Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RNU6-417P-201ENST00000384712 107 ntBASIC2.3□□□□□ -2.04
VSX1Q9NZR4 MIR1262-201ENST00000408276 93 ntBASIC2.3□□□□□ -2.04
VSX1Q9NZR4 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.3□□□□□ -2.04
VSX1Q9NZR4 RNA5SP181-201ENST00000410246 98 ntBASIC2.3□□□□□ -2.04
VSX1Q9NZR4 RNU2-52P-201ENST00000410680 190 ntBASIC2.3□□□□□ -2.04
VSX1Q9NZR4 RNU2-55P-201ENST00000411146 174 ntBASIC2.3□□□□□ -2.04
VSX1Q9NZR4 Z92545.1-201ENST00000411782 234 ntBASIC2.3□□□□□ -2.04
VSX1Q9NZR4 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.3□□□□□ -2.04
VSX1Q9NZR4 AL109933.2-201ENST00000452651 260 ntBASIC2.3□□□□□ -2.04
VSX1Q9NZR4 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.3□□□□□ -2.04
VSX1Q9NZR4 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.3□□□□□ -2.04
VSX1Q9NZR4 Y_RNA.242-201ENST00000364473 110 ntBASIC2.29□□□□□ -2.04
VSX1Q9NZR4 DEFA7P-201ENST00000382676 285 ntBASIC2.29□□□□□ -2.04
VSX1Q9NZR4 MIR483-201ENST00000385070 76 ntBASIC2.29□□□□□ -2.04
VSX1Q9NZR4 AC108938.1-201ENST00000451204 136 ntBASIC2.29□□□□□ -2.04
VSX1Q9NZR4 RNU6-1041P-201ENST00000516254 102 ntBASIC2.29□□□□□ -2.04
VSX1Q9NZR4 RNU6-63P-201ENST00000516690 95 ntBASIC2.29□□□□□ -2.04
VSX1Q9NZR4 RNA5SP402-201ENST00000517148 110 ntBASIC2.29□□□□□ -2.04
VSX1Q9NZR4 MIR4431-201ENST00000579990 94 ntBASIC2.29□□□□□ -2.04
VSX1Q9NZR4 ELOCP29-201ENST00000588193 334 ntBASIC2.29□□□□□ -2.04
VSX1Q9NZR4 AC005786.1-201ENST00000588553 154 ntBASIC2.29□□□□□ -2.04
VSX1Q9NZR4 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
VSX1Q9NZR4 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
VSX1Q9NZR4 RNU6-23P-201ENST00000363283 107 ntBASIC2.28□□□□□ -2.04
VSX1Q9NZR4 RNA5SP493-201ENST00000364115 91 ntBASIC2.28□□□□□ -2.04
VSX1Q9NZR4 snoU2_19.4-201ENST00000364329 80 ntBASIC2.28□□□□□ -2.04
VSX1Q9NZR4 Y_RNA.229-201ENST00000364347 113 ntBASIC2.28□□□□□ -2.04
VSX1Q9NZR4 SNORD114-6-201ENST00000364393 72 ntBASIC2.28□□□□□ -2.04
VSX1Q9NZR4 RNU6-728P-201ENST00000365375 104 ntBASIC2.28□□□□□ -2.04
VSX1Q9NZR4 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.28□□□□□ -2.04
VSX1Q9NZR4 SNORA80E-201ENST00000384744 137 ntBASIC2.28□□□□□ -2.04
VSX1Q9NZR4 RN7SKP101-201ENST00000411376 320 ntBASIC2.28□□□□□ -2.04
VSX1Q9NZR4 RPS12P2-201ENST00000439728 269 ntBASIC2.28□□□□□ -2.04
VSX1Q9NZR4 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.28□□□□□ -2.04
VSX1Q9NZR4 AC096725.1-201ENST00000514266 313 ntBASIC2.28□□□□□ -2.04
VSX1Q9NZR4 Y_RNA.703-201ENST00000516846 111 ntBASIC2.28□□□□□ -2.04
VSX1Q9NZR4 RNU6-789P-201ENST00000517105 102 ntBASIC2.28□□□□□ -2.04
VSX1Q9NZR4 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.28□□□□□ -2.04
VSX1Q9NZR4 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.28□□□□□ -2.04
VSX1Q9NZR4 AC100821.1-201ENST00000523153 2479 ntBASIC2.28□□□□□ -2.04
VSX1Q9NZR4 RNU1-58P-201ENST00000362413 163 ntBASIC2.27□□□□□ -2.05
VSX1Q9NZR4 RNU6-859P-201ENST00000362728 107 ntBASIC2.27□□□□□ -2.05
VSX1Q9NZR4 Y_RNA.203-201ENST00000364106 102 ntBASIC2.27□□□□□ -2.05
VSX1Q9NZR4 RNU4-84P-201ENST00000364200 139 ntBASIC2.27□□□□□ -2.05
VSX1Q9NZR4 Y_RNA.412-201ENST00000384001 104 ntBASIC2.27□□□□□ -2.05
VSX1Q9NZR4 RNU6-239P-201ENST00000390990 99 ntBASIC2.27□□□□□ -2.05
VSX1Q9NZR4 RNA5SP323-201ENST00000391094 133 ntBASIC2.27□□□□□ -2.05
VSX1Q9NZR4 AL117342.1-201ENST00000404861 406 ntBASIC2.27□□□□□ -2.05
VSX1Q9NZR4 RNU6-1186P-201ENST00000410429 97 ntBASIC2.27□□□□□ -2.05
VSX1Q9NZR4 RN7SKP51-201ENST00000410781 304 ntBASIC2.27□□□□□ -2.05
VSX1Q9NZR4 COTL1P1-201ENST00000422309 375 ntBASIC2.27□□□□□ -2.05
VSX1Q9NZR4 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.27□□□□□ -2.05
VSX1Q9NZR4 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.27□□□□□ -2.05
VSX1Q9NZR4 RPS26P45-201ENST00000471748 340 ntBASIC2.27□□□□□ -2.05
VSX1Q9NZR4 AC074198.2-201ENST00000508153 258 ntBASIC2.27□□□□□ -2.05
VSX1Q9NZR4 RNU6-341P-201ENST00000516973 96 ntBASIC2.27□□□□□ -2.05
VSX1Q9NZR4 AC109810.1-201ENST00000534066 224 ntBASIC2.27□□□□□ -2.05
VSX1Q9NZR4 AC011604.1-201ENST00000545978 196 ntBASIC2.27□□□□□ -2.05
VSX1Q9NZR4 GTF3AP2-201ENST00000557014 266 ntBASIC2.27□□□□□ -2.05
VSX1Q9NZR4 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.27□□□□□ -2.05
VSX1Q9NZR4 MIR3144-201ENST00000579460 79 ntBASIC2.27□□□□□ -2.05
VSX1Q9NZR4 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
VSX1Q9NZR4 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.27□□□□□ -2.05
VSX1Q9NZR4 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
VSX1Q9NZR4 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
VSX1Q9NZR4 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
VSX1Q9NZR4 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
VSX1Q9NZR4 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
VSX1Q9NZR4 RNU4-41P-201ENST00000364426 143 ntBASIC2.26□□□□□ -2.05
VSX1Q9NZR4 RNU6-1164P-201ENST00000364428 107 ntBASIC2.26□□□□□ -2.05
VSX1Q9NZR4 Y_RNA.272-201ENST00000364696 102 ntBASIC2.26□□□□□ -2.05
VSX1Q9NZR4 SNORA6-201ENST00000384033 151 ntBASIC2.26□□□□□ -2.05
VSX1Q9NZR4 RNU1-148P-201ENST00000384472 162 ntBASIC2.26□□□□□ -2.05
VSX1Q9NZR4 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
VSX1Q9NZR4 RNU4-43P-201ENST00000410628 137 ntBASIC2.26□□□□□ -2.05
VSX1Q9NZR4 RPS4XP11-201ENST00000446897 772 ntBASIC2.26□□□□□ -2.05
VSX1Q9NZR4 Y_RNA.714-201ENST00000517065 90 ntBASIC2.26□□□□□ -2.05
VSX1Q9NZR4 RNU6-1096P-201ENST00000517089 102 ntBASIC2.26□□□□□ -2.05
VSX1Q9NZR4 MIR3169-201ENST00000578032 83 ntBASIC2.26□□□□□ -2.05
VSX1Q9NZR4 AC073413.2-201ENST00000604332 360 ntBASIC2.26□□□□□ -2.05
VSX1Q9NZR4 MIR6840-201ENST00000611937 71 ntBASIC2.26□□□□□ -2.05
VSX1Q9NZR4 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
VSX1Q9NZR4 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.26□□□□□ -2.05
VSX1Q9NZR4 MIR6073-201ENST00000352083 89 ntBASIC2.25□□□□□ -2.05
VSX1Q9NZR4 RNA5SP456-201ENST00000364002 114 ntBASIC2.25□□□□□ -2.05
VSX1Q9NZR4 RNU4-10P-201ENST00000364383 140 ntBASIC2.25□□□□□ -2.05
VSX1Q9NZR4 RNU1-91P-201ENST00000364746 163 ntBASIC2.25□□□□□ -2.05
VSX1Q9NZR4 AL606845.1-201ENST00000404881 255 ntBASIC2.25□□□□□ -2.05
VSX1Q9NZR4 SNORA79-201ENST00000408376 140 ntBASIC2.25□□□□□ -2.05
VSX1Q9NZR4 RNU4-61P-201ENST00000411243 107 ntBASIC2.25□□□□□ -2.05
VSX1Q9NZR4 AC069257.2-201ENST00000441819 155 ntBASIC2.25□□□□□ -2.05
VSX1Q9NZR4 SNORD109B-201ENST00000458961 67 ntBASIC2.25□□□□□ -2.05
VSX1Q9NZR4 SNORD109A-201ENST00000459128 67 ntBASIC2.25□□□□□ -2.05
VSX1Q9NZR4 AL049873.1-201ENST00000480540 376 ntBASIC2.25□□□□□ -2.05
VSX1Q9NZR4 YWHAEP4-201ENST00000505390 198 ntBASIC2.25□□□□□ -2.05
VSX1Q9NZR4 AC107027.2-201ENST00000512197 115 ntBASIC2.25□□□□□ -2.05
VSX1Q9NZR4 RNU6-255P-201ENST00000516957 105 ntBASIC2.25□□□□□ -2.05
VSX1Q9NZR4 AL160236.1-201ENST00000556317 195 ntBASIC2.25□□□□□ -2.05
VSX1Q9NZR4 MIR6079-201ENST00000635807 62 ntBASIC2.25□□□□□ -2.05
VSX1Q9NZR4 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 208.2 ms