Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC091178.2-201ENST00000584401 117 ntBASIC1.52□□□□□ -2.17
CCDC3Q9BQI4 AC044792.1-201ENST00000593294 196 ntBASIC1.52□□□□□ -2.17
CCDC3Q9BQI4 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC3Q9BQI4 AC245060.5-201ENST00000610778 3293 ntBASIC1.52□□□□□ -2.17
CCDC3Q9BQI4 AL391987.6-201ENST00000305671 199 ntBASIC1.51□□□□□ -2.17
CCDC3Q9BQI4 RNU6-414P-201ENST00000363705 104 ntBASIC1.51□□□□□ -2.17
CCDC3Q9BQI4 Y_RNA.183-201ENST00000363882 113 ntBASIC1.51□□□□□ -2.17
CCDC3Q9BQI4 RNU6-1175P-201ENST00000365200 107 ntBASIC1.51□□□□□ -2.17
CCDC3Q9BQI4 MIR194-1-201ENST00000384892 85 ntBASIC1.51□□□□□ -2.17
CCDC3Q9BQI4 MIR934-201ENST00000401241 83 ntBASIC1.51□□□□□ -2.17
CCDC3Q9BQI4 RN7SKP200-201ENST00000410564 320 ntBASIC1.51□□□□□ -2.17
CCDC3Q9BQI4 MIR4285-201ENST00000581001 85 ntBASIC1.51□□□□□ -2.17
CCDC3Q9BQI4 AC124312.5-201ENST00000604451 268 ntBASIC1.51□□□□□ -2.17
CCDC3Q9BQI4 AC016925.2-201ENST00000605108 242 ntBASIC1.51□□□□□ -2.17
CCDC3Q9BQI4 MIR8070-201ENST00000616510 88 ntBASIC1.51□□□□□ -2.17
CCDC3Q9BQI4 MIR8054-201ENST00000620877 86 ntBASIC1.51□□□□□ -2.17
CCDC3Q9BQI4 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.51□□□□□ -2.17
CCDC3Q9BQI4 MIR6079-201ENST00000635807 62 ntBASIC1.51□□□□□ -2.17
CCDC3Q9BQI4 RNU6-407P-201ENST00000365280 104 ntBASIC1.5□□□□□ -2.17
CCDC3Q9BQI4 MIR520G-201ENST00000385064 90 ntBASIC1.5□□□□□ -2.17
CCDC3Q9BQI4 MIR517C-201ENST00000385103 95 ntBASIC1.5□□□□□ -2.17
CCDC3Q9BQI4 RNA5SP109-201ENST00000391010 116 ntBASIC1.5□□□□□ -2.17
CCDC3Q9BQI4 RNU6-710P-201ENST00000410424 105 ntBASIC1.5□□□□□ -2.17
CCDC3Q9BQI4 COX6CP10-201ENST00000416832 224 ntBASIC1.5□□□□□ -2.17
CCDC3Q9BQI4 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC3Q9BQI4 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.5□□□□□ -2.17
CCDC3Q9BQI4 AL606517.2-201ENST00000442855 241 ntBASIC1.5□□□□□ -2.17
CCDC3Q9BQI4 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.5□□□□□ -2.17
CCDC3Q9BQI4 RNU1-92P-201ENST00000517017 135 ntBASIC1.5□□□□□ -2.17
CCDC3Q9BQI4 MIR4709-201ENST00000577272 72 ntBASIC1.5□□□□□ -2.17
CCDC3Q9BQI4 AC073413.2-201ENST00000604332 360 ntBASIC1.5□□□□□ -2.17
CCDC3Q9BQI4 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC3Q9BQI4 AL021879.1-201ENST00000611756 288 ntBASIC1.5□□□□□ -2.17
CCDC3Q9BQI4 PART1_1.1-201ENST00000611761 217 ntBASIC1.5□□□□□ -2.17
CCDC3Q9BQI4 AP000648.3-201ENST00000623539 4507 ntBASIC1.5□□□□□ -2.17
CCDC3Q9BQI4 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
CCDC3Q9BQI4 MIR424-201ENST00000362227 98 ntBASIC1.49□□□□□ -2.17
CCDC3Q9BQI4 Y_RNA.124-201ENST00000363339 93 ntBASIC1.49□□□□□ -2.17
CCDC3Q9BQI4 Y_RNA.327-201ENST00000365201 102 ntBASIC1.49□□□□□ -2.17
CCDC3Q9BQI4 RNU6-439P-201ENST00000384188 106 ntBASIC1.49□□□□□ -2.17
CCDC3Q9BQI4 RNU6-505P-201ENST00000384427 107 ntBASIC1.49□□□□□ -2.17
CCDC3Q9BQI4 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.49□□□□□ -2.17
CCDC3Q9BQI4 MIR1323-201ENST00000408090 73 ntBASIC1.49□□□□□ -2.17
CCDC3Q9BQI4 RNU6-101P-201ENST00000410323 104 ntBASIC1.49□□□□□ -2.17
CCDC3Q9BQI4 RNU6-130P-201ENST00000411112 103 ntBASIC1.49□□□□□ -2.17
CCDC3Q9BQI4 MTND1P14-201ENST00000427400 950 ntBASIC1.49□□□□□ -2.17
CCDC3Q9BQI4 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.49□□□□□ -2.17
CCDC3Q9BQI4 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.49□□□□□ -2.17
CCDC3Q9BQI4 RNU6-155P-201ENST00000516347 100 ntBASIC1.49□□□□□ -2.17
CCDC3Q9BQI4 SNORA31.10-201ENST00000516482 106 ntBASIC1.49□□□□□ -2.17
CCDC3Q9BQI4 RNU7-28P-201ENST00000516759 62 ntBASIC1.49□□□□□ -2.17
CCDC3Q9BQI4 SNORA31.24-201ENST00000517232 57 ntBASIC1.49□□□□□ -2.17
CCDC3Q9BQI4 AC027419.1-201ENST00000522976 328 ntBASIC1.49□□□□□ -2.17
CCDC3Q9BQI4 AL355297.3-201ENST00000604082 446 ntBASIC1.49□□□□□ -2.17
CCDC3Q9BQI4 AC011373.1-201ENST00000607270 237 ntBASIC1.49□□□□□ -2.17
CCDC3Q9BQI4 AC040896.1-201ENST00000613819 479 ntBASIC1.49□□□□□ -2.17
CCDC3Q9BQI4 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.49□□□□□ -2.17
CCDC3Q9BQI4 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
CCDC3Q9BQI4 MIR126-201ENST00000362291 85 ntBASIC1.48□□□□□ -2.17
CCDC3Q9BQI4 RNU6-1123P-201ENST00000362347 106 ntBASIC1.48□□□□□ -2.17
CCDC3Q9BQI4 RNU6-338P-201ENST00000383888 105 ntBASIC1.48□□□□□ -2.17
CCDC3Q9BQI4 Y_RNA.422-201ENST00000384054 114 ntBASIC1.48□□□□□ -2.17
CCDC3Q9BQI4 Y_RNA.455-201ENST00000384230 98 ntBASIC1.48□□□□□ -2.17
CCDC3Q9BQI4 RNU6-1031P-201ENST00000384773 107 ntBASIC1.48□□□□□ -2.17
CCDC3Q9BQI4 RNU6-440P-201ENST00000390882 105 ntBASIC1.48□□□□□ -2.17
CCDC3Q9BQI4 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.48□□□□□ -2.17
CCDC3Q9BQI4 AC245047.3-201ENST00000429428 127 ntBASIC1.48□□□□□ -2.17
CCDC3Q9BQI4 AL162725.1-201ENST00000435405 301 ntBASIC1.48□□□□□ -2.17
CCDC3Q9BQI4 AC023790.1-201ENST00000482174 347 ntBASIC1.48□□□□□ -2.17
CCDC3Q9BQI4 SEPT14P8-201ENST00000508026 178 ntBASIC1.48□□□□□ -2.17
CCDC3Q9BQI4 AL161670.1-201ENST00000554348 137 ntBASIC1.48□□□□□ -2.17
CCDC3Q9BQI4 AL442663.2-201ENST00000554385 511 ntBASIC1.48□□□□□ -2.17
CCDC3Q9BQI4 AL356055.1-201ENST00000602528 446 ntBASIC1.48□□□□□ -2.17
CCDC3Q9BQI4 SNORA28-201ENST00000606769 126 ntBASIC1.48□□□□□ -2.17
CCDC3Q9BQI4 SNORD113-5-201ENST00000607261 78 ntBASIC1.48□□□□□ -2.17
CCDC3Q9BQI4 ZNF209P-201ENST00000593450 2304 ntBASIC1.48□□□□□ -2.17
CCDC3Q9BQI4 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
CCDC3Q9BQI4 MIR302D-201ENST00000362275 68 ntBASIC1.47□□□□□ -2.17
CCDC3Q9BQI4 SNORD81.1-201ENST00000363064 77 ntBASIC1.47□□□□□ -2.17
CCDC3Q9BQI4 SNORA7.1-201ENST00000363750 139 ntBASIC1.47□□□□□ -2.17
CCDC3Q9BQI4 Y_RNA.222-201ENST00000364264 102 ntBASIC1.47□□□□□ -2.17
CCDC3Q9BQI4 SNORA4.2-201ENST00000365313 147 ntBASIC1.47□□□□□ -2.17
CCDC3Q9BQI4 SNORA33.2-201ENST00000365413 134 ntBASIC1.47□□□□□ -2.17
CCDC3Q9BQI4 SNORD115-46-201ENST00000390982 71 ntBASIC1.47□□□□□ -2.17
CCDC3Q9BQI4 MIR1267-201ENST00000408723 78 ntBASIC1.47□□□□□ -2.17
CCDC3Q9BQI4 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.47□□□□□ -2.17
CCDC3Q9BQI4 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.47□□□□□ -2.17
CCDC3Q9BQI4 RNU6-966P-201ENST00000516479 104 ntBASIC1.47□□□□□ -2.17
CCDC3Q9BQI4 RNU6-1337P-201ENST00000516525 95 ntBASIC1.47□□□□□ -2.17
CCDC3Q9BQI4 AP002004.2-201ENST00000531656 154 ntBASIC1.47□□□□□ -2.17
CCDC3Q9BQI4 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
CCDC3Q9BQI4 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 SNORD33-201ENST00000362761 85 ntBASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 Y_RNA.143-201ENST00000363520 106 ntBASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 SNORA25.9-201ENST00000365087 128 ntBASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 Y_RNA.331-201ENST00000365267 102 ntBASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 Y_RNA.389-201ENST00000383924 113 ntBASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 RNU6-376P-201ENST00000384731 106 ntBASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 MIR499A-201ENST00000384903 122 ntBASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 RNU1-78P-201ENST00000391248 165 ntBASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 181.5 ms