Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNU7-128P-201ENST00000517247 62 ntBASIC1.63□□□□□ -2.15
USP28Q96RU2 SUMO2P18-201ENST00000518873 252 ntBASIC1.63□□□□□ -2.15
USP28Q96RU2 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.63□□□□□ -2.15
USP28Q96RU2 U6.108-201ENST00000637764 58 ntBASIC1.63□□□□□ -2.15
USP28Q96RU2 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.63□□□□□ -2.15
USP28Q96RU2 SNORA27.1-201ENST00000362604 124 ntBASIC1.62□□□□□ -2.15
USP28Q96RU2 Y_RNA.461-201ENST00000384263 103 ntBASIC1.62□□□□□ -2.15
USP28Q96RU2 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
USP28Q96RU2 SNORA67.6-201ENST00000391093 99 ntBASIC1.62□□□□□ -2.15
USP28Q96RU2 MIR1253-201ENST00000408273 105 ntBASIC1.62□□□□□ -2.15
USP28Q96RU2 RN7SKP51-201ENST00000410781 304 ntBASIC1.62□□□□□ -2.15
USP28Q96RU2 HMGN2P23-201ENST00000456759 269 ntBASIC1.62□□□□□ -2.15
USP28Q96RU2 RNU6-63P-201ENST00000516690 95 ntBASIC1.62□□□□□ -2.15
USP28Q96RU2 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.62□□□□□ -2.15
USP28Q96RU2 AL161670.1-201ENST00000554348 137 ntBASIC1.62□□□□□ -2.15
USP28Q96RU2 SNORD53B-201ENST00000577887 78 ntBASIC1.62□□□□□ -2.15
USP28Q96RU2 MIR5094-201ENST00000578766 85 ntBASIC1.62□□□□□ -2.15
USP28Q96RU2 AC006380.1-201ENST00000603598 186 ntBASIC1.62□□□□□ -2.15
USP28Q96RU2 SNORD113-5-201ENST00000607261 78 ntBASIC1.62□□□□□ -2.15
USP28Q96RU2 AP001282.2-201ENST00000616149 309 ntBASIC1.62□□□□□ -2.15
USP28Q96RU2 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.62□□□□□ -2.15
USP28Q96RU2 MIR8062-201ENST00000621515 85 ntBASIC1.62□□□□□ -2.15
USP28Q96RU2 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.62□□□□□ -2.15
USP28Q96RU2 AC010615.1-201ENST00000594254 1764 ntBASIC1.62□□□□□ -2.15
USP28Q96RU2 RNU6-1266P-201ENST00000362794 105 ntBASIC1.61□□□□□ -2.15
USP28Q96RU2 RNU4-80P-201ENST00000363200 141 ntBASIC1.61□□□□□ -2.15
USP28Q96RU2 Y_RNA.176-201ENST00000363815 109 ntBASIC1.61□□□□□ -2.15
USP28Q96RU2 Y_RNA.383-201ENST00000383855 97 ntBASIC1.61□□□□□ -2.15
USP28Q96RU2 SNORD116-13-201ENST00000384408 92 ntBASIC1.61□□□□□ -2.15
USP28Q96RU2 RNU6-505P-201ENST00000384427 107 ntBASIC1.61□□□□□ -2.15
USP28Q96RU2 RNU6-1186P-201ENST00000410429 97 ntBASIC1.61□□□□□ -2.15
USP28Q96RU2 RNU6-1203P-201ENST00000410703 110 ntBASIC1.61□□□□□ -2.15
USP28Q96RU2 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.61□□□□□ -2.15
USP28Q96RU2 RPS29P29-201ENST00000456396 171 ntBASIC1.61□□□□□ -2.15
USP28Q96RU2 RPS27P22-201ENST00000478056 241 ntBASIC1.61□□□□□ -2.15
USP28Q96RU2 AC010409.1-201ENST00000487382 476 ntBASIC1.61□□□□□ -2.15
USP28Q96RU2 SEPT14P8-201ENST00000508026 178 ntBASIC1.61□□□□□ -2.15
USP28Q96RU2 AC010598.1-201ENST00000510378 103 ntBASIC1.61□□□□□ -2.15
USP28Q96RU2 SNORA31.24-201ENST00000517232 57 ntBASIC1.61□□□□□ -2.15
USP28Q96RU2 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.61□□□□□ -2.15
USP28Q96RU2 AC005786.1-201ENST00000588553 154 ntBASIC1.61□□□□□ -2.15
USP28Q96RU2 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.61□□□□□ -2.15
USP28Q96RU2 AL353149.1-201ENST00000610667 244 ntBASIC1.61□□□□□ -2.15
USP28Q96RU2 AC127459.3-201ENST00000624328 466 ntBASIC1.61□□□□□ -2.15
USP28Q96RU2 MIR424-201ENST00000362227 98 ntBASIC1.6□□□□□ -2.15
USP28Q96RU2 U8.1-201ENST00000362843 134 ntBASIC1.6□□□□□ -2.15
USP28Q96RU2 Y_RNA.149-201ENST00000363558 117 ntBASIC1.6□□□□□ -2.15
USP28Q96RU2 RNU1-96P-201ENST00000364163 162 ntBASIC1.6□□□□□ -2.15
USP28Q96RU2 RNU6-290P-201ENST00000365212 101 ntBASIC1.6□□□□□ -2.15
USP28Q96RU2 RNU6-713P-201ENST00000384761 107 ntBASIC1.6□□□□□ -2.15
USP28Q96RU2 SNORA48.1-201ENST00000390879 135 ntBASIC1.6□□□□□ -2.15
USP28Q96RU2 RNU2-61P-201ENST00000411069 191 ntBASIC1.6□□□□□ -2.15
USP28Q96RU2 RPL23AP36-201ENST00000413895 458 ntBASIC1.6□□□□□ -2.15
USP28Q96RU2 AC245047.4-201ENST00000433189 144 ntBASIC1.6□□□□□ -2.15
USP28Q96RU2 AL606517.2-201ENST00000442855 241 ntBASIC1.6□□□□□ -2.15
USP28Q96RU2 RPS26P55-201ENST00000471178 356 ntBASIC1.6□□□□□ -2.15
USP28Q96RU2 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.6□□□□□ -2.15
USP28Q96RU2 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.6□□□□□ -2.15
USP28Q96RU2 RNA5SP20-201ENST00000515976 84 ntBASIC1.6□□□□□ -2.15
USP28Q96RU2 SCARNA24.2-201ENST00000516968 130 ntBASIC1.6□□□□□ -2.15
USP28Q96RU2 DEFB108E-201ENST00000524692 240 ntBASIC1.6□□□□□ -2.15
USP28Q96RU2 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.6□□□□□ -2.15
USP28Q96RU2 MIR4503-201ENST00000582187 83 ntBASIC1.6□□□□□ -2.15
USP28Q96RU2 MIR4438-201ENST00000585271 93 ntBASIC1.6□□□□□ -2.15
USP28Q96RU2 U6.73-201ENST00000619194 103 ntBASIC1.6□□□□□ -2.15
USP28Q96RU2 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.6□□□□□ -2.15
USP28Q96RU2 RNU6-661P-201ENST00000362409 107 ntBASIC1.59□□□□□ -2.15
USP28Q96RU2 RNU4-90P-201ENST00000362773 141 ntBASIC1.59□□□□□ -2.15
USP28Q96RU2 RNU1-22P-201ENST00000363334 158 ntBASIC1.59□□□□□ -2.15
USP28Q96RU2 Y_RNA.237-201ENST00000364439 102 ntBASIC1.59□□□□□ -2.15
USP28Q96RU2 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.59□□□□□ -2.15
USP28Q96RU2 MIR873-201ENST00000401120 77 ntBASIC1.59□□□□□ -2.15
USP28Q96RU2 MIR1261-201ENST00000408659 82 ntBASIC1.59□□□□□ -2.15
USP28Q96RU2 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.59□□□□□ -2.15
USP28Q96RU2 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.59□□□□□ -2.15
USP28Q96RU2 AL390729.2-201ENST00000416137 156 ntBASIC1.59□□□□□ -2.15
USP28Q96RU2 EBAG9P1-201ENST00000418955 543 ntBASIC1.59□□□□□ -2.15
USP28Q96RU2 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.59□□□□□ -2.15
USP28Q96RU2 POLR2KP2-201ENST00000438155 177 ntBASIC1.59□□□□□ -2.15
USP28Q96RU2 TRBVB-201ENST00000477100 408 ntBASIC1.59□□□□□ -2.15
USP28Q96RU2 RNU6-1143P-201ENST00000516125 104 ntBASIC1.59□□□□□ -2.15
USP28Q96RU2 RNU6-1338P-201ENST00000516328 91 ntBASIC1.59□□□□□ -2.15
USP28Q96RU2 RNU6-1337P-201ENST00000516525 95 ntBASIC1.59□□□□□ -2.15
USP28Q96RU2 RPL21P9-201ENST00000556149 474 ntBASIC1.59□□□□□ -2.15
USP28Q96RU2 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.59□□□□□ -2.15
USP28Q96RU2 MIR4303-201ENST00000581299 66 ntBASIC1.59□□□□□ -2.15
USP28Q96RU2 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.59□□□□□ -2.15
USP28Q96RU2 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.58□□□□□ -2.16
USP28Q96RU2 Y_RNA.144-201ENST00000363521 113 ntBASIC1.58□□□□□ -2.16
USP28Q96RU2 RNU6-117P-201ENST00000365415 107 ntBASIC1.58□□□□□ -2.16
USP28Q96RU2 RNU6-338P-201ENST00000383888 105 ntBASIC1.58□□□□□ -2.16
USP28Q96RU2 Y_RNA.569-201ENST00000384749 103 ntBASIC1.58□□□□□ -2.16
USP28Q96RU2 RNU2-38P-201ENST00000410856 79 ntBASIC1.58□□□□□ -2.16
USP28Q96RU2 MTCO1P5-201ENST00000433573 344 ntBASIC1.58□□□□□ -2.16
USP28Q96RU2 SNRPGP13-201ENST00000442212 177 ntBASIC1.58□□□□□ -2.16
USP28Q96RU2 AC097462.1-201ENST00000514125 324 ntBASIC1.58□□□□□ -2.16
USP28Q96RU2 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.58□□□□□ -2.16
USP28Q96RU2 AC068338.1-201ENST00000565567 176 ntBASIC1.58□□□□□ -2.16
USP28Q96RU2 MIR7974-201ENST00000615835 79 ntBASIC1.58□□□□□ -2.16
USP28Q96RU2 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms