Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 Y_RNA.7-201ENST00000362352 102 ntBASIC3.15□□□□□ -1.91
TRAIPQ9BWF2 SNORA1B-201ENST00000362535 133 ntBASIC3.15□□□□□ -1.91
TRAIPQ9BWF2 RNU6-103P-201ENST00000363686 107 ntBASIC3.15□□□□□ -1.91
TRAIPQ9BWF2 RPL39P40-201ENST00000445481 146 ntBASIC3.15□□□□□ -1.91
TRAIPQ9BWF2 HMGN1P7-201ENST00000491722 313 ntBASIC3.15□□□□□ -1.91
TRAIPQ9BWF2 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
TRAIPQ9BWF2 MIR4446-201ENST00000578505 67 ntBASIC3.15□□□□□ -1.91
TRAIPQ9BWF2 MIR4287-201ENST00000579398 78 ntBASIC3.15□□□□□ -1.91
TRAIPQ9BWF2 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
TRAIPQ9BWF2 RNU1-138P-201ENST00000384093 164 ntBASIC3.14□□□□□ -1.91
TRAIPQ9BWF2 RNU6-440P-201ENST00000390882 105 ntBASIC3.14□□□□□ -1.91
TRAIPQ9BWF2 RNA5SP482-201ENST00000391269 118 ntBASIC3.14□□□□□ -1.91
TRAIPQ9BWF2 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC3.14□□□□□ -1.91
TRAIPQ9BWF2 RPL23AP94-201ENST00000512518 302 ntBASIC3.14□□□□□ -1.91
TRAIPQ9BWF2 AC091544.4-201ENST00000555268 342 ntBASIC3.14□□□□□ -1.91
TRAIPQ9BWF2 AC072026.1-201ENST00000605023 201 ntBASIC3.14□□□□□ -1.91
TRAIPQ9BWF2 MIR8054-201ENST00000620877 86 ntBASIC3.14□□□□□ -1.91
TRAIPQ9BWF2 AC062016.1-201ENST00000355719 319 ntBASIC3.13□□□□□ -1.91
TRAIPQ9BWF2 RNU6-112P-201ENST00000363599 104 ntBASIC3.13□□□□□ -1.91
TRAIPQ9BWF2 SNORA63D-201ENST00000364359 132 ntBASIC3.13□□□□□ -1.91
TRAIPQ9BWF2 AL034345.1-201ENST00000407768 123 ntBASIC3.13□□□□□ -1.91
TRAIPQ9BWF2 RNA5SP184-201ENST00000411071 108 ntBASIC3.13□□□□□ -1.91
TRAIPQ9BWF2 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.13□□□□□ -1.91
TRAIPQ9BWF2 CBX3P4-201ENST00000538909 354 ntBASIC3.13□□□□□ -1.91
TRAIPQ9BWF2 RPL23AP91-201ENST00000569211 455 ntBASIC3.13□□□□□ -1.91
TRAIPQ9BWF2 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
TRAIPQ9BWF2 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.12□□□□□ -1.91
TRAIPQ9BWF2 MIR126-201ENST00000362291 85 ntBASIC3.12□□□□□ -1.91
TRAIPQ9BWF2 RNA5SP276-201ENST00000362580 94 ntBASIC3.12□□□□□ -1.91
TRAIPQ9BWF2 MIR9-1-201ENST00000385198 89 ntBASIC3.12□□□□□ -1.91
TRAIPQ9BWF2 RNU6-907P-201ENST00000390924 102 ntBASIC3.12□□□□□ -1.91
TRAIPQ9BWF2 RNA5SP212-201ENST00000391223 107 ntBASIC3.12□□□□□ -1.91
TRAIPQ9BWF2 MLLT10P1-201ENST00000418346 262 ntBASIC3.12□□□□□ -1.91
TRAIPQ9BWF2 AL158823.1-201ENST00000418441 478 ntBASIC3.12□□□□□ -1.91
TRAIPQ9BWF2 AC087499.2-201ENST00000432861 149 ntBASIC3.12□□□□□ -1.91
TRAIPQ9BWF2 AC004792.1-201ENST00000614523 137 ntBASIC3.12□□□□□ -1.91
TRAIPQ9BWF2 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
TRAIPQ9BWF2 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
TRAIPQ9BWF2 SNORD68-201ENST00000363214 84 ntBASIC3.11□□□□□ -1.91
TRAIPQ9BWF2 Y_RNA.121-201ENST00000363309 113 ntBASIC3.11□□□□□ -1.91
TRAIPQ9BWF2 Y_RNA.242-201ENST00000364473 110 ntBASIC3.11□□□□□ -1.91
TRAIPQ9BWF2 SNORA6-201ENST00000384033 151 ntBASIC3.11□□□□□ -1.91
TRAIPQ9BWF2 MIR616-201ENST00000385293 97 ntBASIC3.11□□□□□ -1.91
TRAIPQ9BWF2 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC3.11□□□□□ -1.91
TRAIPQ9BWF2 PIGPP3-201ENST00000425307 415 ntBASIC3.11□□□□□ -1.91
TRAIPQ9BWF2 SNRPGP10-201ENST00000432323 225 ntBASIC3.11□□□□□ -1.91
TRAIPQ9BWF2 STAG3L5P-204ENST00000443759 179 ntBASIC3.11□□□□□ -1.91
TRAIPQ9BWF2 RPL23AP63-201ENST00000498752 471 ntBASIC3.11□□□□□ -1.91
TRAIPQ9BWF2 Y_RNA.797-201ENST00000515977 94 ntBASIC3.11□□□□□ -1.91
TRAIPQ9BWF2 MIR4319-201ENST00000577285 85 ntBASIC3.11□□□□□ -1.91
TRAIPQ9BWF2 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
TRAIPQ9BWF2 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
TRAIPQ9BWF2 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.11□□□□□ -1.91
TRAIPQ9BWF2 RNU6-1209P-201ENST00000363655 107 ntBASIC3.1□□□□□ -1.91
TRAIPQ9BWF2 Y_RNA.238-201ENST00000364441 102 ntBASIC3.1□□□□□ -1.91
TRAIPQ9BWF2 Y_RNA.571-201ENST00000384753 98 ntBASIC3.1□□□□□ -1.91
TRAIPQ9BWF2 RNU6-381P-201ENST00000391259 108 ntBASIC3.1□□□□□ -1.91
TRAIPQ9BWF2 AL606517.2-201ENST00000442855 241 ntBASIC3.1□□□□□ -1.91
TRAIPQ9BWF2 RPS27P1-201ENST00000450552 247 ntBASIC3.1□□□□□ -1.91
TRAIPQ9BWF2 RNU7-34P-201ENST00000459394 64 ntBASIC3.1□□□□□ -1.91
TRAIPQ9BWF2 AC079600.2-201ENST00000550076 130 ntBASIC3.1□□□□□ -1.91
TRAIPQ9BWF2 MIR4709-201ENST00000577272 72 ntBASIC3.1□□□□□ -1.91
TRAIPQ9BWF2 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
TRAIPQ9BWF2 AC009487.2-201ENST00000420969 6821 ntBASIC3.09□□□□□ -1.91
TRAIPQ9BWF2 Y_RNA.229-201ENST00000364347 113 ntBASIC3.09□□□□□ -1.91
TRAIPQ9BWF2 Y_RNA.270-201ENST00000364693 104 ntBASIC3.09□□□□□ -1.91
TRAIPQ9BWF2 MIR802-201ENST00000390235 94 ntBASIC3.09□□□□□ -1.91
TRAIPQ9BWF2 RNU6-131P-201ENST00000391144 107 ntBASIC3.09□□□□□ -1.91
TRAIPQ9BWF2 RNU2-2P-201ENST00000410396 191 ntBASIC3.09□□□□□ -1.91
TRAIPQ9BWF2 AC245047.8-201ENST00000456455 284 ntBASIC3.09□□□□□ -1.91
TRAIPQ9BWF2 RNU2-4P-201ENST00000606190 192 ntBASIC3.09□□□□□ -1.91
TRAIPQ9BWF2 AC098479.1-201ENST00000609225 154 ntBASIC3.09□□□□□ -1.91
TRAIPQ9BWF2 AL391903.3-201ENST00000612158 163 ntBASIC3.09□□□□□ -1.91
TRAIPQ9BWF2 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
TRAIPQ9BWF2 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
TRAIPQ9BWF2 Y_RNA.253-201ENST00000364562 112 ntBASIC3.08□□□□□ -1.92
TRAIPQ9BWF2 AL451074.5-201ENST00000415894 435 ntBASIC3.08□□□□□ -1.92
TRAIPQ9BWF2 FTH1P12-201ENST00000432137 551 ntBASIC3.08□□□□□ -1.92
TRAIPQ9BWF2 AC108938.1-201ENST00000451204 136 ntBASIC3.08□□□□□ -1.92
TRAIPQ9BWF2 snoU13.27-201ENST00000459278 104 ntBASIC3.08□□□□□ -1.92
TRAIPQ9BWF2 MIR4308-201ENST00000580634 81 ntBASIC3.08□□□□□ -1.92
TRAIPQ9BWF2 MIR4744-201ENST00000581563 82 ntBASIC3.08□□□□□ -1.92
TRAIPQ9BWF2 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.08□□□□□ -1.92
TRAIPQ9BWF2 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.08□□□□□ -1.92
TRAIPQ9BWF2 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
TRAIPQ9BWF2 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
TRAIPQ9BWF2 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.08□□□□□ -1.92
TRAIPQ9BWF2 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
TRAIPQ9BWF2 AC007336.1-201ENST00000576365 3828 ntBASIC3.07□□□□□ -1.92
TRAIPQ9BWF2 Y_RNA.182-201ENST00000363880 111 ntBASIC3.07□□□□□ -1.92
TRAIPQ9BWF2 Y_RNA.233-201ENST00000364407 101 ntBASIC3.07□□□□□ -1.92
TRAIPQ9BWF2 RNU6-47P-201ENST00000383866 107 ntBASIC3.07□□□□□ -1.92
TRAIPQ9BWF2 Y_RNA.435-201ENST00000384095 112 ntBASIC3.07□□□□□ -1.92
TRAIPQ9BWF2 RNY3P5-201ENST00000384127 102 ntBASIC3.07□□□□□ -1.92
TRAIPQ9BWF2 RNU6-1228P-201ENST00000391014 107 ntBASIC3.07□□□□□ -1.92
TRAIPQ9BWF2 RNU6-918P-201ENST00000391219 106 ntBASIC3.07□□□□□ -1.92
TRAIPQ9BWF2 MIR1278-201ENST00000408753 81 ntBASIC3.07□□□□□ -1.92
TRAIPQ9BWF2 RNA5SP100-201ENST00000410903 110 ntBASIC3.07□□□□□ -1.92
TRAIPQ9BWF2 RNA5SP59-201ENST00000410922 110 ntBASIC3.07□□□□□ -1.92
TRAIPQ9BWF2 HSPE1P9-201ENST00000440046 311 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 137.4 ms