Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC006157.1-201ENST00000611750 366 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 AC133104.2-201ENST00000615272 193 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 MIR5701-2-201ENST00000615634 82 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 U6.73-201ENST00000619194 103 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 AC006001.4-201ENST00000622243 395 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
COL5A3P25940 RNU6-490P-201ENST00000362985 107 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 RNY4P3-201ENST00000365254 95 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 Y_RNA.428-201ENST00000384078 102 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 RNY3P4-201ENST00000384428 101 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 RNA5SP323-201ENST00000391094 133 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 RNA5SP504-201ENST00000410676 117 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.69□□□□□ -2.3
COL5A3P25940 AC245047.4-201ENST00000433189 144 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 AL135790.2-201ENST00000437701 267 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 snoU13.27-201ENST00000459278 104 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 MTND3P22-201ENST00000510932 243 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 AC018448.1-201ENST00000552843 316 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 AC006600.1-201ENST00000572529 153 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 MIR548S-201ENST00000581352 82 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.69□□□□□ -2.3
COL5A3P25940 AL357075.2-201ENST00000614906 189 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 AC004467.1-201ENST00000615678 330 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
COL5A3P25940 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.69□□□□□ -2.3
COL5A3P25940 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.69□□□□□ -2.3
COL5A3P25940 U6.108-201ENST00000637764 58 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 SNORA63D-201ENST00000364359 132 ntBASIC0.68□□□□□ -2.3
COL5A3P25940 SNORA72.2-201ENST00000365028 127 ntBASIC0.68□□□□□ -2.3
COL5A3P25940 RNU6-1310P-201ENST00000384153 107 ntBASIC0.68□□□□□ -2.3
COL5A3P25940 RNU6-296P-201ENST00000384608 107 ntBASIC0.68□□□□□ -2.3
COL5A3P25940 RNU6-440P-201ENST00000390882 105 ntBASIC0.68□□□□□ -2.3
COL5A3P25940 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC0.68□□□□□ -2.3
COL5A3P25940 MTCO2P27-201ENST00000420740 428 ntBASIC0.68□□□□□ -2.3
COL5A3P25940 AF228730.4-201ENST00000421457 183 ntBASIC0.68□□□□□ -2.3
COL5A3P25940 AC096644.2-201ENST00000429278 159 ntBASIC0.68□□□□□ -2.3
COL5A3P25940 RNU7-152P-201ENST00000458982 64 ntBASIC0.68□□□□□ -2.3
COL5A3P25940 RPS27P22-201ENST00000478056 241 ntBASIC0.68□□□□□ -2.3
COL5A3P25940 AC099513.1-201ENST00000490423 301 ntBASIC0.68□□□□□ -2.3
COL5A3P25940 AC022493.2-201ENST00000506122 481 ntBASIC0.68□□□□□ -2.3
COL5A3P25940 RNU6-1012P-201ENST00000516606 109 ntBASIC0.68□□□□□ -2.3
COL5A3P25940 AC023157.2-201ENST00000540596 141 ntBASIC0.68□□□□□ -2.3
COL5A3P25940 RAB11AP2-201ENST00000545905 639 ntBASIC0.68□□□□□ -2.3
COL5A3P25940 AL442163.3-201ENST00000554110 156 ntBASIC0.68□□□□□ -2.3
COL5A3P25940 SNORA77B-201ENST00000578179 125 ntBASIC0.68□□□□□ -2.3
COL5A3P25940 MIR4438-201ENST00000585271 93 ntBASIC0.68□□□□□ -2.3
COL5A3P25940 AC069114.2-201ENST00000604699 304 ntBASIC0.68□□□□□ -2.3
COL5A3P25940 RNU6-324P-201ENST00000363957 106 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 SNORD114-15-201ENST00000364687 72 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 RNU6-407P-201ENST00000365280 104 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
COL5A3P25940 RNU6-1001P-201ENST00000411265 100 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 COX6CP10-201ENST00000416832 224 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 Z98949.2-201ENST00000440996 144 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 AC069257.2-201ENST00000441819 155 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 FCF1P4-201ENST00000448326 183 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 RPS26P55-201ENST00000471178 356 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 RNU7-99P-201ENST00000516271 62 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 SNORA62.5-201ENST00000516634 120 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 AC024995.1-201ENST00000523014 93 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 MIR3937-201ENST00000580135 106 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 AL117336.2-201ENST00000602435 335 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 AL359075.3-201ENST00000613288 217 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 U6.115-201ENST00000636045 103 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 MIR410-201ENST00000362222 80 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 RNY3P11-201ENST00000364153 102 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 Y_RNA.243-201ENST00000364481 109 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 Y_RNA.463-201ENST00000384271 102 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 Y_RNA.496-201ENST00000384444 101 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 SNORA75.6-201ENST00000391318 127 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 AL161935.2-201ENST00000414627 60 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 MRPS18CP6-201ENST00000423587 223 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.67□□□□□ -2.3
COL5A3P25940 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.67□□□□□ -2.3
COL5A3P25940 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.67□□□□□ -2.3
COL5A3P25940 HSPE1P13-201ENST00000451143 297 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC0.67□□□□□ -2.3
COL5A3P25940 AL049830.1-201ENST00000468034 425 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 RPL30P7-201ENST00000479312 323 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 RNA5SP404-201ENST00000517118 132 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.67□□□□□ -2.3
COL5A3P25940 MIR4795-201ENST00000584182 89 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 AC022432.1-201ENST00000595739 310 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 AC012676.2-201ENST00000619258 186 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 AC104985.2-201ENST00000620598 500 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 MIR8054-201ENST00000620877 86 ntBASIC0.67□□□□□ -2.3
COL5A3P25940 Y_RNA.27-201ENST00000362540 103 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 Y_RNA.813-201ENST00000364639 102 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 Y_RNA.419-201ENST00000384041 102 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 RNU6-136P-201ENST00000384663 107 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 MIR329-2-201ENST00000385029 84 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 Y_RNA.579-201ENST00000390939 94 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 RNY4P36-201ENST00000391116 96 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 MRPL35P1-201ENST00000404272 572 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 Z95118.1-201ENST00000421372 247 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 MTND1P14-201ENST00000427400 950 ntBASIC0.66□□□□□ -2.3
COL5A3P25940 RAB28P5-201ENST00000427490 651 ntBASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms