.73□□□□□ -2.29
PKNOX1P55347 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.73□□□□□ -2.29
PKNOX1P55347 HMGN1P7-201ENST00000491722 313 ntBASIC0.73□□□□□ -2.29
PKNOX1P55347 AC108729.3-201ENST00000513484 108 ntBASIC0.73□□□□□ -2.29
PKNOX1P55347 RNU6-559P-201ENST00000516151 98 ntBASIC0.73□□□□□ -2.29
PKNOX1P55347 AC090142.3-201ENST00000519012 385 ntBASIC0.73□□□□□ -2.29
PKNOX1P55347 MIR4659A-201ENST00000580269 81 ntBASIC0.73□□□□□ -2.29
PKNOX1P55347 MIR4781-201ENST00000585250 76 ntBASIC0.73□□□□□ -2.29
PKNOX1P55347 AC113139.1-201ENST00000605049 239 ntBASIC0.73□□□□□ -2.29
PKNOX1P55347 U2.1-201ENST00000618978 145 ntBASIC0.73□□□□□ -2.29
PKNOX1P55347 RNU6-324P-201ENST00000363957 106 ntBASIC0.72□□□□□ -2.29
PKNOX1P55347 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.72□□□□□ -2.29
PKNOX1P55347 Y_RNA.605-201ENST00000410577 105 ntBASIC0.72□□□□□ -2.29
PKNOX1P55347 AL606490.4-201ENST00000423117 127 ntBASIC0.72□□□□□ -2.29
PKNOX1P55347 RPS20P10-201ENST00000451209 253 ntBASIC0.72□□□□□ -2.29
PKNOX1P55347 Y_RNA.653-201ENST00000459091 95 ntBASIC0.72□□□□□ -2.29
PKNOX1P55347 PRDX4P1-201ENST00000507189 574 ntBASIC0.72□□□□□ -2.29
PKNOX1P55347 RNU7-41P-201ENST00000515917 61 ntBASIC0.72□□□□□ -2.29
PKNOX1P55347 RNA5SP255-201ENST00000516370 107 ntBASIC0.72□□□□□ -2.29
PKNOX1P55347 SNORA74.3-201ENST00000517108 154 ntBASIC0.72□□□□□ -2.29
PKNOX1P55347 AC022616.4-201ENST00000522985 181 ntBASIC0.72□□□□□ -2.29
PKNOX1P55347 AC108706.1-201ENST00000611053 297 ntBASIC0.72□□□□□ -2.29
PKNOX1P55347 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.72□□□□□ -2.29
PKNOX1P55347 U6.92-201ENST00000636464 89 ntBASIC0.72□□□□□ -2.29
PKNOX1P55347 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
PKNOX1P55347 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.72□□□□□ -2.29
PKNOX1P55347 AL442644.1-201ENST00000454390 3105 ntBASIC0.71□□□□□ -2.3
PKNOX1P55347 SNORA25.3-201ENST00000363205 127 ntBASIC0.71□□□□□ -2.3
PKNOX1P55347 Y_RNA.314-201ENST00000365114 102 ntBASIC0.71□□□□□ -2.3
PKNOX1P55347 MIR605-201ENST00000385078 83 ntBASIC0.71□□□□□ -2.3
PKNOX1P55347 MIR100-201ENST00000385259 80 ntBASIC0.71□□□□□ -2.3
PKNOX1P55347 MIR1185-1-201ENST00000408598 86 ntBASIC0.71□□□□□ -2.3
PKNOX1P55347 RPS3AP1-201ENST00000413190 320 ntBASIC0.71□□□□□ -2.3
PKNOX1P55347 AC096644.2-201ENST00000429278 159 ntBASIC0.71□□□□□ -2.3
PKNOX1P55347 RNU6-911P-201ENST00000516523 104 ntBASIC0.71□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms