Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 AC092991.1-201ENST00000477176 376 ntBASIC1.13□□□□□ -2.23
EXOSC3Q9NQT5 OR9P1P-201ENST00000496431 281 ntBASIC1.13□□□□□ -2.23
EXOSC3Q9NQT5 RNU4-77P-201ENST00000516692 156 ntBASIC1.13□□□□□ -2.23
EXOSC3Q9NQT5 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.13□□□□□ -2.23
EXOSC3Q9NQT5 AL512310.8-201ENST00000550183 120 ntBASIC1.13□□□□□ -2.23
EXOSC3Q9NQT5 MIR5188-201ENST00000583467 113 ntBASIC1.13□□□□□ -2.23
EXOSC3Q9NQT5 AC104984.5-201ENST00000586878 94 ntBASIC1.13□□□□□ -2.23
EXOSC3Q9NQT5 AC091925.1-201ENST00000623204 462 ntBASIC1.13□□□□□ -2.23
EXOSC3Q9NQT5 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.13□□□□□ -2.23
EXOSC3Q9NQT5 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.13□□□□□ -2.23
EXOSC3Q9NQT5 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
EXOSC3Q9NQT5 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.12□□□□□ -2.23
EXOSC3Q9NQT5 Y_RNA.39-201ENST00000362620 98 ntBASIC1.12□□□□□ -2.23
EXOSC3Q9NQT5 RNU4-79P-201ENST00000362764 141 ntBASIC1.12□□□□□ -2.23
EXOSC3Q9NQT5 Y_RNA.172-201ENST00000363765 102 ntBASIC1.12□□□□□ -2.23
EXOSC3Q9NQT5 Y_RNA.361-201ENST00000365515 120 ntBASIC1.12□□□□□ -2.23
EXOSC3Q9NQT5 RNU6-424P-201ENST00000384367 105 ntBASIC1.12□□□□□ -2.23
EXOSC3Q9NQT5 SNORD116-13-201ENST00000384408 92 ntBASIC1.12□□□□□ -2.23
EXOSC3Q9NQT5 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.12□□□□□ -2.23
EXOSC3Q9NQT5 RNU5A-5P-201ENST00000411054 116 ntBASIC1.12□□□□□ -2.23
EXOSC3Q9NQT5 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.12□□□□□ -2.23
EXOSC3Q9NQT5 MTND1P14-201ENST00000427400 950 ntBASIC1.12□□□□□ -2.23
EXOSC3Q9NQT5 RN7SKP179-201ENST00000516126 217 ntBASIC1.12□□□□□ -2.23
EXOSC3Q9NQT5 AC090821.2-201ENST00000523552 176 ntBASIC1.12□□□□□ -2.23
EXOSC3Q9NQT5 AP002004.2-201ENST00000531656 154 ntBASIC1.12□□□□□ -2.23
EXOSC3Q9NQT5 RAB11AP2-201ENST00000545905 639 ntBASIC1.12□□□□□ -2.23
EXOSC3Q9NQT5 PRR13P7-201ENST00000605538 430 ntBASIC1.12□□□□□ -2.23
EXOSC3Q9NQT5 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.12□□□□□ -2.23
EXOSC3Q9NQT5 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.12□□□□□ -2.23
EXOSC3Q9NQT5 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.11□□□□□ -2.23
EXOSC3Q9NQT5 MIR26B-201ENST00000362251 77 ntBASIC1.11□□□□□ -2.23
EXOSC3Q9NQT5 RNU4-76P-201ENST00000364509 141 ntBASIC1.11□□□□□ -2.23
EXOSC3Q9NQT5 Y_RNA.252-201ENST00000364556 101 ntBASIC1.11□□□□□ -2.23
EXOSC3Q9NQT5 MIR520G-201ENST00000385064 90 ntBASIC1.11□□□□□ -2.23
EXOSC3Q9NQT5 Y_RNA.621-201ENST00000411065 96 ntBASIC1.11□□□□□ -2.23
EXOSC3Q9NQT5 AL354751.2-201ENST00000415471 210 ntBASIC1.11□□□□□ -2.23
EXOSC3Q9NQT5 AP1B1P2-201ENST00000416196 106 ntBASIC1.11□□□□□ -2.23
EXOSC3Q9NQT5 MTND4LP11-201ENST00000422184 280 ntBASIC1.11□□□□□ -2.23
EXOSC3Q9NQT5 RNU6-922P-201ENST00000516753 99 ntBASIC1.11□□□□□ -2.23
EXOSC3Q9NQT5 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.11□□□□□ -2.23
EXOSC3Q9NQT5 AP001094.1-201ENST00000579805 193 ntBASIC1.11□□□□□ -2.23
EXOSC3Q9NQT5 AP000942.3-201ENST00000603702 160 ntBASIC1.11□□□□□ -2.23
EXOSC3Q9NQT5 SNORD58B-201ENST00000607313 66 ntBASIC1.11□□□□□ -2.23
EXOSC3Q9NQT5 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.11□□□□□ -2.23
EXOSC3Q9NQT5 AL353770.2-201ENST00000620024 78 ntBASIC1.11□□□□□ -2.23
EXOSC3Q9NQT5 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.11□□□□□ -2.23
EXOSC3Q9NQT5 SNORD114-7-201ENST00000362520 77 ntBASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 RNA5SP99-201ENST00000364020 114 ntBASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 RNU4-41P-201ENST00000364426 143 ntBASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 RNU6-1175P-201ENST00000365200 107 ntBASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 RNU6-1080P-201ENST00000383982 107 ntBASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 Y_RNA.419-201ENST00000384041 102 ntBASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 MIR562-201ENST00000384894 95 ntBASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 MT-TD-201ENST00000387419 68 ntBASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 RPL30P13-201ENST00000418873 348 ntBASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 AL160004.2-201ENST00000432935 350 ntBASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 DYNLT3P2-201ENST00000442517 295 ntBASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 RPS4XP11-201ENST00000446897 772 ntBASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 AL049830.1-201ENST00000468034 425 ntBASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 SNORA70.12-201ENST00000516084 153 ntBASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 RNU6-976P-201ENST00000516086 111 ntBASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 RNU6-436P-201ENST00000516171 114 ntBASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 RNU6-1116P-201ENST00000517269 99 ntBASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 MIR3664-201ENST00000579074 99 ntBASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 AC006157.1-201ENST00000611750 366 ntBASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 AL606534.2-204ENST00000635008 178 ntBASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 AC068647.2-201ENST00000637380 353 ntBASIC1.1□□□□□ -2.23
EXOSC3Q9NQT5 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
EXOSC3Q9NQT5 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
EXOSC3Q9NQT5 RNY1P14-201ENST00000384426 108 ntBASIC1.09□□□□□ -2.23
EXOSC3Q9NQT5 RNU2-61P-201ENST00000411069 191 ntBASIC1.09□□□□□ -2.23
EXOSC3Q9NQT5 BTF3P4-201ENST00000418852 495 ntBASIC1.09□□□□□ -2.23
EXOSC3Q9NQT5 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.09□□□□□ -2.23
EXOSC3Q9NQT5 AL162725.1-201ENST00000435405 301 ntBASIC1.09□□□□□ -2.23
EXOSC3Q9NQT5 Z98949.2-201ENST00000440996 144 ntBASIC1.09□□□□□ -2.23
EXOSC3Q9NQT5 RPL39P38-201ENST00000467018 153 ntBASIC1.09□□□□□ -2.23
EXOSC3Q9NQT5 RNU7-12P-201ENST00000516030 62 ntBASIC1.09□□□□□ -2.23
EXOSC3Q9NQT5 RNU7-28P-201ENST00000516759 62 ntBASIC1.09□□□□□ -2.23
EXOSC3Q9NQT5 RN7SKP88-201ENST00000516847 250 ntBASIC1.09□□□□□ -2.23
EXOSC3Q9NQT5 RN7SKP295-201ENST00000517264 153 ntBASIC1.09□□□□□ -2.23
EXOSC3Q9NQT5 AC022441.3-201ENST00000605737 136 ntBASIC1.09□□□□□ -2.23
EXOSC3Q9NQT5 AL133255.1-201ENST00000606374 441 ntBASIC1.09□□□□□ -2.23
EXOSC3Q9NQT5 7SK.8-201ENST00000612110 250 ntBASIC1.09□□□□□ -2.23
EXOSC3Q9NQT5 7SK.11-201ENST00000615477 250 ntBASIC1.09□□□□□ -2.23
EXOSC3Q9NQT5 AC007485.1-201ENST00000616755 206 ntBASIC1.09□□□□□ -2.23
EXOSC3Q9NQT5 7SK.13-201ENST00000622040 250 ntBASIC1.09□□□□□ -2.23
EXOSC3Q9NQT5 MIRLET7C-201ENST00000362160 84 ntBASIC1.08□□□□□ -2.24
EXOSC3Q9NQT5 MIR378A-201ENST00000362177 66 ntBASIC1.08□□□□□ -2.24
EXOSC3Q9NQT5 RNU6-199P-201ENST00000362954 107 ntBASIC1.08□□□□□ -2.24
EXOSC3Q9NQT5 Y_RNA.230-201ENST00000364348 109 ntBASIC1.08□□□□□ -2.24
EXOSC3Q9NQT5 Y_RNA.329-201ENST00000365209 107 ntBASIC1.08□□□□□ -2.24
EXOSC3Q9NQT5 RNU1-115P-201ENST00000365329 160 ntBASIC1.08□□□□□ -2.24
EXOSC3Q9NQT5 SNORD26-201ENST00000384147 75 ntBASIC1.08□□□□□ -2.24
EXOSC3Q9NQT5 Y_RNA.570-201ENST00000384750 101 ntBASIC1.08□□□□□ -2.24
EXOSC3Q9NQT5 RNA5SP482-201ENST00000391269 118 ntBASIC1.08□□□□□ -2.24
EXOSC3Q9NQT5 HSPE1P13-201ENST00000451143 297 ntBASIC1.08□□□□□ -2.24
EXOSC3Q9NQT5 RPL30P7-201ENST00000479312 323 ntBASIC1.08□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 140.5 ms