Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 AC006157.1-201ENST00000611750 366 ntBASIC1.42□□□□□ -2.18
HOXD13P35453 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
HOXD13P35453 RNU4-41P-201ENST00000364426 143 ntBASIC1.41□□□□□ -2.18
HOXD13P35453 MIR653-201ENST00000385279 96 ntBASIC1.41□□□□□ -2.18
HOXD13P35453 MIR891A-201ENST00000401237 79 ntBASIC1.41□□□□□ -2.18
HOXD13P35453 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.41□□□□□ -2.18
HOXD13P35453 CYCTP-201ENST00000504253 315 ntBASIC1.41□□□□□ -2.18
HOXD13P35453 AC011604.1-201ENST00000545978 196 ntBASIC1.41□□□□□ -2.18
HOXD13P35453 AL357312.1-201ENST00000603879 298 ntBASIC1.41□□□□□ -2.18
HOXD13P35453 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.41□□□□□ -2.18
HOXD13P35453 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.41□□□□□ -2.18
HOXD13P35453 SNORD68-201ENST00000363214 84 ntBASIC1.4□□□□□ -2.19
HOXD13P35453 Y_RNA.140-201ENST00000363474 103 ntBASIC1.4□□□□□ -2.19
HOXD13P35453 Y_RNA.329-201ENST00000365209 107 ntBASIC1.4□□□□□ -2.19
HOXD13P35453 SNORD14.1-201ENST00000365609 90 ntBASIC1.4□□□□□ -2.19
HOXD13P35453 RNU6-163P-201ENST00000384396 106 ntBASIC1.4□□□□□ -2.19
HOXD13P35453 SNORA40.6-201ENST00000391153 128 ntBASIC1.4□□□□□ -2.19
HOXD13P35453 RNU6-955P-201ENST00000410497 104 ntBASIC1.4□□□□□ -2.19
HOXD13P35453 RPEP5-201ENST00000441137 268 ntBASIC1.4□□□□□ -2.19
HOXD13P35453 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.4□□□□□ -2.19
HOXD13P35453 RNU7-110P-201ENST00000516891 62 ntBASIC1.4□□□□□ -2.19
HOXD13P35453 MIR4423-201ENST00000580922 80 ntBASIC1.4□□□□□ -2.19
HOXD13P35453 AC027279.3-201ENST00000625055 122 ntBASIC1.4□□□□□ -2.19
HOXD13P35453 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
HOXD13P35453 Y_RNA.112-201ENST00000363250 102 ntBASIC1.39□□□□□ -2.19
HOXD13P35453 RNU6-833P-201ENST00000363486 107 ntBASIC1.39□□□□□ -2.19
HOXD13P35453 SNORA7.1-201ENST00000363750 139 ntBASIC1.39□□□□□ -2.19
HOXD13P35453 Y_RNA.331-201ENST00000365267 102 ntBASIC1.39□□□□□ -2.19
HOXD13P35453 Y_RNA.458-201ENST00000384240 102 ntBASIC1.39□□□□□ -2.19
HOXD13P35453 AL603825.1-201ENST00000438481 80 ntBASIC1.39□□□□□ -2.19
HOXD13P35453 Z98949.2-201ENST00000440996 144 ntBASIC1.39□□□□□ -2.19
HOXD13P35453 Y_RNA.714-201ENST00000517065 90 ntBASIC1.39□□□□□ -2.19
HOXD13P35453 AC019288.1-201ENST00000557918 224 ntBASIC1.39□□□□□ -2.19
HOXD13P35453 AC120024.3-201ENST00000603167 156 ntBASIC1.39□□□□□ -2.19
HOXD13P35453 AL080274.1-201ENST00000605565 220 ntBASIC1.39□□□□□ -2.19
HOXD13P35453 RNU6-1080P-201ENST00000383982 107 ntBASIC1.38□□□□□ -2.19
HOXD13P35453 Y_RNA.424-201ENST00000384063 103 ntBASIC1.38□□□□□ -2.19
HOXD13P35453 SNORD63-201ENST00000384262 68 ntBASIC1.38□□□□□ -2.19
HOXD13P35453 SNORD116-13-201ENST00000384408 92 ntBASIC1.38□□□□□ -2.19
HOXD13P35453 RNY1P14-201ENST00000384426 108 ntBASIC1.38□□□□□ -2.19
HOXD13P35453 RNU6-21P-201ENST00000384710 107 ntBASIC1.38□□□□□ -2.19
HOXD13P35453 MIR150-201ENST00000385048 84 ntBASIC1.38□□□□□ -2.19
HOXD13P35453 RNU6-855P-201ENST00000410395 104 ntBASIC1.38□□□□□ -2.19
HOXD13P35453 AC093850.1-201ENST00000454121 251 ntBASIC1.38□□□□□ -2.19
HOXD13P35453 RPL39P39-201ENST00000455840 151 ntBASIC1.38□□□□□ -2.19
HOXD13P35453 RNU1-92P-201ENST00000517017 135 ntBASIC1.38□□□□□ -2.19
HOXD13P35453 AC090821.2-201ENST00000523552 176 ntBASIC1.38□□□□□ -2.19
HOXD13P35453 AL160236.1-201ENST00000556317 195 ntBASIC1.38□□□□□ -2.19
HOXD13P35453 SNORD58B-201ENST00000607313 66 ntBASIC1.38□□□□□ -2.19
HOXD13P35453 AC004832.4-201ENST00000608952 331 ntBASIC1.38□□□□□ -2.19
HOXD13P35453 AC068647.2-201ENST00000637380 353 ntBASIC1.38□□□□□ -2.19
HOXD13P35453 MIRLET7C-201ENST00000362160 84 ntBASIC1.37□□□□□ -2.19
HOXD13P35453 MIR378A-201ENST00000362177 66 ntBASIC1.37□□□□□ -2.19
HOXD13P35453 SNORA72-201ENST00000384339 132 ntBASIC1.37□□□□□ -2.19
HOXD13P35453 RNU7-116P-201ENST00000516940 62 ntBASIC1.37□□□□□ -2.19
HOXD13P35453 AC040926.1-201ENST00000530195 238 ntBASIC1.37□□□□□ -2.19
HOXD13P35453 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.37□□□□□ -2.19
HOXD13P35453 RNA5SP327-201ENST00000362494 101 ntBASIC1.36□□□□□ -2.19
HOXD13P35453 Y_RNA.341-201ENST00000365341 102 ntBASIC1.36□□□□□ -2.19
HOXD13P35453 Y_RNA.471-201ENST00000384312 102 ntBASIC1.36□□□□□ -2.19
HOXD13P35453 MIR1302-11-201ENST00000408051 138 ntBASIC1.36□□□□□ -2.19
HOXD13P35453 MIR1302-9-201ENST00000408365 138 ntBASIC1.36□□□□□ -2.19
HOXD13P35453 MIR1302-10-201ENST00000408734 138 ntBASIC1.36□□□□□ -2.19
HOXD13P35453 RPS20P10-201ENST00000451209 253 ntBASIC1.36□□□□□ -2.19
HOXD13P35453 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
HOXD13P35453 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.36□□□□□ -2.19
HOXD13P35453 AL117336.2-201ENST00000602435 335 ntBASIC1.36□□□□□ -2.19
HOXD13P35453 MIR1302-2-201ENST00000607096 138 ntBASIC1.36□□□□□ -2.19
HOXD13P35453 AL591926.4-201ENST00000616895 298 ntBASIC1.36□□□□□ -2.19
HOXD13P35453 AC090971.5-201ENST00000621102 293 ntBASIC1.36□□□□□ -2.19
HOXD13P35453 U8.5-201ENST00000364528 136 ntBASIC1.35□□□□□ -2.19
HOXD13P35453 Y_RNA.395-201ENST00000383945 109 ntBASIC1.35□□□□□ -2.19
HOXD13P35453 Y_RNA.456-201ENST00000384232 111 ntBASIC1.35□□□□□ -2.19
HOXD13P35453 RNU6-939P-201ENST00000384634 107 ntBASIC1.35□□□□□ -2.19
HOXD13P35453 Y_RNA.551-201ENST00000384661 102 ntBASIC1.35□□□□□ -2.19
HOXD13P35453 MIR452-201ENST00000385020 85 ntBASIC1.35□□□□□ -2.19
HOXD13P35453 MTND1P14-201ENST00000427400 950 ntBASIC1.35□□□□□ -2.19
HOXD13P35453 DYNLT3P2-201ENST00000442517 295 ntBASIC1.35□□□□□ -2.19
HOXD13P35453 SNORA31.4-201ENST00000516049 129 ntBASIC1.35□□□□□ -2.19
HOXD13P35453 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.35□□□□□ -2.19
HOXD13P35453 uc_338.22-201ENST00000622722 187 ntBASIC1.35□□□□□ -2.19
HOXD13P35453 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.34□□□□□ -2.19
HOXD13P35453 Y_RNA.80-201ENST00000362996 102 ntBASIC1.34□□□□□ -2.19
HOXD13P35453 Y_RNA.485-201ENST00000384395 102 ntBASIC1.34□□□□□ -2.19
HOXD13P35453 MIR618-201ENST00000385287 98 ntBASIC1.34□□□□□ -2.19
HOXD13P35453 RNU6-1248P-201ENST00000391096 64 ntBASIC1.34□□□□□ -2.19
HOXD13P35453 AC104332.1-201ENST00000440471 797 ntBASIC1.34□□□□□ -2.19
HOXD13P35453 AC009474.2-201ENST00000451383 136 ntBASIC1.34□□□□□ -2.19
HOXD13P35453 SNORA25.10-201ENST00000515926 124 ntBASIC1.34□□□□□ -2.19
HOXD13P35453 RNU6-947P-201ENST00000516264 106 ntBASIC1.34□□□□□ -2.19
HOXD13P35453 RNU6-917P-201ENST00000516294 104 ntBASIC1.34□□□□□ -2.19
HOXD13P35453 RNU7-40P-201ENST00000516397 64 ntBASIC1.34□□□□□ -2.19
HOXD13P35453 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.34□□□□□ -2.19
HOXD13P35453 AC008269.2-201ENST00000561915 1105 ntBASIC1.34□□□□□ -2.19
HOXD13P35453 MIR4762-201ENST00000585261 75 ntBASIC1.34□□□□□ -2.19
HOXD13P35453 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.34□□□□□ -2.19
HOXD13P35453 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.34□□□□□ -2.2
HOXD13P35453 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
HOXD13P35453 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
HOXD13P35453 RNU6-1084P-201ENST00000362498 107 ntBASIC1.33□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 123.4 ms