Protein–RNA interactions for Protein: P03956

MMP1, Interstitial collagenase, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP1P03956 Y_RNA.485-201ENST00000384395 102 ntBASIC1.1□□□□□ -2.23
MMP1P03956 RNU6-1199P-201ENST00000411249 104 ntBASIC1.1□□□□□ -2.23
MMP1P03956 FCF1P4-201ENST00000448326 183 ntBASIC1.1□□□□□ -2.23
MMP1P03956 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.1□□□□□ -2.23
MMP1P03956 Y_RNA.661-201ENST00000516003 99 ntBASIC1.1□□□□□ -2.23
MMP1P03956 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.1□□□□□ -2.23
MMP1P03956 AC023442.1-201ENST00000531247 422 ntBASIC1.1□□□□□ -2.23
MMP1P03956 AC019288.1-201ENST00000557918 224 ntBASIC1.1□□□□□ -2.23
MMP1P03956 MIR4659A-201ENST00000580269 81 ntBASIC1.1□□□□□ -2.23
MMP1P03956 VN1R91P-201ENST00000594377 169 ntBASIC1.1□□□□□ -2.23
MMP1P03956 AL080274.1-201ENST00000605565 220 ntBASIC1.1□□□□□ -2.23
MMP1P03956 AC004467.1-201ENST00000615678 330 ntBASIC1.1□□□□□ -2.23
MMP1P03956 MIR8054-201ENST00000620877 86 ntBASIC1.1□□□□□ -2.23
MMP1P03956 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.09□□□□□ -2.23
MMP1P03956 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
MMP1P03956 Y_RNA.197-201ENST00000364004 102 ntBASIC1.09□□□□□ -2.23
MMP1P03956 RNU1-115P-201ENST00000365329 160 ntBASIC1.09□□□□□ -2.23
MMP1P03956 SNORD42.2-201ENST00000365570 69 ntBASIC1.09□□□□□ -2.23
MMP1P03956 Y_RNA.394-201ENST00000383942 103 ntBASIC1.09□□□□□ -2.23
MMP1P03956 Y_RNA.395-201ENST00000383945 109 ntBASIC1.09□□□□□ -2.23
MMP1P03956 SNORD78.2-201ENST00000391076 69 ntBASIC1.09□□□□□ -2.23
MMP1P03956 RNA5SP475-201ENST00000410568 110 ntBASIC1.09□□□□□ -2.23
MMP1P03956 MTCO3P19-201ENST00000415864 321 ntBASIC1.09□□□□□ -2.23
MMP1P03956 AL137792.2-201ENST00000443484 235 ntBASIC1.09□□□□□ -2.23
MMP1P03956 RNA5SP20-201ENST00000515976 84 ntBASIC1.09□□□□□ -2.23
MMP1P03956 RNU6-976P-201ENST00000516086 111 ntBASIC1.09□□□□□ -2.23
MMP1P03956 MIR5188-201ENST00000583467 113 ntBASIC1.09□□□□□ -2.23
MMP1P03956 AC021506.2-201ENST00000612354 169 ntBASIC1.09□□□□□ -2.23
MMP1P03956 AC240442.1-201ENST00000616055 283 ntBASIC1.09□□□□□ -2.23
MMP1P03956 uc_338.22-201ENST00000622722 187 ntBASIC1.09□□□□□ -2.23
MMP1P03956 AL008636.1-201ENST00000625038 1018 ntBASIC1.09□□□□□ -2.23
MMP1P03956 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.09□□□□□ -2.23
MMP1P03956 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.09□□□□□ -2.24
MMP1P03956 AC018630.2-201ENST00000534866 2403 ntBASIC1.08□□□□□ -2.24
MMP1P03956 RNA5SP327-201ENST00000362494 101 ntBASIC1.08□□□□□ -2.24
MMP1P03956 RNU6-626P-201ENST00000363354 107 ntBASIC1.08□□□□□ -2.24
MMP1P03956 RNU6-407P-201ENST00000365280 104 ntBASIC1.08□□□□□ -2.24
MMP1P03956 RNU6-20P-201ENST00000384106 107 ntBASIC1.08□□□□□ -2.24
MMP1P03956 MIR532-201ENST00000385025 91 ntBASIC1.08□□□□□ -2.24
MMP1P03956 MIR873-201ENST00000401120 77 ntBASIC1.08□□□□□ -2.24
MMP1P03956 AC245047.3-201ENST00000429428 127 ntBASIC1.08□□□□□ -2.24
MMP1P03956 Y_RNA.639-201ENST00000458981 102 ntBASIC1.08□□□□□ -2.24
MMP1P03956 RNU7-172P-201ENST00000517125 64 ntBASIC1.08□□□□□ -2.24
MMP1P03956 MIR3684-201ENST00000579779 74 ntBASIC1.08□□□□□ -2.24
MMP1P03956 AC091178.2-201ENST00000584401 117 ntBASIC1.08□□□□□ -2.24
MMP1P03956 MIR6857-201ENST00000613267 93 ntBASIC1.08□□□□□ -2.24
MMP1P03956 AC007485.1-201ENST00000616755 206 ntBASIC1.08□□□□□ -2.24
MMP1P03956 AL606534.2-204ENST00000635008 178 ntBASIC1.08□□□□□ -2.24
MMP1P03956 MTND4P29-201ENST00000503122 1372 ntBASIC1.08□□□□□ -2.24
MMP1P03956 Y_RNA.31-201ENST00000362574 102 ntBASIC1.07□□□□□ -2.24
MMP1P03956 Y_RNA.205-201ENST00000364128 113 ntBASIC1.07□□□□□ -2.24
MMP1P03956 RNU1-133P-201ENST00000364867 167 ntBASIC1.07□□□□□ -2.24
MMP1P03956 RNA5SP259-201ENST00000365541 109 ntBASIC1.07□□□□□ -2.24
MMP1P03956 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.07□□□□□ -2.24
MMP1P03956 RNU6-1310P-201ENST00000384153 107 ntBASIC1.07□□□□□ -2.24
MMP1P03956 RNU6-1031P-201ENST00000384773 107 ntBASIC1.07□□□□□ -2.24
MMP1P03956 RNU6-1105P-201ENST00000384774 107 ntBASIC1.07□□□□□ -2.24
MMP1P03956 MIR628-201ENST00000385229 95 ntBASIC1.07□□□□□ -2.24
MMP1P03956 MIR618-201ENST00000385287 98 ntBASIC1.07□□□□□ -2.24
MMP1P03956 RNU6-440P-201ENST00000390882 105 ntBASIC1.07□□□□□ -2.24
MMP1P03956 MRPL42P3-201ENST00000401492 326 ntBASIC1.07□□□□□ -2.24
MMP1P03956 RNU2-54P-201ENST00000410299 190 ntBASIC1.07□□□□□ -2.24
MMP1P03956 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.07□□□□□ -2.24
MMP1P03956 AC091021.1-201ENST00000468051 388 ntBASIC1.07□□□□□ -2.24
MMP1P03956 CYP3A137P-201ENST00000562436 69 ntBASIC1.07□□□□□ -2.24
MMP1P03956 MIR3664-201ENST00000579074 99 ntBASIC1.07□□□□□ -2.24
MMP1P03956 MIR8065-201ENST00000620577 100 ntBASIC1.07□□□□□ -2.24
MMP1P03956 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.07□□□□□ -2.24
MMP1P03956 MIR6079-201ENST00000635807 62 ntBASIC1.07□□□□□ -2.24
MMP1P03956 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.06□□□□□ -2.24
MMP1P03956 MIR369-201ENST00000362155 70 ntBASIC1.06□□□□□ -2.24
MMP1P03956 SNORA25.8-201ENST00000364831 128 ntBASIC1.06□□□□□ -2.24
MMP1P03956 Y_RNA.458-201ENST00000384240 102 ntBASIC1.06□□□□□ -2.24
MMP1P03956 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
MMP1P03956 Y_RNA.604-201ENST00000410574 102 ntBASIC1.06□□□□□ -2.24
MMP1P03956 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.06□□□□□ -2.24
MMP1P03956 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.06□□□□□ -2.24
MMP1P03956 RNU6-63P-201ENST00000516690 95 ntBASIC1.06□□□□□ -2.24
MMP1P03956 MIR3973-201ENST00000579824 107 ntBASIC1.06□□□□□ -2.24
MMP1P03956 MIR4423-201ENST00000580922 80 ntBASIC1.06□□□□□ -2.24
MMP1P03956 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.06□□□□□ -2.24
MMP1P03956 AC010205.1-201ENST00000616668 449 ntBASIC1.06□□□□□ -2.24
MMP1P03956 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.06□□□□□ -2.24
MMP1P03956 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
MMP1P03956 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
MMP1P03956 SNORD114-7-201ENST00000362520 77 ntBASIC1.05□□□□□ -2.24
MMP1P03956 Y_RNA.39-201ENST00000362620 98 ntBASIC1.05□□□□□ -2.24
MMP1P03956 Y_RNA.172-201ENST00000363765 102 ntBASIC1.05□□□□□ -2.24
MMP1P03956 Y_RNA.446-201ENST00000384178 104 ntBASIC1.05□□□□□ -2.24
MMP1P03956 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
MMP1P03956 RNU6-308P-201ENST00000390957 107 ntBASIC1.05□□□□□ -2.24
MMP1P03956 AL031003.1-201ENST00000404229 172 ntBASIC1.05□□□□□ -2.24
MMP1P03956 RNU5A-5P-201ENST00000411054 116 ntBASIC1.05□□□□□ -2.24
MMP1P03956 PMCHL1-202ENST00000423102 261 ntBASIC1.05□□□□□ -2.24
MMP1P03956 AL160004.2-201ENST00000432935 350 ntBASIC1.05□□□□□ -2.24
MMP1P03956 SNORA40.14-201ENST00000516543 86 ntBASIC1.05□□□□□ -2.24
MMP1P03956 RN7SKP88-201ENST00000516847 250 ntBASIC1.05□□□□□ -2.24
MMP1P03956 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.05□□□□□ -2.24
MMP1P03956 RN7SL793P-201ENST00000583259 296 ntBASIC1.05□□□□□ -2.24
MMP1P03956 AC005176.2-201ENST00000596933 147 ntBASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 178.8 ms