Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.14□□□□□ -2.23
VPS39Q96JC1 MIR4498-201ENST00000577599 66 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 MIR4659A-201ENST00000580269 81 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.14□□□□□ -2.23
VPS39Q96JC1 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.14□□□□□ -2.23
VPS39Q96JC1 U8.16-201ENST00000391279 133 ntBASIC1.13□□□□□ -2.23
VPS39Q96JC1 MIR873-201ENST00000401120 77 ntBASIC1.13□□□□□ -2.23
VPS39Q96JC1 AF228730.4-201ENST00000421457 183 ntBASIC1.13□□□□□ -2.23
VPS39Q96JC1 AC233266.1-201ENST00000454518 96 ntBASIC1.13□□□□□ -2.23
VPS39Q96JC1 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.13□□□□□ -2.23
VPS39Q96JC1 AC092991.1-201ENST00000477176 376 ntBASIC1.13□□□□□ -2.23
VPS39Q96JC1 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.13□□□□□ -2.23
VPS39Q96JC1 RNU6-1012P-201ENST00000516606 109 ntBASIC1.13□□□□□ -2.23
VPS39Q96JC1 RNA5SP168-201ENST00000516642 112 ntBASIC1.13□□□□□ -2.23
VPS39Q96JC1 RNU7-4P-201ENST00000516961 62 ntBASIC1.13□□□□□ -2.23
VPS39Q96JC1 MIR2355-201ENST00000517199 87 ntBASIC1.13□□□□□ -2.23
VPS39Q96JC1 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC1.13□□□□□ -2.23
VPS39Q96JC1 AC242852.1-201ENST00000612151 96 ntBASIC1.13□□□□□ -2.23
VPS39Q96JC1 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.13□□□□□ -2.23
VPS39Q96JC1 AC012676.2-201ENST00000619258 186 ntBASIC1.13□□□□□ -2.23
VPS39Q96JC1 AC244015.1-201ENST00000622301 99 ntBASIC1.13□□□□□ -2.23
VPS39Q96JC1 AC127459.3-201ENST00000624328 466 ntBASIC1.13□□□□□ -2.23
VPS39Q96JC1 SNORD3E-202ENST00000627253 216 ntBASIC1.13□□□□□ -2.23
VPS39Q96JC1 U6.92-201ENST00000636464 89 ntBASIC1.13□□□□□ -2.23
VPS39Q96JC1 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.13□□□□□ -2.23
VPS39Q96JC1 Y_RNA.187-201ENST00000363918 113 ntBASIC1.12□□□□□ -2.23
VPS39Q96JC1 Y_RNA.263-201ENST00000364659 114 ntBASIC1.12□□□□□ -2.23
VPS39Q96JC1 RNY3P4-201ENST00000384428 101 ntBASIC1.12□□□□□ -2.23
VPS39Q96JC1 RNU6-1009P-201ENST00000390996 107 ntBASIC1.12□□□□□ -2.23
VPS39Q96JC1 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.12□□□□□ -2.23
VPS39Q96JC1 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.12□□□□□ -2.23
VPS39Q96JC1 RPS29P28-201ENST00000446439 141 ntBASIC1.12□□□□□ -2.23
VPS39Q96JC1 HSPE1P13-201ENST00000451143 297 ntBASIC1.12□□□□□ -2.23
VPS39Q96JC1 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.12□□□□□ -2.23
VPS39Q96JC1 RNU7-152P-201ENST00000458982 64 ntBASIC1.12□□□□□ -2.23
VPS39Q96JC1 AL117351.2-201ENST00000513571 157 ntBASIC1.12□□□□□ -2.23
VPS39Q96JC1 Y_RNA.661-201ENST00000516003 99 ntBASIC1.12□□□□□ -2.23
VPS39Q96JC1 Y_RNA.702-201ENST00000516843 96 ntBASIC1.12□□□□□ -2.23
VPS39Q96JC1 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.12□□□□□ -2.23
VPS39Q96JC1 AC006600.1-201ENST00000572529 153 ntBASIC1.12□□□□□ -2.23
VPS39Q96JC1 MIR4795-201ENST00000584182 89 ntBASIC1.12□□□□□ -2.23
VPS39Q96JC1 MIR6078-201ENST00000611069 100 ntBASIC1.12□□□□□ -2.23
VPS39Q96JC1 Y_RNA.804-201ENST00000615262 101 ntBASIC1.12□□□□□ -2.23
VPS39Q96JC1 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.12□□□□□ -2.23
VPS39Q96JC1 Y_RNA.5-201ENST00000362334 102 ntBASIC1.11□□□□□ -2.23
VPS39Q96JC1 RNU6-1115P-201ENST00000362490 106 ntBASIC1.11□□□□□ -2.23
VPS39Q96JC1 RNU4-73P-201ENST00000363164 141 ntBASIC1.11□□□□□ -2.23
VPS39Q96JC1 Y_RNA.265-201ENST00000364677 108 ntBASIC1.11□□□□□ -2.23
VPS39Q96JC1 Y_RNA.315-201ENST00000365117 102 ntBASIC1.11□□□□□ -2.23
VPS39Q96JC1 SNORD116-13-201ENST00000384408 92 ntBASIC1.11□□□□□ -2.23
VPS39Q96JC1 Y_RNA.579-201ENST00000390939 94 ntBASIC1.11□□□□□ -2.23
VPS39Q96JC1 AL034345.1-201ENST00000407768 123 ntBASIC1.11□□□□□ -2.23
VPS39Q96JC1 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.11□□□□□ -2.23
VPS39Q96JC1 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.11□□□□□ -2.23
VPS39Q96JC1 MTND1P14-201ENST00000427400 950 ntBASIC1.11□□□□□ -2.23
VPS39Q96JC1 Z98949.2-201ENST00000440996 144 ntBASIC1.11□□□□□ -2.23
VPS39Q96JC1 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.11□□□□□ -2.23
VPS39Q96JC1 OR9P1P-201ENST00000496431 281 ntBASIC1.11□□□□□ -2.23
VPS39Q96JC1 RNU6-1337P-201ENST00000516525 95 ntBASIC1.11□□□□□ -2.23
VPS39Q96JC1 RPL21P9-201ENST00000556149 474 ntBASIC1.11□□□□□ -2.23
VPS39Q96JC1 AC240442.1-201ENST00000616055 283 ntBASIC1.11□□□□□ -2.23
VPS39Q96JC1 AC073349.3-201ENST00000617616 186 ntBASIC1.11□□□□□ -2.23
VPS39Q96JC1 MIR4272-201ENST00000635924 64 ntBASIC1.11□□□□□ -2.23
VPS39Q96JC1 RNU6-1310P-201ENST00000384153 107 ntBASIC1.1□□□□□ -2.23
VPS39Q96JC1 Y_RNA.446-201ENST00000384178 104 ntBASIC1.1□□□□□ -2.23
VPS39Q96JC1 RNU6-505P-201ENST00000384427 107 ntBASIC1.1□□□□□ -2.23
VPS39Q96JC1 MIR222-201ENST00000384992 110 ntBASIC1.1□□□□□ -2.23
VPS39Q96JC1 AL031003.1-201ENST00000404229 172 ntBASIC1.1□□□□□ -2.23
VPS39Q96JC1 RNU5A-5P-201ENST00000411054 116 ntBASIC1.1□□□□□ -2.23
VPS39Q96JC1 MRPL35P3-201ENST00000421557 364 ntBASIC1.1□□□□□ -2.23
VPS39Q96JC1 FCF1P4-201ENST00000448326 183 ntBASIC1.1□□□□□ -2.23
VPS39Q96JC1 RNU7-94P-201ENST00000459576 63 ntBASIC1.1□□□□□ -2.23
VPS39Q96JC1 AC093852.1-201ENST00000503587 266 ntBASIC1.1□□□□□ -2.23
VPS39Q96JC1 UBL5P1-201ENST00000507979 193 ntBASIC1.1□□□□□ -2.23
VPS39Q96JC1 RNU6-1096P-201ENST00000517089 102 ntBASIC1.1□□□□□ -2.23
VPS39Q96JC1 SNORA70.22-201ENST00000517160 124 ntBASIC1.1□□□□□ -2.23
VPS39Q96JC1 RNU6-165P-201ENST00000517170 99 ntBASIC1.1□□□□□ -2.23
VPS39Q96JC1 AC005176.2-201ENST00000596933 147 ntBASIC1.1□□□□□ -2.23
VPS39Q96JC1 AC092447.9-201ENST00000603395 144 ntBASIC1.1□□□□□ -2.23
VPS39Q96JC1 AL359821.1-201ENST00000605519 182 ntBASIC1.1□□□□□ -2.23
VPS39Q96JC1 AC091925.1-201ENST00000623204 462 ntBASIC1.1□□□□□ -2.23
VPS39Q96JC1 AL391516.1-201ENST00000554380 2449 ntBASIC1.1□□□□□ -2.23
VPS39Q96JC1 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.1□□□□□ -2.23
VPS39Q96JC1 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
VPS39Q96JC1 MIRLET7C-201ENST00000362160 84 ntBASIC1.09□□□□□ -2.23
VPS39Q96JC1 Y_RNA.146-201ENST00000363549 102 ntBASIC1.09□□□□□ -2.23
VPS39Q96JC1 RNU4-41P-201ENST00000364426 143 ntBASIC1.09□□□□□ -2.23
VPS39Q96JC1 Y_RNA.361-201ENST00000365515 120 ntBASIC1.09□□□□□ -2.23
VPS39Q96JC1 RNU6-1080P-201ENST00000383982 107 ntBASIC1.09□□□□□ -2.23
VPS39Q96JC1 RNU6-424P-201ENST00000384367 105 ntBASIC1.09□□□□□ -2.23
VPS39Q96JC1 MIR628-201ENST00000385229 95 ntBASIC1.09□□□□□ -2.23
VPS39Q96JC1 MIR660-201ENST00000385235 97 ntBASIC1.09□□□□□ -2.23
VPS39Q96JC1 SNORD78.2-201ENST00000391076 69 ntBASIC1.09□□□□□ -2.23
VPS39Q96JC1 AL354751.2-201ENST00000415471 210 ntBASIC1.09□□□□□ -2.23
VPS39Q96JC1 MTCO2P27-201ENST00000420740 428 ntBASIC1.09□□□□□ -2.23
VPS39Q96JC1 AC099799.1-201ENST00000439809 192 ntBASIC1.09□□□□□ -2.23
VPS39Q96JC1 RNU6-1053P-201ENST00000515930 101 ntBASIC1.09□□□□□ -2.23
VPS39Q96JC1 RNU4-77P-201ENST00000516692 156 ntBASIC1.09□□□□□ -2.23
VPS39Q96JC1 RNU6-922P-201ENST00000516753 99 ntBASIC1.09□□□□□ -2.23
VPS39Q96JC1 RNU2-56P-201ENST00000516826 190 ntBASIC1.09□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 200.5 ms