Protein–RNA interactions for Protein: Q9BQ90

KLHDC3, Kelch domain-containing protein 3, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHDC3Q9BQ90 AC012676.2-201ENST00000619258 186 ntBASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 AC068647.2-201ENST00000637380 353 ntBASIC0.97□□□□□ -2.25
KLHDC3Q9BQ90 MIR96-201ENST00000362288 78 ntBASIC0.96□□□□□ -2.26
KLHDC3Q9BQ90 RNY1P10-201ENST00000363268 113 ntBASIC0.96□□□□□ -2.26
KLHDC3Q9BQ90 Y_RNA.387-201ENST00000383918 102 ntBASIC0.96□□□□□ -2.26
KLHDC3Q9BQ90 Y_RNA.605-201ENST00000410577 105 ntBASIC0.96□□□□□ -2.26
KLHDC3Q9BQ90 RNU6-1304P-201ENST00000411374 106 ntBASIC0.96□□□□□ -2.26
KLHDC3Q9BQ90 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.96□□□□□ -2.26
KLHDC3Q9BQ90 ELOCP24-201ENST00000456370 334 ntBASIC0.96□□□□□ -2.26
KLHDC3Q9BQ90 AL049830.1-201ENST00000468034 425 ntBASIC0.96□□□□□ -2.26
KLHDC3Q9BQ90 HMGN1P7-201ENST00000491722 313 ntBASIC0.96□□□□□ -2.26
KLHDC3Q9BQ90 RNU6-322P-201ENST00000516010 103 ntBASIC0.96□□□□□ -2.26
KLHDC3Q9BQ90 MIR6767-201ENST00000637302 66 ntBASIC0.96□□□□□ -2.26
KLHDC3Q9BQ90 AC005592.1-201ENST00000566527 1640 ntBASIC0.96□□□□□ -2.26
KLHDC3Q9BQ90 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 AL391516.1-201ENST00000554380 2449 ntBASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 RNU6-490P-201ENST00000362985 107 ntBASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 Y_RNA.142-201ENST00000363491 102 ntBASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 Y_RNA.259-201ENST00000364619 101 ntBASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 RNU6-1283P-201ENST00000365314 105 ntBASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 SNORA2.2-201ENST00000365473 135 ntBASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 RNU6-926P-201ENST00000384075 107 ntBASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 MIR628-201ENST00000385229 95 ntBASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 AL451046.2-201ENST00000403074 277 ntBASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 MRPS18CP6-201ENST00000423587 223 ntBASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 AC233266.1-201ENST00000454518 96 ntBASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 RNU7-169P-201ENST00000459456 61 ntBASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 AL133373.1-201ENST00000497098 94 ntBASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 RNU7-12P-201ENST00000516030 62 ntBASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 RNU6-1012P-201ENST00000516606 109 ntBASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 AC242852.1-201ENST00000612151 96 ntBASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 AC240442.1-201ENST00000616055 283 ntBASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 U2.1-201ENST00000618978 145 ntBASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 AC244015.1-201ENST00000622301 99 ntBASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.95□□□□□ -2.26
KLHDC3Q9BQ90 MIRLET7C-201ENST00000362160 84 ntBASIC0.94□□□□□ -2.26
KLHDC3Q9BQ90 MIR337-201ENST00000362281 93 ntBASIC0.94□□□□□ -2.26
KLHDC3Q9BQ90 Y_RNA.314-201ENST00000365114 102 ntBASIC0.94□□□□□ -2.26
KLHDC3Q9BQ90 Y_RNA.384-201ENST00000383909 102 ntBASIC0.94□□□□□ -2.26
KLHDC3Q9BQ90 Y_RNA.390-201ENST00000383932 102 ntBASIC0.94□□□□□ -2.26
KLHDC3Q9BQ90 SNORA25-201ENST00000384384 134 ntBASIC0.94□□□□□ -2.26
KLHDC3Q9BQ90 MIR559-201ENST00000385188 96 ntBASIC0.94□□□□□ -2.26
KLHDC3Q9BQ90 SNORD41-201ENST00000386967 70 ntBASIC0.94□□□□□ -2.26
KLHDC3Q9BQ90 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
KLHDC3Q9BQ90 RNY4P36-201ENST00000391116 96 ntBASIC0.94□□□□□ -2.26
KLHDC3Q9BQ90 AL031003.1-201ENST00000404229 172 ntBASIC0.94□□□□□ -2.26
KLHDC3Q9BQ90 RNU2-54P-201ENST00000410299 190 ntBASIC0.94□□□□□ -2.26
KLHDC3Q9BQ90 AL162725.1-201ENST00000435405 301 ntBASIC0.94□□□□□ -2.26
KLHDC3Q9BQ90 DYNLT3P2-201ENST00000442517 295 ntBASIC0.94□□□□□ -2.26
KLHDC3Q9BQ90 RNU6-277P-201ENST00000516272 106 ntBASIC0.94□□□□□ -2.26
KLHDC3Q9BQ90 RNU6-63P-201ENST00000516690 95 ntBASIC0.94□□□□□ -2.26
KLHDC3Q9BQ90 AC055872.1-201ENST00000570978 278 ntBASIC0.94□□□□□ -2.26
KLHDC3Q9BQ90 UBE2V2P2-201ENST00000587677 504 ntBASIC0.94□□□□□ -2.26
KLHDC3Q9BQ90 AC005176.2-201ENST00000596933 147 ntBASIC0.94□□□□□ -2.26
KLHDC3Q9BQ90 AL357312.1-201ENST00000603879 298 ntBASIC0.94□□□□□ -2.26
KLHDC3Q9BQ90 MIR1302-1-201ENST00000637932 143 ntBASIC0.94□□□□□ -2.26
KLHDC3Q9BQ90 RNU4-41P-201ENST00000364426 143 ntBASIC0.93□□□□□ -2.26
KLHDC3Q9BQ90 SNORD116-29-201ENST00000384516 83 ntBASIC0.93□□□□□ -2.26
KLHDC3Q9BQ90 AL354751.2-201ENST00000415471 210 ntBASIC0.93□□□□□ -2.26
KLHDC3Q9BQ90 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.93□□□□□ -2.26
KLHDC3Q9BQ90 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC0.93□□□□□ -2.26
KLHDC3Q9BQ90 SNORA31.4-201ENST00000516049 129 ntBASIC0.93□□□□□ -2.26
KLHDC3Q9BQ90 RNU6-917P-201ENST00000516294 104 ntBASIC0.93□□□□□ -2.26
KLHDC3Q9BQ90 RNU6-1337P-201ENST00000516525 95 ntBASIC0.93□□□□□ -2.26
KLHDC3Q9BQ90 AC005730.3-201ENST00000583067 366 ntBASIC0.93□□□□□ -2.26
KLHDC3Q9BQ90 MIR4295-201ENST00000585286 85 ntBASIC0.93□□□□□ -2.26
KLHDC3Q9BQ90 AL022345.2-201ENST00000606307 135 ntBASIC0.93□□□□□ -2.26
KLHDC3Q9BQ90 BX284668.6-201ENST00000606899 438 ntBASIC0.93□□□□□ -2.26
KLHDC3Q9BQ90 AC027335.2-201ENST00000624030 375 ntBASIC0.93□□□□□ -2.26
KLHDC3Q9BQ90 AC138305.3-201ENST00000624988 240 ntBASIC0.93□□□□□ -2.26
KLHDC3Q9BQ90 Y_RNA.27-201ENST00000362540 103 ntBASIC0.92□□□□□ -2.26
KLHDC3Q9BQ90 Y_RNA.101-201ENST00000363154 102 ntBASIC0.92□□□□□ -2.26
KLHDC3Q9BQ90 RNY3P11-201ENST00000364153 102 ntBASIC0.92□□□□□ -2.26
KLHDC3Q9BQ90 Y_RNA.230-201ENST00000364348 109 ntBASIC0.92□□□□□ -2.26
KLHDC3Q9BQ90 RNU4-38P-201ENST00000364472 129 ntBASIC0.92□□□□□ -2.26
KLHDC3Q9BQ90 RNU6-1187P-201ENST00000364771 110 ntBASIC0.92□□□□□ -2.26
KLHDC3Q9BQ90 RNU6-1040P-201ENST00000383974 107 ntBASIC0.92□□□□□ -2.26
KLHDC3Q9BQ90 RNU6-136P-201ENST00000384663 107 ntBASIC0.92□□□□□ -2.26
KLHDC3Q9BQ90 RNU6-1054P-201ENST00000411293 104 ntBASIC0.92□□□□□ -2.26
KLHDC3Q9BQ90 Z98949.2-201ENST00000440996 144 ntBASIC0.92□□□□□ -2.26
KLHDC3Q9BQ90 AC093850.1-201ENST00000454121 251 ntBASIC0.92□□□□□ -2.26
KLHDC3Q9BQ90 CYCTP-201ENST00000504253 315 ntBASIC0.92□□□□□ -2.26
KLHDC3Q9BQ90 RNA5SP404-201ENST00000517118 132 ntBASIC0.92□□□□□ -2.26
KLHDC3Q9BQ90 AL117336.2-201ENST00000602435 335 ntBASIC0.92□□□□□ -2.26
KLHDC3Q9BQ90 AL132765.2-201ENST00000610812 351 ntBASIC0.92□□□□□ -2.26
KLHDC3Q9BQ90 MTND4LP32-201ENST00000636111 270 ntBASIC0.92□□□□□ -2.26
KLHDC3Q9BQ90 RNU6-833P-201ENST00000363486 107 ntBASIC0.91□□□□□ -2.26
KLHDC3Q9BQ90 RNU6-20P-201ENST00000384106 107 ntBASIC0.91□□□□□ -2.26
KLHDC3Q9BQ90 RNU6-1105P-201ENST00000384774 107 ntBASIC0.91□□□□□ -2.26
KLHDC3Q9BQ90 MIR891A-201ENST00000401237 79 ntBASIC0.91□□□□□ -2.26
KLHDC3Q9BQ90 RNA5SP511-201ENST00000410487 115 ntBASIC0.91□□□□□ -2.26
KLHDC3Q9BQ90 RNU2-61P-201ENST00000411069 191 ntBASIC0.91□□□□□ -2.26
KLHDC3Q9BQ90 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.91□□□□□ -2.26
KLHDC3Q9BQ90 RPS4XP11-201ENST00000446897 772 ntBASIC0.91□□□□□ -2.26
KLHDC3Q9BQ90 RPL39P39-201ENST00000455840 151 ntBASIC0.91□□□□□ -2.26
KLHDC3Q9BQ90 RPS23P4-201ENST00000487908 423 ntBASIC0.91□□□□□ -2.26
KLHDC3Q9BQ90 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.91□□□□□ -2.26
KLHDC3Q9BQ90 UBL5P1-201ENST00000507979 193 ntBASIC0.91□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 202.7 ms