Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RNU6-376P-201ENST00000384731 106 ntBASIC0.83□□□□□ -2.28
MSH6P52701 MIR873-201ENST00000401120 77 ntBASIC0.83□□□□□ -2.28
MSH6P52701 AL353997.1-201ENST00000432936 108 ntBASIC0.83□□□□□ -2.28
MSH6P52701 MTND5P15-201ENST00000434246 349 ntBASIC0.83□□□□□ -2.28
MSH6P52701 MTND3P10-201ENST00000450967 341 ntBASIC0.83□□□□□ -2.28
MSH6P52701 AC107399.1-201ENST00000451226 265 ntBASIC0.83□□□□□ -2.28
MSH6P52701 AC093850.1-201ENST00000454121 251 ntBASIC0.83□□□□□ -2.28
MSH6P52701 AL049830.1-201ENST00000468034 425 ntBASIC0.83□□□□□ -2.28
MSH6P52701 RNU6-358P-201ENST00000516564 75 ntBASIC0.83□□□□□ -2.28
MSH6P52701 AC022868.1-201ENST00000517767 391 ntBASIC0.83□□□□□ -2.28
MSH6P52701 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.83□□□□□ -2.28
MSH6P52701 AC080078.2-201ENST00000603766 501 ntBASIC0.83□□□□□ -2.28
MSH6P52701 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.83□□□□□ -2.28
MSH6P52701 Y_RNA.88-201ENST00000363029 99 ntBASIC0.83□□□□□ -2.28
MSH6P52701 Y_RNA.363-201ENST00000365529 113 ntBASIC0.83□□□□□ -2.28
MSH6P52701 AL451046.2-201ENST00000403074 277 ntBASIC0.83□□□□□ -2.28
MSH6P52701 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC0.83□□□□□ -2.28
MSH6P52701 SUMO1P2-201ENST00000452524 304 ntBASIC0.83□□□□□ -2.28
MSH6P52701 RNU6-625P-201ENST00000459412 107 ntBASIC0.83□□□□□ -2.28
MSH6P52701 RPL17P19-201ENST00000489069 552 ntBASIC0.83□□□□□ -2.28
MSH6P52701 SNORA40.9-201ENST00000515895 93 ntBASIC0.83□□□□□ -2.28
MSH6P52701 RNU6-322P-201ENST00000516010 103 ntBASIC0.83□□□□□ -2.28
MSH6P52701 RNU6-1278P-201ENST00000516130 107 ntBASIC0.83□□□□□ -2.28
MSH6P52701 RNU6-1291P-201ENST00000516591 104 ntBASIC0.83□□□□□ -2.28
MSH6P52701 AC092794.2-201ENST00000620933 563 ntBASIC0.83□□□□□ -2.28
MSH6P52701 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.82□□□□□ -2.28
MSH6P52701 RNU6-1301P-201ENST00000362724 104 ntBASIC0.82□□□□□ -2.28
MSH6P52701 RNU6-1310P-201ENST00000384153 107 ntBASIC0.82□□□□□ -2.28
MSH6P52701 MIR520G-201ENST00000385064 90 ntBASIC0.82□□□□□ -2.28
MSH6P52701 SNORD12-201ENST00000391002 90 ntBASIC0.82□□□□□ -2.28
MSH6P52701 AC002429.1-201ENST00000437672 148 ntBASIC0.82□□□□□ -2.28
MSH6P52701 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC0.82□□□□□ -2.28
MSH6P52701 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC0.82□□□□□ -2.28
MSH6P52701 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.82□□□□□ -2.28
MSH6P52701 SNORD79.1-201ENST00000516069 84 ntBASIC0.82□□□□□ -2.28
MSH6P52701 RNU6-947P-201ENST00000516264 106 ntBASIC0.82□□□□□ -2.28
MSH6P52701 MIR2355-201ENST00000517199 87 ntBASIC0.82□□□□□ -2.28
MSH6P52701 AL117336.2-201ENST00000602435 335 ntBASIC0.82□□□□□ -2.28
MSH6P52701 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
MSH6P52701 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.81□□□□□ -2.28
MSH6P52701 Y_RNA.72-201ENST00000362894 103 ntBASIC0.81□□□□□ -2.28
MSH6P52701 Y_RNA.361-201ENST00000365515 120 ntBASIC0.81□□□□□ -2.28
MSH6P52701 RNU6-136P-201ENST00000384663 107 ntBASIC0.81□□□□□ -2.28
MSH6P52701 SNORA75.4-201ENST00000391278 119 ntBASIC0.81□□□□□ -2.28
MSH6P52701 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.81□□□□□ -2.28
MSH6P52701 AC092423.1-201ENST00000430165 186 ntBASIC0.81□□□□□ -2.28
MSH6P52701 RPS26P48-201ENST00000491713 339 ntBASIC0.81□□□□□ -2.28
MSH6P52701 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.81□□□□□ -2.28
MSH6P52701 SCARNA16.2-201ENST00000516520 172 ntBASIC0.81□□□□□ -2.28
MSH6P52701 AC060780.3-201ENST00000589464 80 ntBASIC0.81□□□□□ -2.28
MSH6P52701 AL357312.1-201ENST00000603879 298 ntBASIC0.81□□□□□ -2.28
MSH6P52701 PRELID3BP2-201ENST00000605362 201 ntBASIC0.81□□□□□ -2.28
MSH6P52701 AC243829.6-201ENST00000612652 106 ntBASIC0.81□□□□□ -2.28
MSH6P52701 PISRT1.1-201ENST00000616930 107 ntBASIC0.81□□□□□ -2.28
MSH6P52701 Y_RNA.124-201ENST00000363339 93 ntBASIC0.8□□□□□ -2.28
MSH6P52701 RNU6-833P-201ENST00000363486 107 ntBASIC0.8□□□□□ -2.28
MSH6P52701 Y_RNA.274-201ENST00000364714 101 ntBASIC0.8□□□□□ -2.28
MSH6P52701 VTRNA1-3-201ENST00000365645 89 ntBASIC0.8□□□□□ -2.28
MSH6P52701 AC233266.1-201ENST00000454518 96 ntBASIC0.8□□□□□ -2.28
MSH6P52701 RNU7-30P-201ENST00000516835 62 ntBASIC0.8□□□□□ -2.28
MSH6P52701 RNU6-1096P-201ENST00000517089 102 ntBASIC0.8□□□□□ -2.28
MSH6P52701 AP003484.1-201ENST00000530974 250 ntBASIC0.8□□□□□ -2.28
MSH6P52701 AC242852.1-201ENST00000612151 96 ntBASIC0.8□□□□□ -2.28
MSH6P52701 AC244015.1-201ENST00000622301 99 ntBASIC0.8□□□□□ -2.28
MSH6P52701 RNU6-99P-201ENST00000364721 107 ntBASIC0.79□□□□□ -2.28
MSH6P52701 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC0.79□□□□□ -2.28
MSH6P52701 SNORD12B-201ENST00000410433 91 ntBASIC0.79□□□□□ -2.28
MSH6P52701 FCF1P9-201ENST00000412546 282 ntBASIC0.79□□□□□ -2.28
MSH6P52701 AC114482.1-201ENST00000418010 247 ntBASIC0.79□□□□□ -2.28
MSH6P52701 AC063976.4-201ENST00000421971 163 ntBASIC0.79□□□□□ -2.28
MSH6P52701 HSPE1P13-201ENST00000451143 297 ntBASIC0.79□□□□□ -2.28
MSH6P52701 FGF7P6-202ENST00000451282 293 ntBASIC0.79□□□□□ -2.28
MSH6P52701 RNU6-307P-201ENST00000516743 106 ntBASIC0.79□□□□□ -2.28
MSH6P52701 MIR4661-201ENST00000582720 75 ntBASIC0.79□□□□□ -2.28
MSH6P52701 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.79□□□□□ -2.28
MSH6P52701 MIR1244-1-201ENST00000612829 85 ntBASIC0.79□□□□□ -2.28
MSH6P52701 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC0.79□□□□□ -2.28
MSH6P52701 MIR1244-3-201ENST00000635744 85 ntBASIC0.79□□□□□ -2.28
MSH6P52701 MIR1244-2-201ENST00000636449 85 ntBASIC0.79□□□□□ -2.28
MSH6P52701 MIR1244-4-202ENST00000636813 85 ntBASIC0.79□□□□□ -2.28
MSH6P52701 RNU1-36P-201ENST00000365130 165 ntBASIC0.78□□□□□ -2.28
MSH6P52701 Y_RNA.412-201ENST00000384001 104 ntBASIC0.78□□□□□ -2.28
MSH6P52701 SNORA80D-201ENST00000384488 135 ntBASIC0.78□□□□□ -2.28
MSH6P52701 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.78□□□□□ -2.28
MSH6P52701 RPL39P39-201ENST00000455840 151 ntBASIC0.78□□□□□ -2.28
MSH6P52701 MIR2053-201ENST00000459295 91 ntBASIC0.78□□□□□ -2.28
MSH6P52701 RNU6-63P-201ENST00000516690 95 ntBASIC0.78□□□□□ -2.28
MSH6P52701 RNU2-12P-201ENST00000517216 168 ntBASIC0.78□□□□□ -2.28
MSH6P52701 RNU6-1116P-201ENST00000517269 99 ntBASIC0.78□□□□□ -2.28
MSH6P52701 AC004467.1-201ENST00000615678 330 ntBASIC0.78□□□□□ -2.28
MSH6P52701 AC027279.3-201ENST00000625055 122 ntBASIC0.78□□□□□ -2.28
MSH6P52701 MIR526A1-201ENST00000384897 85 ntBASIC0.77□□□□□ -2.29
MSH6P52701 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC0.77□□□□□ -2.29
MSH6P52701 MIR891A-201ENST00000401237 79 ntBASIC0.77□□□□□ -2.29
MSH6P52701 RPL23AP50-201ENST00000434149 455 ntBASIC0.77□□□□□ -2.29
MSH6P52701 AC104332.1-201ENST00000440471 797 ntBASIC0.77□□□□□ -2.29
MSH6P52701 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.77□□□□□ -2.29
MSH6P52701 LINC01399-202ENST00000458450 244 ntBASIC0.77□□□□□ -2.29
MSH6P52701 HMGN1P10-201ENST00000474557 553 ntBASIC0.77□□□□□ -2.29
MSH6P52701 RNU6-408P-201ENST00000515910 100 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms