Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 USP9YP16-201ENST00000430287 407 ntBASIC0.33□□□□□ -2.36
COL18A1P39060 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.33□□□□□ -2.36
COL18A1P39060 USP9YP23-201ENST00000455085 407 ntBASIC0.33□□□□□ -2.36
COL18A1P39060 Y_RNA.665-201ENST00000516177 98 ntBASIC0.33□□□□□ -2.36
COL18A1P39060 RNU6-1116P-201ENST00000517269 99 ntBASIC0.33□□□□□ -2.36
COL18A1P39060 MIR410-201ENST00000362222 80 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 RNU6-1084P-201ENST00000362498 107 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 SNORD68-201ENST00000363214 84 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 Y_RNA.212-201ENST00000364177 102 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 RNU6-1264P-201ENST00000383891 107 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 UQCRBP2-201ENST00000447827 297 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC0.32□□□□□ -2.36
COL18A1P39060 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC0.32□□□□□ -2.36
COL18A1P39060 AP003716.2-201ENST00000528260 108 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 AC120024.3-201ENST00000603167 156 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 7SK.10-201ENST00000621414 298 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 AC134026.1-201ENST00000623249 2239 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.32□□□□□ -2.36
COL18A1P39060 MIR103A2-201ENST00000362154 78 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 Y_RNA.48-201ENST00000362710 103 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
COL18A1P39060 SNORD116-9-201ENST00000384000 95 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 Y_RNA.414-201ENST00000384011 101 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 SNORD116-3-201ENST00000384287 95 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 SNORD116-7-201ENST00000384404 95 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 SNORD116-5-201ENST00000384462 95 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 PIGPP3-201ENST00000425307 415 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 AC067940.1-201ENST00000458411 300 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 AC019235.1-201ENST00000503847 207 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.32□□□□□ -2.36
COL18A1P39060 AC010486.3-201ENST00000511602 785 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 AC023827.1-201ENST00000569247 97 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 MIR4305-201ENST00000583252 102 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 MIR3611-201ENST00000584484 83 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.32□□□□□ -2.36
COL18A1P39060 MTND5P16-201ENST00000460269 1703 ntBASIC0.31□□□□□ -2.36
COL18A1P39060 Y_RNA.106-201ENST00000363189 100 ntBASIC0.31□□□□□ -2.36
COL18A1P39060 Y_RNA.135-201ENST00000363439 95 ntBASIC0.31□□□□□ -2.36
COL18A1P39060 SNORD113.3-201ENST00000364630 78 ntBASIC0.31□□□□□ -2.36
COL18A1P39060 RNU6-1237P-201ENST00000384777 107 ntBASIC0.31□□□□□ -2.36
COL18A1P39060 RNU6-700P-201ENST00000391043 107 ntBASIC0.31□□□□□ -2.36
COL18A1P39060 RNU6-373P-201ENST00000411247 98 ntBASIC0.31□□□□□ -2.36
COL18A1P39060 MTCYBP10-201ENST00000424905 650 ntBASIC0.31□□□□□ -2.36
COL18A1P39060 EIF1P2-201ENST00000428233 350 ntBASIC0.31□□□□□ -2.36
COL18A1P39060 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC0.31□□□□□ -2.36
COL18A1P39060 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC0.31□□□□□ -2.36
COL18A1P39060 AC114811.1-201ENST00000507207 168 ntBASIC0.31□□□□□ -2.36
COL18A1P39060 RNU6-1096P-201ENST00000517089 102 ntBASIC0.31□□□□□ -2.36
COL18A1P39060 SNORA74.3-201ENST00000517108 154 ntBASIC0.31□□□□□ -2.36
COL18A1P39060 IGLVI-20-201ENST00000519296 130 ntBASIC0.31□□□□□ -2.36
COL18A1P39060 MIR4723-201ENST00000585070 81 ntBASIC0.31□□□□□ -2.36
COL18A1P39060 Y_RNA.256-201ENST00000364594 104 ntBASIC0.3□□□□□ -2.36
COL18A1P39060 RNU6-117P-201ENST00000365415 107 ntBASIC0.3□□□□□ -2.36
COL18A1P39060 RNU6-1013P-201ENST00000384180 107 ntBASIC0.3□□□□□ -2.36
COL18A1P39060 MIR1185-1-201ENST00000408598 86 ntBASIC0.3□□□□□ -2.36
COL18A1P39060 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.3□□□□□ -2.36
COL18A1P39060 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.3□□□□□ -2.36
COL18A1P39060 RNU7-43P-201ENST00000516554 64 ntBASIC0.3□□□□□ -2.36
COL18A1P39060 Y_RNA.688-201ENST00000516565 95 ntBASIC0.3□□□□□ -2.36
COL18A1P39060 RNU1-54P-201ENST00000517181 120 ntBASIC0.3□□□□□ -2.36
COL18A1P39060 AC018448.1-201ENST00000552843 316 ntBASIC0.3□□□□□ -2.36
COL18A1P39060 MIR1321-201ENST00000637766 79 ntBASIC0.3□□□□□ -2.36
COL18A1P39060 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.3□□□□□ -2.36
COL18A1P39060 AC117470.1-201ENST00000381974 330 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 Y_RNA.488-201ENST00000384403 102 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 MIR873-201ENST00000401120 77 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 RNU6-908P-201ENST00000410160 94 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC0.29□□□□□ -2.36
COL18A1P39060 MIR4764-201ENST00000580680 88 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 MIR4762-201ENST00000585261 75 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 AC104695.3-201ENST00000604052 296 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 AC005828.6-201ENST00000606610 232 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 AC245008.1-201ENST00000608123 476 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 AC104260.1-201ENST00000616660 539 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC0.29□□□□□ -2.36
COL18A1P39060 SNORA25.3-201ENST00000363205 127 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 RNY3P3-201ENST00000363816 102 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 Y_RNA.243-201ENST00000364481 109 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 RNU6-1335P-201ENST00000365426 107 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 Y_RNA.364-201ENST00000365532 101 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 Y_RNA.571-201ENST00000384753 98 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 MIR190B-201ENST00000401119 79 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC0.29□□□□□ -2.36
COL18A1P39060 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC0.29□□□□□ -2.36
COL18A1P39060 MTND1P1-201ENST00000445453 368 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 SNORD5.1-201ENST00000458800 75 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 RNU7-66P-201ENST00000459469 62 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 Y_RNA.714-201ENST00000517065 90 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 MTND4LP26-201ENST00000518144 282 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 AL008636.1-201ENST00000625038 1018 ntBASIC0.29□□□□□ -2.36
COL18A1P39060 RNU4-73P-201ENST00000363164 141 ntBASIC0.28□□□□□ -2.36
COL18A1P39060 AL354751.2-201ENST00000415471 210 ntBASIC0.28□□□□□ -2.36
COL18A1P39060 AC244098.3-201ENST00000424803 96 ntBASIC0.28□□□□□ -2.36
COL18A1P39060 U8.19-201ENST00000459095 133 ntBASIC0.28□□□□□ -2.36
COL18A1P39060 U8.22-201ENST00000459141 133 ntBASIC0.28□□□□□ -2.36
COL18A1P39060 AF235103.2-201ENST00000525753 346 ntBASIC0.28□□□□□ -2.36
COL18A1P39060 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.28□□□□□ -2.36
COL18A1P39060 AC011195.1-201ENST00000578177 177 ntBASIC0.28□□□□□ -2.36
COL18A1P39060 MIR3674-201ENST00000636576 68 ntBASIC0.28□□□□□ -2.36
COL18A1P39060 MIR1-1-201ENST00000362147 71 ntBASIC0.27□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms