Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.36□□□□□ -2.03
SMARCA1P28370 AC068647.2-201ENST00000637380 353 ntBASIC2.36□□□□□ -2.03
SMARCA1P28370 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.36□□□□□ -2.03
SMARCA1P28370 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
SMARCA1P28370 AC008555.8-201ENST00000623602 2168 ntBASIC2.35□□□□□ -2.03
SMARCA1P28370 SNORD114-1-201ENST00000362705 72 ntBASIC2.35□□□□□ -2.03
SMARCA1P28370 AL356379.1-201ENST00000414105 126 ntBASIC2.35□□□□□ -2.03
SMARCA1P28370 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
SMARCA1P28370 AC025033.1-201ENST00000463883 194 ntBASIC2.35□□□□□ -2.03
SMARCA1P28370 RPL36AP21-201ENST00000490372 323 ntBASIC2.35□□□□□ -2.03
SMARCA1P28370 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC2.35□□□□□ -2.03
SMARCA1P28370 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.35□□□□□ -2.03
SMARCA1P28370 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.35□□□□□ -2.03
SMARCA1P28370 RNU7-99P-201ENST00000516271 62 ntBASIC2.35□□□□□ -2.03
SMARCA1P28370 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.35□□□□□ -2.03
SMARCA1P28370 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
SMARCA1P28370 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
SMARCA1P28370 Y_RNA.274-201ENST00000364714 101 ntBASIC2.34□□□□□ -2.03
SMARCA1P28370 RNA5SP37-201ENST00000365420 130 ntBASIC2.34□□□□□ -2.03
SMARCA1P28370 RNU4-52P-201ENST00000384209 138 ntBASIC2.34□□□□□ -2.03
SMARCA1P28370 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
SMARCA1P28370 MIR1298-201ENST00000408783 112 ntBASIC2.34□□□□□ -2.03
SMARCA1P28370 Y_RNA.626-201ENST00000411288 95 ntBASIC2.34□□□□□ -2.03
SMARCA1P28370 CST2P1-201ENST00000425770 87 ntBASIC2.34□□□□□ -2.03
SMARCA1P28370 AL162725.1-201ENST00000435405 301 ntBASIC2.34□□□□□ -2.03
SMARCA1P28370 HSPE1P21-201ENST00000438283 308 ntBASIC2.34□□□□□ -2.03
SMARCA1P28370 AC117454.1-201ENST00000491120 168 ntBASIC2.34□□□□□ -2.03
SMARCA1P28370 AC005786.1-201ENST00000588553 154 ntBASIC2.34□□□□□ -2.03
SMARCA1P28370 AC005972.2-201ENST00000604690 348 ntBASIC2.34□□□□□ -2.03
SMARCA1P28370 AL359075.3-201ENST00000613288 217 ntBASIC2.34□□□□□ -2.03
SMARCA1P28370 AC013791.1-201ENST00000616619 62 ntBASIC2.34□□□□□ -2.03
SMARCA1P28370 U1.36-201ENST00000620684 176 ntBASIC2.34□□□□□ -2.03
SMARCA1P28370 ZNF702P-202ENST00000434269 1966 ntBASIC2.33□□□□□ -2.04
SMARCA1P28370 RNU6-899P-201ENST00000363947 107 ntBASIC2.33□□□□□ -2.04
SMARCA1P28370 Y_RNA.200-201ENST00000364018 102 ntBASIC2.33□□□□□ -2.04
SMARCA1P28370 RNU6-200P-201ENST00000364743 107 ntBASIC2.33□□□□□ -2.04
SMARCA1P28370 RNU6-1323P-201ENST00000384025 107 ntBASIC2.33□□□□□ -2.04
SMARCA1P28370 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.33□□□□□ -2.04
SMARCA1P28370 RNU6-138P-201ENST00000515952 107 ntBASIC2.33□□□□□ -2.04
SMARCA1P28370 RNU6-1278P-201ENST00000516130 107 ntBASIC2.33□□□□□ -2.04
SMARCA1P28370 RNU7-115P-201ENST00000516433 55 ntBASIC2.33□□□□□ -2.04
SMARCA1P28370 MIR5692C2-201ENST00000577959 77 ntBASIC2.33□□□□□ -2.04
SMARCA1P28370 AC073413.2-201ENST00000604332 360 ntBASIC2.33□□□□□ -2.04
SMARCA1P28370 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.32□□□□□ -2.04
SMARCA1P28370 Y_RNA.199-201ENST00000364014 102 ntBASIC2.32□□□□□ -2.04
SMARCA1P28370 Y_RNA.304-201ENST00000365011 112 ntBASIC2.32□□□□□ -2.04
SMARCA1P28370 RNU6-376P-201ENST00000384731 106 ntBASIC2.32□□□□□ -2.04
SMARCA1P28370 AL512604.1-201ENST00000404812 257 ntBASIC2.32□□□□□ -2.04
SMARCA1P28370 AL163195.1-201ENST00000496941 348 ntBASIC2.32□□□□□ -2.04
SMARCA1P28370 RNVU1-2-201ENST00000516326 135 ntBASIC2.32□□□□□ -2.04
SMARCA1P28370 RNU1-142P-201ENST00000516682 145 ntBASIC2.32□□□□□ -2.04
SMARCA1P28370 AC024405.2-202ENST00000532731 184 ntBASIC2.32□□□□□ -2.04
SMARCA1P28370 MIR5089-201ENST00000580047 84 ntBASIC2.32□□□□□ -2.04
SMARCA1P28370 MIR3668-201ENST00000582138 75 ntBASIC2.32□□□□□ -2.04
SMARCA1P28370 MIR4448-201ENST00000584360 86 ntBASIC2.32□□□□□ -2.04
SMARCA1P28370 AP003357.1-201ENST00000604497 148 ntBASIC2.32□□□□□ -2.04
SMARCA1P28370 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC2.32□□□□□ -2.04
SMARCA1P28370 AL365265.1-201ENST00000621045 234 ntBASIC2.32□□□□□ -2.04
SMARCA1P28370 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
SMARCA1P28370 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.32□□□□□ -2.04
SMARCA1P28370 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
SMARCA1P28370 Y_RNA.83-201ENST00000363005 113 ntBASIC2.31□□□□□ -2.04
SMARCA1P28370 SNORA8-201ENST00000384574 139 ntBASIC2.31□□□□□ -2.04
SMARCA1P28370 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.31□□□□□ -2.04
SMARCA1P28370 AC010154.1-201ENST00000425857 269 ntBASIC2.31□□□□□ -2.04
SMARCA1P28370 RPS4XP11-201ENST00000446897 772 ntBASIC2.31□□□□□ -2.04
SMARCA1P28370 COX6CP14-201ENST00000469580 174 ntBASIC2.31□□□□□ -2.04
SMARCA1P28370 RNY3P16-201ENST00000516338 101 ntBASIC2.31□□□□□ -2.04
SMARCA1P28370 RNU1-40P-201ENST00000516816 164 ntBASIC2.31□□□□□ -2.04
SMARCA1P28370 RNU1-97P-201ENST00000516872 164 ntBASIC2.31□□□□□ -2.04
SMARCA1P28370 POLR3GP1-201ENST00000594073 261 ntBASIC2.31□□□□□ -2.04
SMARCA1P28370 MIR548AY-201ENST00000617669 107 ntBASIC2.31□□□□□ -2.04
SMARCA1P28370 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.31□□□□□ -2.04
SMARCA1P28370 RNU6-653P-201ENST00000363074 106 ntBASIC2.3□□□□□ -2.04
SMARCA1P28370 RNA5SP323-201ENST00000391094 133 ntBASIC2.3□□□□□ -2.04
SMARCA1P28370 AL158823.1-201ENST00000418441 478 ntBASIC2.3□□□□□ -2.04
SMARCA1P28370 AL021397.1-201ENST00000451806 248 ntBASIC2.3□□□□□ -2.04
SMARCA1P28370 RPS26P45-201ENST00000471748 340 ntBASIC2.3□□□□□ -2.04
SMARCA1P28370 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.3□□□□□ -2.04
SMARCA1P28370 RNA5SP182-201ENST00000516064 82 ntBASIC2.3□□□□□ -2.04
SMARCA1P28370 Y_RNA.676-201ENST00000516393 96 ntBASIC2.3□□□□□ -2.04
SMARCA1P28370 MIR5094-201ENST00000578766 85 ntBASIC2.3□□□□□ -2.04
SMARCA1P28370 AC091178.2-201ENST00000584401 117 ntBASIC2.3□□□□□ -2.04
SMARCA1P28370 AC002984.1-201ENST00000591692 448 ntBASIC2.3□□□□□ -2.04
SMARCA1P28370 Y_RNA.783-201ENST00000613546 102 ntBASIC2.3□□□□□ -2.04
SMARCA1P28370 AL359851.1-201ENST00000569460 4997 ntBASIC2.3□□□□□ -2.04
SMARCA1P28370 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
SMARCA1P28370 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.29□□□□□ -2.04
SMARCA1P28370 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
SMARCA1P28370 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.29□□□□□ -2.04
SMARCA1P28370 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
SMARCA1P28370 RNA5SP276-201ENST00000362580 94 ntBASIC2.29□□□□□ -2.04
SMARCA1P28370 RNU4-13P-201ENST00000364019 141 ntBASIC2.29□□□□□ -2.04
SMARCA1P28370 RNU4-10P-201ENST00000364383 140 ntBASIC2.29□□□□□ -2.04
SMARCA1P28370 Y_RNA.297-201ENST00000364950 91 ntBASIC2.29□□□□□ -2.04
SMARCA1P28370 SNORA36B-201ENST00000410438 131 ntBASIC2.29□□□□□ -2.04
SMARCA1P28370 AC091021.1-201ENST00000468051 388 ntBASIC2.29□□□□□ -2.04
SMARCA1P28370 AC024995.1-201ENST00000523014 93 ntBASIC2.29□□□□□ -2.04
SMARCA1P28370 MIR4287-201ENST00000579398 78 ntBASIC2.29□□□□□ -2.04
SMARCA1P28370 AP000553.5-201ENST00000641933 54 ntBASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 122.3 ms