Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 RPL23AP63-201ENST00000498752 471 ntBASIC2.36□□□□□ -2.03
CHMP4CQ96CF2 RNU6-63P-201ENST00000516690 95 ntBASIC2.36□□□□□ -2.03
CHMP4CQ96CF2 AC018630.2-201ENST00000534866 2403 ntBASIC2.36□□□□□ -2.03
CHMP4CQ96CF2 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.35□□□□□ -2.03
CHMP4CQ96CF2 Y_RNA.16-201ENST00000362421 102 ntBASIC2.35□□□□□ -2.03
CHMP4CQ96CF2 RNA5SP432-201ENST00000362480 116 ntBASIC2.35□□□□□ -2.03
CHMP4CQ96CF2 Y_RNA.341-201ENST00000365341 102 ntBASIC2.35□□□□□ -2.03
CHMP4CQ96CF2 RNU6-117P-201ENST00000365415 107 ntBASIC2.35□□□□□ -2.03
CHMP4CQ96CF2 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.35□□□□□ -2.03
CHMP4CQ96CF2 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.35□□□□□ -2.03
CHMP4CQ96CF2 RNA5SP100-201ENST00000410903 110 ntBASIC2.35□□□□□ -2.03
CHMP4CQ96CF2 RNA5SP59-201ENST00000410922 110 ntBASIC2.35□□□□□ -2.03
CHMP4CQ96CF2 AC244636.1-201ENST00000421152 228 ntBASIC2.35□□□□□ -2.03
CHMP4CQ96CF2 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.35□□□□□ -2.03
CHMP4CQ96CF2 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.35□□□□□ -2.03
CHMP4CQ96CF2 RNU6-1338P-201ENST00000516328 91 ntBASIC2.35□□□□□ -2.03
CHMP4CQ96CF2 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.35□□□□□ -2.03
CHMP4CQ96CF2 DEFB108E-201ENST00000524692 240 ntBASIC2.35□□□□□ -2.03
CHMP4CQ96CF2 MIR5089-201ENST00000580047 84 ntBASIC2.35□□□□□ -2.03
CHMP4CQ96CF2 AL512605.2-201ENST00000592972 256 ntBASIC2.35□□□□□ -2.03
CHMP4CQ96CF2 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.35□□□□□ -2.03
CHMP4CQ96CF2 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.35□□□□□ -2.03
CHMP4CQ96CF2 AL773524.1-201ENST00000614065 229 ntBASIC2.35□□□□□ -2.03
CHMP4CQ96CF2 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.35□□□□□ -2.03
CHMP4CQ96CF2 WWP1P1-201ENST00000466609 2769 ntBASIC2.34□□□□□ -2.03
CHMP4CQ96CF2 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
CHMP4CQ96CF2 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
CHMP4CQ96CF2 Y_RNA.456-201ENST00000384232 111 ntBASIC2.34□□□□□ -2.03
CHMP4CQ96CF2 RNU6-196P-201ENST00000384315 107 ntBASIC2.34□□□□□ -2.03
CHMP4CQ96CF2 RNU6-136P-201ENST00000384663 107 ntBASIC2.34□□□□□ -2.03
CHMP4CQ96CF2 Y_RNA.556-201ENST00000384677 113 ntBASIC2.34□□□□□ -2.03
CHMP4CQ96CF2 MIR562-201ENST00000384894 95 ntBASIC2.34□□□□□ -2.03
CHMP4CQ96CF2 MTCO1P5-201ENST00000433573 344 ntBASIC2.34□□□□□ -2.03
CHMP4CQ96CF2 SCARNA24.2-201ENST00000516968 130 ntBASIC2.34□□□□□ -2.03
CHMP4CQ96CF2 AL161670.1-201ENST00000554348 137 ntBASIC2.34□□□□□ -2.03
CHMP4CQ96CF2 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC2.34□□□□□ -2.03
CHMP4CQ96CF2 MIR3935-201ENST00000583472 104 ntBASIC2.34□□□□□ -2.03
CHMP4CQ96CF2 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.34□□□□□ -2.03
CHMP4CQ96CF2 MIR6079-201ENST00000635807 62 ntBASIC2.34□□□□□ -2.03
CHMP4CQ96CF2 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
CHMP4CQ96CF2 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
CHMP4CQ96CF2 SNORA63D-201ENST00000364359 132 ntBASIC2.33□□□□□ -2.04
CHMP4CQ96CF2 Y_RNA.368-201ENST00000365547 113 ntBASIC2.33□□□□□ -2.04
CHMP4CQ96CF2 Y_RNA.483-201ENST00000384380 101 ntBASIC2.33□□□□□ -2.04
CHMP4CQ96CF2 SNORD116-13-201ENST00000384408 92 ntBASIC2.33□□□□□ -2.04
CHMP4CQ96CF2 MIR520G-201ENST00000385064 90 ntBASIC2.33□□□□□ -2.04
CHMP4CQ96CF2 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
CHMP4CQ96CF2 AL445685.2-201ENST00000422551 342 ntBASIC2.33□□□□□ -2.04
CHMP4CQ96CF2 RPS20P10-201ENST00000451209 253 ntBASIC2.33□□□□□ -2.04
CHMP4CQ96CF2 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.33□□□□□ -2.04
CHMP4CQ96CF2 SERF1AP1-201ENST00000514575 187 ntBASIC2.33□□□□□ -2.04
CHMP4CQ96CF2 RNU6-191P-201ENST00000516295 94 ntBASIC2.33□□□□□ -2.04
CHMP4CQ96CF2 RNA5SP481-201ENST00000516814 122 ntBASIC2.33□□□□□ -2.04
CHMP4CQ96CF2 MIR4299-201ENST00000577899 72 ntBASIC2.33□□□□□ -2.04
CHMP4CQ96CF2 AL359851.1-201ENST00000569460 4997 ntBASIC2.33□□□□□ -2.04
CHMP4CQ96CF2 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
CHMP4CQ96CF2 AL391987.6-201ENST00000305671 199 ntBASIC2.32□□□□□ -2.04
CHMP4CQ96CF2 Y_RNA.396-201ENST00000383949 103 ntBASIC2.32□□□□□ -2.04
CHMP4CQ96CF2 RNU6-296P-201ENST00000384608 107 ntBASIC2.32□□□□□ -2.04
CHMP4CQ96CF2 RNA5SP109-201ENST00000391010 116 ntBASIC2.32□□□□□ -2.04
CHMP4CQ96CF2 RNA5SP511-201ENST00000410487 115 ntBASIC2.32□□□□□ -2.04
CHMP4CQ96CF2 CYCSP49-201ENST00000420810 319 ntBASIC2.32□□□□□ -2.04
CHMP4CQ96CF2 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC2.32□□□□□ -2.04
CHMP4CQ96CF2 AC245047.3-201ENST00000429428 127 ntBASIC2.32□□□□□ -2.04
CHMP4CQ96CF2 HSPE1P21-201ENST00000438283 308 ntBASIC2.32□□□□□ -2.04
CHMP4CQ96CF2 AC091021.1-201ENST00000468051 388 ntBASIC2.32□□□□□ -2.04
CHMP4CQ96CF2 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.32□□□□□ -2.04
CHMP4CQ96CF2 SNORA31.17-201ENST00000516953 127 ntBASIC2.32□□□□□ -2.04
CHMP4CQ96CF2 AC015720.1-201ENST00000565251 277 ntBASIC2.32□□□□□ -2.04
CHMP4CQ96CF2 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.32□□□□□ -2.04
CHMP4CQ96CF2 NAA50-211ENST00000630058 177 ntTSL 5 BASIC2.32□□□□□ -2.04
CHMP4CQ96CF2 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
CHMP4CQ96CF2 Y_RNA.237-201ENST00000364439 102 ntBASIC2.31□□□□□ -2.04
CHMP4CQ96CF2 Y_RNA.288-201ENST00000364854 92 ntBASIC2.31□□□□□ -2.04
CHMP4CQ96CF2 RNU6-950P-201ENST00000384651 107 ntBASIC2.31□□□□□ -2.04
CHMP4CQ96CF2 MIR568-201ENST00000385036 95 ntBASIC2.31□□□□□ -2.04
CHMP4CQ96CF2 MT-TW-201ENST00000387382 68 ntBASIC2.31□□□□□ -2.04
CHMP4CQ96CF2 SUMO2P12-201ENST00000405924 140 ntBASIC2.31□□□□□ -2.04
CHMP4CQ96CF2 AC009310.1-201ENST00000414414 451 ntBASIC2.31□□□□□ -2.04
CHMP4CQ96CF2 AL162725.1-201ENST00000435405 301 ntBASIC2.31□□□□□ -2.04
CHMP4CQ96CF2 RPL36AP21-201ENST00000490372 323 ntBASIC2.31□□□□□ -2.04
CHMP4CQ96CF2 RNU6-1096P-201ENST00000517089 102 ntBASIC2.31□□□□□ -2.04
CHMP4CQ96CF2 RNA5SP437-201ENST00000517249 129 ntBASIC2.31□□□□□ -2.04
CHMP4CQ96CF2 AC110588.1-201ENST00000559699 137 ntBASIC2.31□□□□□ -2.04
CHMP4CQ96CF2 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.31□□□□□ -2.04
CHMP4CQ96CF2 MIR4524B-201ENST00000581569 115 ntBASIC2.31□□□□□ -2.04
CHMP4CQ96CF2 AC004832.4-201ENST00000608952 331 ntBASIC2.31□□□□□ -2.04
CHMP4CQ96CF2 MIR8081-201ENST00000611533 95 ntBASIC2.31□□□□□ -2.04
CHMP4CQ96CF2 AP001282.2-201ENST00000616149 309 ntBASIC2.31□□□□□ -2.04
CHMP4CQ96CF2 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.31□□□□□ -2.04
CHMP4CQ96CF2 AC068647.2-201ENST00000637380 353 ntBASIC2.31□□□□□ -2.04
CHMP4CQ96CF2 Y_RNA.144-201ENST00000363521 113 ntBASIC2.3□□□□□ -2.04
CHMP4CQ96CF2 Y_RNA.172-201ENST00000363765 102 ntBASIC2.3□□□□□ -2.04
CHMP4CQ96CF2 Y_RNA.267-201ENST00000364679 109 ntBASIC2.3□□□□□ -2.04
CHMP4CQ96CF2 Y_RNA.310-201ENST00000365063 113 ntBASIC2.3□□□□□ -2.04
CHMP4CQ96CF2 AC091959.1-201ENST00000495857 238 ntBASIC2.3□□□□□ -2.04
CHMP4CQ96CF2 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2.3□□□□□ -2.04
CHMP4CQ96CF2 AC022217.4-201ENST00000604389 163 ntBASIC2.3□□□□□ -2.04
CHMP4CQ96CF2 AC005972.2-201ENST00000604690 348 ntBASIC2.3□□□□□ -2.04
CHMP4CQ96CF2 U4.1-201ENST00000620349 87 ntBASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms