Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 RNU6-1048P-201ENST00000364054 107 ntBASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 SNORA72-201ENST00000384339 132 ntBASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 RNU6-136P-201ENST00000384663 107 ntBASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 Y_RNA.590-201ENST00000410140 107 ntBASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 BTF3P11-201ENST00000426582 477 ntBASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 HSPE1P21-201ENST00000438283 308 ntBASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 AC091021.1-201ENST00000468051 388 ntBASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 TRBV12-1-201ENST00000479785 344 ntBASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 RPS29P11-201ENST00000496507 171 ntBASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 RNU4-71P-201ENST00000516258 113 ntBASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 RNU6-1096P-201ENST00000517089 102 ntBASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 RNU6-111P-201ENST00000517179 105 ntBASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 AC024405.2-202ENST00000532731 184 ntBASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 AC127455.1-201ENST00000565496 145 ntBASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 MIR5692C2-201ENST00000577959 77 ntBASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 POLR3GP1-201ENST00000594073 261 ntBASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 AC011921.3-201ENST00000605540 361 ntBASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 AC073349.3-201ENST00000617616 186 ntBASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 uc_338.20-201ENST00000621563 178 ntBASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 ZNF702P-202ENST00000434269 1966 ntBASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
TCRBV7S3A2A0A539 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.89□□□□□ -2.11
TCRBV7S3A2A0A539 Y_RNA.76-201ENST00000362931 109 ntBASIC1.89□□□□□ -2.11
TCRBV7S3A2A0A539 RNU6-338P-201ENST00000383888 105 ntBASIC1.89□□□□□ -2.11
TCRBV7S3A2A0A539 RNU6-144P-201ENST00000383951 107 ntBASIC1.89□□□□□ -2.11
TCRBV7S3A2A0A539 MIR520A-201ENST00000384862 85 ntBASIC1.89□□□□□ -2.11
TCRBV7S3A2A0A539 RNA5SP212-201ENST00000391223 107 ntBASIC1.89□□□□□ -2.11
TCRBV7S3A2A0A539 AL512604.1-201ENST00000404812 257 ntBASIC1.89□□□□□ -2.11
TCRBV7S3A2A0A539 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.89□□□□□ -2.11
TCRBV7S3A2A0A539 AC009310.1-201ENST00000414414 451 ntBASIC1.89□□□□□ -2.11
TCRBV7S3A2A0A539 AL606517.2-201ENST00000442855 241 ntBASIC1.89□□□□□ -2.11
TCRBV7S3A2A0A539 UBE2DNL-203ENST00000474922 222 ntBASIC1.89□□□□□ -2.11
TCRBV7S3A2A0A539 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.89□□□□□ -2.11
TCRBV7S3A2A0A539 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.89□□□□□ -2.11
TCRBV7S3A2A0A539 MIR3671-201ENST00000580455 88 ntBASIC1.89□□□□□ -2.11
TCRBV7S3A2A0A539 AL442067.1-201ENST00000613261 223 ntBASIC1.89□□□□□ -2.11
TCRBV7S3A2A0A539 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
TCRBV7S3A2A0A539 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
TCRBV7S3A2A0A539 AC131280.1-202ENST00000624067 4211 ntBASIC1.89□□□□□ -2.11
TCRBV7S3A2A0A539 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
TCRBV7S3A2A0A539 SNORA16.1-201ENST00000364597 132 ntBASIC1.88□□□□□ -2.11
TCRBV7S3A2A0A539 MTCO2P33-201ENST00000402100 465 ntBASIC1.88□□□□□ -2.11
TCRBV7S3A2A0A539 Y_RNA.638-201ENST00000459374 113 ntBASIC1.88□□□□□ -2.11
TCRBV7S3A2A0A539 COX6CP14-201ENST00000469580 174 ntBASIC1.88□□□□□ -2.11
TCRBV7S3A2A0A539 AC117454.1-201ENST00000491120 168 ntBASIC1.88□□□□□ -2.11
TCRBV7S3A2A0A539 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.88□□□□□ -2.11
TCRBV7S3A2A0A539 MIR6895-201ENST00000613497 78 ntBASIC1.88□□□□□ -2.11
TCRBV7S3A2A0A539 AC141273.2-201ENST00000618989 130 ntBASIC1.88□□□□□ -2.11
TCRBV7S3A2A0A539 AC134026.1-201ENST00000623249 2239 ntBASIC1.87□□□□□ -2.11
TCRBV7S3A2A0A539 RNU6-674P-201ENST00000363831 107 ntBASIC1.87□□□□□ -2.11
TCRBV7S3A2A0A539 Y_RNA.269-201ENST00000364685 89 ntBASIC1.87□□□□□ -2.11
TCRBV7S3A2A0A539 Y_RNA.292-201ENST00000364904 97 ntBASIC1.87□□□□□ -2.11
TCRBV7S3A2A0A539 SNORD48-201ENST00000364953 64 ntBASIC1.87□□□□□ -2.11
TCRBV7S3A2A0A539 Y_RNA.304-201ENST00000365011 112 ntBASIC1.87□□□□□ -2.11
TCRBV7S3A2A0A539 RNA5SP109-201ENST00000391010 116 ntBASIC1.87□□□□□ -2.11
TCRBV7S3A2A0A539 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.87□□□□□ -2.11
TCRBV7S3A2A0A539 SNORA36B-201ENST00000410438 131 ntBASIC1.87□□□□□ -2.11
TCRBV7S3A2A0A539 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.87□□□□□ -2.11
TCRBV7S3A2A0A539 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.87□□□□□ -2.11
TCRBV7S3A2A0A539 Y_RNA.679-201ENST00000516416 91 ntBASIC1.87□□□□□ -2.11
TCRBV7S3A2A0A539 AP002004.2-201ENST00000531656 154 ntBASIC1.87□□□□□ -2.11
TCRBV7S3A2A0A539 AC011604.1-201ENST00000545978 196 ntBASIC1.87□□□□□ -2.11
TCRBV7S3A2A0A539 MIR5688-201ENST00000580619 83 ntBASIC1.87□□□□□ -2.11
TCRBV7S3A2A0A539 AC005357.1-201ENST00000588399 301 ntBASIC1.87□□□□□ -2.11
TCRBV7S3A2A0A539 AL773524.1-201ENST00000614065 229 ntBASIC1.87□□□□□ -2.11
TCRBV7S3A2A0A539 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
TCRBV7S3A2A0A539 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.86□□□□□ -2.11
TCRBV7S3A2A0A539 AC068700.1-201ENST00000565862 3754 ntBASIC1.86□□□□□ -2.11
TCRBV7S3A2A0A539 Y_RNA.65-201ENST00000362846 100 ntBASIC1.86□□□□□ -2.11
TCRBV7S3A2A0A539 RNY4P28-201ENST00000365281 93 ntBASIC1.86□□□□□ -2.11
TCRBV7S3A2A0A539 Y_RNA.552-201ENST00000384665 112 ntBASIC1.86□□□□□ -2.11
TCRBV7S3A2A0A539 RNU6ATAC23P-201ENST00000408448 123 ntBASIC1.86□□□□□ -2.11
TCRBV7S3A2A0A539 AC245047.3-201ENST00000429428 127 ntBASIC1.86□□□□□ -2.11
TCRBV7S3A2A0A539 RPL23AP63-201ENST00000498752 471 ntBASIC1.86□□□□□ -2.11
TCRBV7S3A2A0A539 RNA5SP481-201ENST00000516814 122 ntBASIC1.86□□□□□ -2.11
TCRBV7S3A2A0A539 RNA5SP437-201ENST00000517249 129 ntBASIC1.86□□□□□ -2.11
TCRBV7S3A2A0A539 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.86□□□□□ -2.11
TCRBV7S3A2A0A539 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.86□□□□□ -2.11
TCRBV7S3A2A0A539 MIR4419B-201ENST00000577260 68 ntBASIC1.86□□□□□ -2.11
TCRBV7S3A2A0A539 AC009779.6-201ENST00000603972 165 ntBASIC1.86□□□□□ -2.11
TCRBV7S3A2A0A539 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.86□□□□□ -2.11
TCRBV7S3A2A0A539 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
TCRBV7S3A2A0A539 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
TCRBV7S3A2A0A539 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.86□□□□□ -2.11
TCRBV7S3A2A0A539 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
TCRBV7S3A2A0A539 RNA5SP276-201ENST00000362580 94 ntBASIC1.85□□□□□ -2.11
TCRBV7S3A2A0A539 RNU6-1205P-201ENST00000363625 106 ntBASIC1.85□□□□□ -2.11
TCRBV7S3A2A0A539 RNU6-950P-201ENST00000384651 107 ntBASIC1.85□□□□□ -2.11
TCRBV7S3A2A0A539 MIR634-201ENST00000385208 97 ntBASIC1.85□□□□□ -2.11
TCRBV7S3A2A0A539 RNU6-847P-201ENST00000411115 108 ntBASIC1.85□□□□□ -2.11
TCRBV7S3A2A0A539 RNA5SP508-201ENST00000411327 119 ntBASIC1.85□□□□□ -2.11
TCRBV7S3A2A0A539 SNORD116-28-201ENST00000516123 91 ntBASIC1.85□□□□□ -2.11
TCRBV7S3A2A0A539 SNORA31.10-201ENST00000516482 106 ntBASIC1.85□□□□□ -2.11
TCRBV7S3A2A0A539 RNU6-1291P-201ENST00000516591 104 ntBASIC1.85□□□□□ -2.11
TCRBV7S3A2A0A539 RNU6-388P-201ENST00000517012 105 ntBASIC1.85□□□□□ -2.11
TCRBV7S3A2A0A539 RNU6-389P-201ENST00000517048 105 ntBASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 125.9 ms