Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 CYCTP-201ENST00000504253 315 ntBASIC1.09□□□□□ -2.23
FOXA2Q9Y261 RNU6-237P-201ENST00000515985 71 ntBASIC1.09□□□□□ -2.23
FOXA2Q9Y261 RNU6-1012P-201ENST00000516606 109 ntBASIC1.09□□□□□ -2.23
FOXA2Q9Y261 RNU6-699P-201ENST00000517081 110 ntBASIC1.09□□□□□ -2.23
FOXA2Q9Y261 RNA5SP404-201ENST00000517118 132 ntBASIC1.09□□□□□ -2.23
FOXA2Q9Y261 AP000942.3-201ENST00000603702 160 ntBASIC1.09□□□□□ -2.23
FOXA2Q9Y261 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.08□□□□□ -2.24
FOXA2Q9Y261 MIRLET7C-201ENST00000362160 84 ntBASIC1.08□□□□□ -2.24
FOXA2Q9Y261 MIR378A-201ENST00000362177 66 ntBASIC1.08□□□□□ -2.24
FOXA2Q9Y261 RNU6-1040P-201ENST00000383974 107 ntBASIC1.08□□□□□ -2.24
FOXA2Q9Y261 RNU6-1080P-201ENST00000383982 107 ntBASIC1.08□□□□□ -2.24
FOXA2Q9Y261 MIR559-201ENST00000385188 96 ntBASIC1.08□□□□□ -2.24
FOXA2Q9Y261 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.08□□□□□ -2.24
FOXA2Q9Y261 MTCO2P27-201ENST00000420740 428 ntBASIC1.08□□□□□ -2.24
FOXA2Q9Y261 RPS4XP11-201ENST00000446897 772 ntBASIC1.08□□□□□ -2.24
FOXA2Q9Y261 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.08□□□□□ -2.24
FOXA2Q9Y261 AC048334.1-201ENST00000477975 159 ntBASIC1.08□□□□□ -2.24
FOXA2Q9Y261 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.08□□□□□ -2.24
FOXA2Q9Y261 RNU6-277P-201ENST00000516272 106 ntBASIC1.08□□□□□ -2.24
FOXA2Q9Y261 DNAJC19P9-201ENST00000555084 351 ntBASIC1.08□□□□□ -2.24
FOXA2Q9Y261 AC120024.3-201ENST00000603167 156 ntBASIC1.08□□□□□ -2.24
FOXA2Q9Y261 AC084781.2-201ENST00000615568 161 ntBASIC1.08□□□□□ -2.24
FOXA2Q9Y261 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.08□□□□□ -2.24
FOXA2Q9Y261 AC027335.2-201ENST00000624030 375 ntBASIC1.08□□□□□ -2.24
FOXA2Q9Y261 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
FOXA2Q9Y261 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
FOXA2Q9Y261 Y_RNA.27-201ENST00000362540 103 ntBASIC1.07□□□□□ -2.24
FOXA2Q9Y261 SNORA72.1-201ENST00000363485 129 ntBASIC1.07□□□□□ -2.24
FOXA2Q9Y261 RNU6-833P-201ENST00000363486 107 ntBASIC1.07□□□□□ -2.24
FOXA2Q9Y261 Y_RNA.428-201ENST00000384078 102 ntBASIC1.07□□□□□ -2.24
FOXA2Q9Y261 RNU6-910P-201ENST00000390844 107 ntBASIC1.07□□□□□ -2.24
FOXA2Q9Y261 PIGPP3-201ENST00000425307 415 ntBASIC1.07□□□□□ -2.24
FOXA2Q9Y261 Y_RNA.718-201ENST00000517110 102 ntBASIC1.07□□□□□ -2.24
FOXA2Q9Y261 RNU6-1116P-201ENST00000517269 99 ntBASIC1.07□□□□□ -2.24
FOXA2Q9Y261 AC068338.1-201ENST00000565567 176 ntBASIC1.07□□□□□ -2.24
FOXA2Q9Y261 AC006600.1-201ENST00000572529 153 ntBASIC1.07□□□□□ -2.24
FOXA2Q9Y261 MIR4421-201ENST00000578133 69 ntBASIC1.07□□□□□ -2.24
FOXA2Q9Y261 FAM106DP-201ENST00000586416 501 ntBASIC1.07□□□□□ -2.24
FOXA2Q9Y261 VN1R91P-201ENST00000594377 169 ntBASIC1.07□□□□□ -2.24
FOXA2Q9Y261 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.07□□□□□ -2.24
FOXA2Q9Y261 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
FOXA2Q9Y261 RNU4-79P-201ENST00000362764 141 ntBASIC1.06□□□□□ -2.24
FOXA2Q9Y261 Y_RNA.230-201ENST00000364348 109 ntBASIC1.06□□□□□ -2.24
FOXA2Q9Y261 SNORA70.7-201ENST00000384159 133 ntBASIC1.06□□□□□ -2.24
FOXA2Q9Y261 Y_RNA.446-201ENST00000384178 104 ntBASIC1.06□□□□□ -2.24
FOXA2Q9Y261 SNORD116-13-201ENST00000384408 92 ntBASIC1.06□□□□□ -2.24
FOXA2Q9Y261 SNORD116-29-201ENST00000384516 83 ntBASIC1.06□□□□□ -2.24
FOXA2Q9Y261 AC015922.2-201ENST00000435593 184 ntBASIC1.06□□□□□ -2.24
FOXA2Q9Y261 CHEK2P4-201ENST00000450340 246 ntBASIC1.06□□□□□ -2.24
FOXA2Q9Y261 LINC01399-202ENST00000458450 244 ntBASIC1.06□□□□□ -2.24
FOXA2Q9Y261 RNU7-95P-201ENST00000459222 64 ntBASIC1.06□□□□□ -2.24
FOXA2Q9Y261 SNORD116.3-201ENST00000517176 78 ntBASIC1.06□□□□□ -2.24
FOXA2Q9Y261 AC011604.1-201ENST00000545978 196 ntBASIC1.06□□□□□ -2.24
FOXA2Q9Y261 AL132765.2-201ENST00000610812 351 ntBASIC1.06□□□□□ -2.24
FOXA2Q9Y261 U6.92-201ENST00000636464 89 ntBASIC1.06□□□□□ -2.24
FOXA2Q9Y261 SNORA7.1-201ENST00000363750 139 ntBASIC1.05□□□□□ -2.24
FOXA2Q9Y261 RNU6-1283P-201ENST00000365314 105 ntBASIC1.05□□□□□ -2.24
FOXA2Q9Y261 RNU2-61P-201ENST00000411069 191 ntBASIC1.05□□□□□ -2.24
FOXA2Q9Y261 RNU6-1054P-201ENST00000411293 104 ntBASIC1.05□□□□□ -2.24
FOXA2Q9Y261 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.05□□□□□ -2.24
FOXA2Q9Y261 AC245047.7-201ENST00000440265 293 ntBASIC1.05□□□□□ -2.24
FOXA2Q9Y261 AC093019.1-201ENST00000443135 252 ntBASIC1.05□□□□□ -2.24
FOXA2Q9Y261 AC022616.4-201ENST00000522985 181 ntBASIC1.05□□□□□ -2.24
FOXA2Q9Y261 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.05□□□□□ -2.24
FOXA2Q9Y261 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.05□□□□□ -2.24
FOXA2Q9Y261 AL591926.4-201ENST00000616895 298 ntBASIC1.05□□□□□ -2.24
FOXA2Q9Y261 AC027279.3-201ENST00000625055 122 ntBASIC1.05□□□□□ -2.24
FOXA2Q9Y261 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.05□□□□□ -2.24
FOXA2Q9Y261 RNU6-708P-201ENST00000384217 107 ntBASIC1.04□□□□□ -2.24
FOXA2Q9Y261 AP1B1P2-201ENST00000416196 106 ntBASIC1.04□□□□□ -2.24
FOXA2Q9Y261 BTF3P4-201ENST00000418852 495 ntBASIC1.04□□□□□ -2.24
FOXA2Q9Y261 RNU1-123P-201ENST00000458950 160 ntBASIC1.04□□□□□ -2.24
FOXA2Q9Y261 AL355375.2-201ENST00000574825 175 ntBASIC1.04□□□□□ -2.24
FOXA2Q9Y261 MIR3124-201ENST00000582636 67 ntBASIC1.04□□□□□ -2.24
FOXA2Q9Y261 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.04□□□□□ -2.24
FOXA2Q9Y261 AC138305.3-201ENST00000624988 240 ntBASIC1.04□□□□□ -2.24
FOXA2Q9Y261 Y_RNA.70-201ENST00000362886 110 ntBASIC1.03□□□□□ -2.24
FOXA2Q9Y261 RNU1-124P-201ENST00000363861 145 ntBASIC1.03□□□□□ -2.24
FOXA2Q9Y261 Y_RNA.463-201ENST00000384271 102 ntBASIC1.03□□□□□ -2.24
FOXA2Q9Y261 MIR526A1-201ENST00000384897 85 ntBASIC1.03□□□□□ -2.24
FOXA2Q9Y261 MLLT10P1-201ENST00000418346 262 ntBASIC1.03□□□□□ -2.24
FOXA2Q9Y261 Y_RNA.632-201ENST00000459189 102 ntBASIC1.03□□□□□ -2.24
FOXA2Q9Y261 AC114811.1-201ENST00000507207 168 ntBASIC1.03□□□□□ -2.24
FOXA2Q9Y261 SNORD116-28-201ENST00000516123 91 ntBASIC1.03□□□□□ -2.24
FOXA2Q9Y261 RNU6-436P-201ENST00000516171 114 ntBASIC1.03□□□□□ -2.24
FOXA2Q9Y261 SNORD111.1-201ENST00000516421 86 ntBASIC1.03□□□□□ -2.24
FOXA2Q9Y261 RN7SKP295-201ENST00000517264 153 ntBASIC1.03□□□□□ -2.24
FOXA2Q9Y261 AC091812.1-201ENST00000432235 1948 ntBASIC1.03□□□□□ -2.25
FOXA2Q9Y261 Y_RNA.187-201ENST00000363918 113 ntBASIC1.02□□□□□ -2.25
FOXA2Q9Y261 MIR452-201ENST00000385020 85 ntBASIC1.02□□□□□ -2.25
FOXA2Q9Y261 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.02□□□□□ -2.25
FOXA2Q9Y261 RNU6-710P-201ENST00000410424 105 ntBASIC1.02□□□□□ -2.25
FOXA2Q9Y261 RNU6-1199P-201ENST00000411249 104 ntBASIC1.02□□□□□ -2.25
FOXA2Q9Y261 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.02□□□□□ -2.25
FOXA2Q9Y261 OR2A41P-201ENST00000473586 105 ntBASIC1.02□□□□□ -2.25
FOXA2Q9Y261 AC091951.2-201ENST00000500762 203 ntBASIC1.02□□□□□ -2.25
FOXA2Q9Y261 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.02□□□□□ -2.25
FOXA2Q9Y261 Y_RNA.661-201ENST00000516003 99 ntBASIC1.02□□□□□ -2.25
FOXA2Q9Y261 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.02□□□□□ -2.25
FOXA2Q9Y261 AC005972.2-201ENST00000604690 348 ntBASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms