Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.6□□□□□ -1.99
TRIM39Q9HCM9 AC100821.1-201ENST00000523153 2479 ntBASIC2.6□□□□□ -1.99
TRIM39Q9HCM9 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
TRIM39Q9HCM9 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
TRIM39Q9HCM9 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
TRIM39Q9HCM9 RNU4-10P-201ENST00000364383 140 ntBASIC2.59□□□□□ -1.99
TRIM39Q9HCM9 RNA5SP496-201ENST00000391240 109 ntBASIC2.59□□□□□ -1.99
TRIM39Q9HCM9 AC023449.1-201ENST00000454464 154 ntBASIC2.59□□□□□ -1.99
TRIM39Q9HCM9 AC233266.1-201ENST00000454518 96 ntBASIC2.59□□□□□ -1.99
TRIM39Q9HCM9 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.59□□□□□ -1.99
TRIM39Q9HCM9 AC091021.1-201ENST00000468051 388 ntBASIC2.59□□□□□ -1.99
TRIM39Q9HCM9 RNU6-341P-201ENST00000516973 96 ntBASIC2.59□□□□□ -1.99
TRIM39Q9HCM9 AL358944.1-201ENST00000528537 144 ntBASIC2.59□□□□□ -1.99
TRIM39Q9HCM9 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.59□□□□□ -1.99
TRIM39Q9HCM9 MIR4446-201ENST00000578505 67 ntBASIC2.59□□□□□ -1.99
TRIM39Q9HCM9 RPL12P50-201ENST00000603116 116 ntBASIC2.59□□□□□ -1.99
TRIM39Q9HCM9 AC242852.1-201ENST00000612151 96 ntBASIC2.59□□□□□ -1.99
TRIM39Q9HCM9 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.59□□□□□ -1.99
TRIM39Q9HCM9 AC244015.1-201ENST00000622301 99 ntBASIC2.59□□□□□ -1.99
TRIM39Q9HCM9 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -2
TRIM39Q9HCM9 RNA5SP393-201ENST00000363423 117 ntBASIC2.58□□□□□ -2
TRIM39Q9HCM9 RNU6-1019P-201ENST00000364424 107 ntBASIC2.58□□□□□ -2
TRIM39Q9HCM9 RNU4-41P-201ENST00000364426 143 ntBASIC2.58□□□□□ -2
TRIM39Q9HCM9 Y_RNA.267-201ENST00000364679 109 ntBASIC2.58□□□□□ -2
TRIM39Q9HCM9 MIR597-201ENST00000384968 97 ntBASIC2.58□□□□□ -2
TRIM39Q9HCM9 RNU6-381P-201ENST00000391259 108 ntBASIC2.58□□□□□ -2
TRIM39Q9HCM9 MIR548I3-201ENST00000408378 149 ntBASIC2.58□□□□□ -2
TRIM39Q9HCM9 MIR548I1-201ENST00000408810 149 ntBASIC2.58□□□□□ -2
TRIM39Q9HCM9 AC007064.1-201ENST00000412238 351 ntBASIC2.58□□□□□ -2
TRIM39Q9HCM9 AC099677.2-201ENST00000436385 175 ntBASIC2.58□□□□□ -2
TRIM39Q9HCM9 AL163195.1-201ENST00000496941 348 ntBASIC2.58□□□□□ -2
TRIM39Q9HCM9 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.58□□□□□ -2
TRIM39Q9HCM9 MIR4529-201ENST00000578110 78 ntBASIC2.58□□□□□ -2
TRIM39Q9HCM9 AC078899.2-201ENST00000595282 212 ntBASIC2.58□□□□□ -2
TRIM39Q9HCM9 MIR6852-201ENST00000621699 66 ntBASIC2.58□□□□□ -2
TRIM39Q9HCM9 AC010297.1-201ENST00000623948 149 ntBASIC2.58□□□□□ -2
TRIM39Q9HCM9 U6.108-201ENST00000637764 58 ntBASIC2.58□□□□□ -2
TRIM39Q9HCM9 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.57□□□□□ -2
TRIM39Q9HCM9 SNORA33-201ENST00000363664 130 ntBASIC2.57□□□□□ -2
TRIM39Q9HCM9 Y_RNA.203-201ENST00000364106 102 ntBASIC2.57□□□□□ -2
TRIM39Q9HCM9 SNORA25.6-201ENST00000364121 118 ntBASIC2.57□□□□□ -2
TRIM39Q9HCM9 RNU1-51P-201ENST00000365345 176 ntBASIC2.57□□□□□ -2
TRIM39Q9HCM9 MIR524-201ENST00000385242 87 ntBASIC2.57□□□□□ -2
TRIM39Q9HCM9 MIR616-201ENST00000385293 97 ntBASIC2.57□□□□□ -2
TRIM39Q9HCM9 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.57□□□□□ -2
TRIM39Q9HCM9 RNU2-2P-201ENST00000410396 191 ntBASIC2.57□□□□□ -2
TRIM39Q9HCM9 SUMO1P4-201ENST00000429430 302 ntBASIC2.57□□□□□ -2
TRIM39Q9HCM9 HMGN2P3-201ENST00000433603 273 ntBASIC2.57□□□□□ -2
TRIM39Q9HCM9 HMGN2P5-201ENST00000436882 273 ntBASIC2.57□□□□□ -2
TRIM39Q9HCM9 Y_RNA.797-201ENST00000515977 94 ntBASIC2.57□□□□□ -2
TRIM39Q9HCM9 RNU6-861P-201ENST00000516745 106 ntBASIC2.57□□□□□ -2
TRIM39Q9HCM9 AC091178.2-201ENST00000584401 117 ntBASIC2.57□□□□□ -2
TRIM39Q9HCM9 RNU2-4P-201ENST00000606190 192 ntBASIC2.57□□□□□ -2
TRIM39Q9HCM9 AL391903.3-201ENST00000612158 163 ntBASIC2.57□□□□□ -2
TRIM39Q9HCM9 U1.36-201ENST00000620684 176 ntBASIC2.57□□□□□ -2
TRIM39Q9HCM9 U6.106-201ENST00000636360 105 ntBASIC2.57□□□□□ -2
TRIM39Q9HCM9 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
TRIM39Q9HCM9 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
TRIM39Q9HCM9 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.56□□□□□ -2
TRIM39Q9HCM9 Y_RNA.150-201ENST00000363562 102 ntBASIC2.56□□□□□ -2
TRIM39Q9HCM9 RNA5SP68-201ENST00000363885 119 ntBASIC2.56□□□□□ -2
TRIM39Q9HCM9 RNU6-886P-201ENST00000384319 105 ntBASIC2.56□□□□□ -2
TRIM39Q9HCM9 MIR1283-2-201ENST00000408621 87 ntBASIC2.56□□□□□ -2
TRIM39Q9HCM9 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.56□□□□□ -2
TRIM39Q9HCM9 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.56□□□□□ -2
TRIM39Q9HCM9 AC022559.1-201ENST00000520905 205 ntBASIC2.56□□□□□ -2
TRIM39Q9HCM9 AP002004.2-201ENST00000531656 154 ntBASIC2.56□□□□□ -2
TRIM39Q9HCM9 MIR5094-201ENST00000578766 85 ntBASIC2.56□□□□□ -2
TRIM39Q9HCM9 MIR4744-201ENST00000581563 82 ntBASIC2.56□□□□□ -2
TRIM39Q9HCM9 JPX_2.1-201ENST00000614161 69 ntBASIC2.56□□□□□ -2
TRIM39Q9HCM9 FO624990.1-201ENST00000636373 85 ntBASIC2.56□□□□□ -2
TRIM39Q9HCM9 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
TRIM39Q9HCM9 AC080100.1-201ENST00000624239 5356 ntBASIC2.55□□□□□ -2
TRIM39Q9HCM9 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
TRIM39Q9HCM9 RNU6-682P-201ENST00000363843 106 ntBASIC2.55□□□□□ -2
TRIM39Q9HCM9 Y_RNA.180-201ENST00000363867 113 ntBASIC2.55□□□□□ -2
TRIM39Q9HCM9 Y_RNA.182-201ENST00000363880 111 ntBASIC2.55□□□□□ -2
TRIM39Q9HCM9 RNU6-383P-201ENST00000410864 94 ntBASIC2.55□□□□□ -2
TRIM39Q9HCM9 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.55□□□□□ -2
TRIM39Q9HCM9 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.55□□□□□ -2
TRIM39Q9HCM9 RNU6-1007P-201ENST00000516586 107 ntBASIC2.55□□□□□ -2
TRIM39Q9HCM9 RNU6-1291P-201ENST00000516591 104 ntBASIC2.55□□□□□ -2
TRIM39Q9HCM9 RNU2-56P-201ENST00000516826 190 ntBASIC2.55□□□□□ -2
TRIM39Q9HCM9 RNU1-104P-201ENST00000517280 175 ntBASIC2.55□□□□□ -2
TRIM39Q9HCM9 MIR5194-201ENST00000582634 120 ntBASIC2.55□□□□□ -2
TRIM39Q9HCM9 AL929325.1-201ENST00000603096 117 ntBASIC2.55□□□□□ -2
TRIM39Q9HCM9 AL049779.4-201ENST00000604500 156 ntBASIC2.55□□□□□ -2
TRIM39Q9HCM9 AC022513.1-201ENST00000624512 117 ntBASIC2.55□□□□□ -2
TRIM39Q9HCM9 AL136360.1-201ENST00000503377 1900 ntBASIC2.54□□□□□ -2
TRIM39Q9HCM9 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
TRIM39Q9HCM9 SNORA3A-201ENST00000364113 130 ntBASIC2.54□□□□□ -2
TRIM39Q9HCM9 Y_RNA.229-201ENST00000364347 113 ntBASIC2.54□□□□□ -2
TRIM39Q9HCM9 Y_RNA.240-201ENST00000364469 95 ntBASIC2.54□□□□□ -2
TRIM39Q9HCM9 RNY3P5-201ENST00000384127 102 ntBASIC2.54□□□□□ -2
TRIM39Q9HCM9 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.54□□□□□ -2
TRIM39Q9HCM9 TRBV12-1-201ENST00000479785 344 ntBASIC2.54□□□□□ -2
TRIM39Q9HCM9 Y_RNA.714-201ENST00000517065 90 ntBASIC2.54□□□□□ -2
TRIM39Q9HCM9 MIR4672-201ENST00000583126 81 ntBASIC2.54□□□□□ -2
TRIM39Q9HCM9 MIR6817-201ENST00000615588 66 ntBASIC2.54□□□□□ -2
TRIM39Q9HCM9 AC068700.1-201ENST00000565862 3754 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms