Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 MRPS10P1-201ENST00000448483 130 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 snoU13.27-201ENST00000459278 104 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 RNU7-94P-201ENST00000459576 63 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 AC025465.3-201ENST00000510570 311 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 SNORA25.10-201ENST00000515926 124 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 SNORA40.14-201ENST00000516543 86 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 RNA5SP437-201ENST00000517249 129 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 RN7SKP295-201ENST00000517264 153 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 RNU6-988P-201ENST00000519081 107 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 MIR3660-201ENST00000584845 100 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 FAM106DP-201ENST00000586416 501 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 AC022140.2-201ENST00000623500 188 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 AC134503.1-201ENST00000633048 54 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 AC091812.1-201ENST00000432235 1948 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 AC100821.1-201ENST00000523153 2479 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 Y_RNA.11-201ENST00000362375 109 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 RNU6-454P-201ENST00000364292 107 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 RNU6-136P-201ENST00000384663 107 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 MIR30A-201ENST00000385092 71 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 MIR548P-201ENST00000408336 84 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 SDAD1P3-201ENST00000427380 333 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 MTCYBP6-201ENST00000441810 138 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 RPS26P45-201ENST00000471748 340 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 RPL26P26-201ENST00000480251 434 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 RNU6-155P-201ENST00000516347 100 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 AC022254.1-201ENST00000567857 235 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 AL390123.1-201ENST00000603216 237 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 AC073413.2-201ENST00000604332 360 ntBASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.66□□□□□ -2.14
ZNF541Q9H0D2 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.65□□□□□ -2.15
ZNF541Q9H0D2 MIR410-201ENST00000362222 80 ntBASIC1.65□□□□□ -2.15
ZNF541Q9H0D2 U8.1-201ENST00000362843 134 ntBASIC1.65□□□□□ -2.15
ZNF541Q9H0D2 Y_RNA.205-201ENST00000364128 113 ntBASIC1.65□□□□□ -2.15
ZNF541Q9H0D2 SNORA63D-201ENST00000364359 132 ntBASIC1.65□□□□□ -2.15
ZNF541Q9H0D2 SNORA22B-201ENST00000383876 138 ntBASIC1.65□□□□□ -2.15
ZNF541Q9H0D2 MRPL35P1-201ENST00000404272 572 ntBASIC1.65□□□□□ -2.15
ZNF541Q9H0D2 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.65□□□□□ -2.15
ZNF541Q9H0D2 SNRPGP13-201ENST00000442212 177 ntBASIC1.65□□□□□ -2.15
ZNF541Q9H0D2 SUMO1P2-201ENST00000452524 304 ntBASIC1.65□□□□□ -2.15
ZNF541Q9H0D2 snoU13.9-201ENST00000458927 103 ntBASIC1.65□□□□□ -2.15
ZNF541Q9H0D2 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.65□□□□□ -2.15
ZNF541Q9H0D2 SNORA70.12-201ENST00000516084 153 ntBASIC1.65□□□□□ -2.15
ZNF541Q9H0D2 RNU6-1278P-201ENST00000516130 107 ntBASIC1.65□□□□□ -2.15
ZNF541Q9H0D2 Y_RNA.711-201ENST00000516993 102 ntBASIC1.65□□□□□ -2.15
ZNF541Q9H0D2 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
ZNF541Q9H0D2 MIR151B-201ENST00000584249 96 ntBASIC1.65□□□□□ -2.15
ZNF541Q9H0D2 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.65□□□□□ -2.15
ZNF541Q9H0D2 AC127459.3-201ENST00000624328 466 ntBASIC1.65□□□□□ -2.15
ZNF541Q9H0D2 AC005592.1-201ENST00000566527 1640 ntBASIC1.64□□□□□ -2.15
ZNF541Q9H0D2 Y_RNA.28-201ENST00000362554 111 ntBASIC1.64□□□□□ -2.15
ZNF541Q9H0D2 SNORA27.1-201ENST00000362604 124 ntBASIC1.64□□□□□ -2.15
ZNF541Q9H0D2 RNU4-50P-201ENST00000364361 141 ntBASIC1.64□□□□□ -2.15
ZNF541Q9H0D2 RNU4-76P-201ENST00000364509 141 ntBASIC1.64□□□□□ -2.15
ZNF541Q9H0D2 Y_RNA.439-201ENST00000384119 94 ntBASIC1.64□□□□□ -2.15
ZNF541Q9H0D2 Y_RNA.471-201ENST00000384312 102 ntBASIC1.64□□□□□ -2.15
ZNF541Q9H0D2 Y_RNA.645-201ENST00000391229 102 ntBASIC1.64□□□□□ -2.15
ZNF541Q9H0D2 RN7SKP200-201ENST00000410564 320 ntBASIC1.64□□□□□ -2.15
ZNF541Q9H0D2 AC245047.3-201ENST00000429428 127 ntBASIC1.64□□□□□ -2.15
ZNF541Q9H0D2 U8.20-201ENST00000459445 131 ntBASIC1.64□□□□□ -2.15
ZNF541Q9H0D2 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.64□□□□□ -2.15
ZNF541Q9H0D2 AC040926.1-201ENST00000530195 238 ntBASIC1.64□□□□□ -2.15
ZNF541Q9H0D2 AC055872.1-201ENST00000570978 278 ntBASIC1.64□□□□□ -2.15
ZNF541Q9H0D2 MIR3171-201ENST00000584270 74 ntBASIC1.64□□□□□ -2.15
ZNF541Q9H0D2 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.64□□□□□ -2.15
ZNF541Q9H0D2 AC044792.1-201ENST00000593294 196 ntBASIC1.64□□□□□ -2.15
ZNF541Q9H0D2 AC103810.8-201ENST00000607347 118 ntBASIC1.64□□□□□ -2.15
ZNF541Q9H0D2 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.64□□□□□ -2.15
ZNF541Q9H0D2 RNU6-694P-201ENST00000364071 147 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 Y_RNA.267-201ENST00000364679 109 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 SNORA4.2-201ENST00000365313 147 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 SNORA40.6-201ENST00000391153 128 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 MIR873-201ENST00000401120 77 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 MRPL42P3-201ENST00000401492 326 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 MIR1302-11-201ENST00000408051 138 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 MIR1302-9-201ENST00000408365 138 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 MIR1302-10-201ENST00000408734 138 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 RNU5A-5P-201ENST00000411054 116 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 POLR2J4-204ENST00000418424 324 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 AC233266.1-201ENST00000454518 96 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 AC097462.1-201ENST00000514125 324 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 Y_RNA.713-201ENST00000517013 96 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 AC124312.5-201ENST00000604451 268 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 AL121655.1-201ENST00000605811 308 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 MIR1302-2-201ENST00000607096 138 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 AC242852.1-201ENST00000612151 96 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 MIR6788-201ENST00000618842 66 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 MIR8063-201ENST00000621930 81 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 AC244015.1-201ENST00000622301 99 ntBASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.63□□□□□ -2.15
ZNF541Q9H0D2 Y_RNA.101-201ENST00000363154 102 ntBASIC1.62□□□□□ -2.15
ZNF541Q9H0D2 Y_RNA.389-201ENST00000383924 113 ntBASIC1.62□□□□□ -2.15
ZNF541Q9H0D2 MIR548J-201ENST00000408833 112 ntBASIC1.62□□□□□ -2.15
ZNF541Q9H0D2 RNU2-54P-201ENST00000410299 190 ntBASIC1.62□□□□□ -2.15
ZNF541Q9H0D2 HSPE1P24-201ENST00000450782 238 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms