Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 MIR764-201ENST00000390811 85 ntBASIC0.87□□□□□ -2.27
CCDC54Q8NEL0 AC108667.1-201ENST00000428618 249 ntBASIC0.87□□□□□ -2.27
CCDC54Q8NEL0 AL162725.1-201ENST00000435405 301 ntBASIC0.87□□□□□ -2.27
CCDC54Q8NEL0 RPL39P28-201ENST00000465655 155 ntBASIC0.87□□□□□ -2.27
CCDC54Q8NEL0 AC010655.3-201ENST00000478818 450 ntBASIC0.87□□□□□ -2.27
CCDC54Q8NEL0 AC091951.2-201ENST00000500762 203 ntBASIC0.87□□□□□ -2.27
CCDC54Q8NEL0 RNU6-436P-201ENST00000516171 114 ntBASIC0.87□□□□□ -2.27
CCDC54Q8NEL0 RNU4ATAC7P-201ENST00000516280 125 ntBASIC0.87□□□□□ -2.27
CCDC54Q8NEL0 Y_RNA.718-201ENST00000517110 102 ntBASIC0.87□□□□□ -2.27
CCDC54Q8NEL0 MIR2355-201ENST00000517199 87 ntBASIC0.87□□□□□ -2.27
CCDC54Q8NEL0 MIR3684-201ENST00000579779 74 ntBASIC0.87□□□□□ -2.27
CCDC54Q8NEL0 SNORD114-21-201ENST00000606412 72 ntBASIC0.87□□□□□ -2.27
CCDC54Q8NEL0 AL096861.1-201ENST00000610899 123 ntBASIC0.87□□□□□ -2.27
CCDC54Q8NEL0 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC0.87□□□□□ -2.27
CCDC54Q8NEL0 AC091925.1-201ENST00000623204 462 ntBASIC0.87□□□□□ -2.27
CCDC54Q8NEL0 U6.92-201ENST00000636464 89 ntBASIC0.87□□□□□ -2.27
CCDC54Q8NEL0 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.87□□□□□ -2.27
CCDC54Q8NEL0 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.87□□□□□ -2.27
CCDC54Q8NEL0 Y_RNA.142-201ENST00000363491 102 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 RNU1-124P-201ENST00000363861 145 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 RNU4-38P-201ENST00000364472 129 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 MIR625-201ENST00000385047 85 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 RNY4P36-201ENST00000391116 96 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 RNU2-54P-201ENST00000410299 190 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 RNU2-61P-201ENST00000411069 191 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 AF228730.4-201ENST00000421457 183 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 AC245047.7-201ENST00000440265 293 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 AC104332.1-201ENST00000440471 797 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 AC233266.1-201ENST00000454518 96 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 RNU7-12P-201ENST00000516030 62 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 RNU6-307P-201ENST00000516743 106 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 RNU2-56P-201ENST00000516826 190 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 RPL21P9-201ENST00000556149 474 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 AC136932.1-201ENST00000574771 208 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 MIR5690-201ENST00000583739 73 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 MIR3192-201ENST00000584920 77 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 SNORA28-201ENST00000606769 126 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 BX284668.6-201ENST00000606899 438 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 AC004832.4-201ENST00000608952 331 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 GHRLOS.1-201ENST00000610995 70 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 AC242852.1-201ENST00000612151 96 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 AC244015.1-201ENST00000622301 99 ntBASIC0.86□□□□□ -2.27
CCDC54Q8NEL0 AL391987.6-201ENST00000305671 199 ntBASIC0.85□□□□□ -2.27
CCDC54Q8NEL0 MIR378A-201ENST00000362177 66 ntBASIC0.85□□□□□ -2.27
CCDC54Q8NEL0 RNU6-626P-201ENST00000363354 107 ntBASIC0.85□□□□□ -2.27
CCDC54Q8NEL0 Y_RNA.146-201ENST00000363549 102 ntBASIC0.85□□□□□ -2.27
CCDC54Q8NEL0 Y_RNA.446-201ENST00000384178 104 ntBASIC0.85□□□□□ -2.27
CCDC54Q8NEL0 Y_RNA.463-201ENST00000384271 102 ntBASIC0.85□□□□□ -2.27
CCDC54Q8NEL0 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
CCDC54Q8NEL0 RNU6-910P-201ENST00000390844 107 ntBASIC0.85□□□□□ -2.27
CCDC54Q8NEL0 RNU6-482P-201ENST00000391068 107 ntBASIC0.85□□□□□ -2.27
CCDC54Q8NEL0 RNA5SP482-201ENST00000391269 118 ntBASIC0.85□□□□□ -2.27
CCDC54Q8NEL0 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.85□□□□□ -2.27
CCDC54Q8NEL0 AC093019.1-201ENST00000443135 252 ntBASIC0.85□□□□□ -2.27
CCDC54Q8NEL0 RNU7-152P-201ENST00000458982 64 ntBASIC0.85□□□□□ -2.27
CCDC54Q8NEL0 Y_RNA.653-201ENST00000459091 95 ntBASIC0.85□□□□□ -2.27
CCDC54Q8NEL0 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC0.85□□□□□ -2.27
CCDC54Q8NEL0 AC082651.2-201ENST00000496833 166 ntBASIC0.85□□□□□ -2.27
CCDC54Q8NEL0 RNU6-1278P-201ENST00000516130 107 ntBASIC0.85□□□□□ -2.27
CCDC54Q8NEL0 RNU7-28P-201ENST00000516759 62 ntBASIC0.85□□□□□ -2.27
CCDC54Q8NEL0 MIR4659A-201ENST00000580269 81 ntBASIC0.85□□□□□ -2.27
CCDC54Q8NEL0 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.85□□□□□ -2.27
CCDC54Q8NEL0 AL591926.4-201ENST00000616895 298 ntBASIC0.85□□□□□ -2.27
CCDC54Q8NEL0 RNU6-1115P-201ENST00000362490 106 ntBASIC0.84□□□□□ -2.27
CCDC54Q8NEL0 SNORD81.1-201ENST00000363064 77 ntBASIC0.84□□□□□ -2.27
CCDC54Q8NEL0 MIR520G-201ENST00000385064 90 ntBASIC0.84□□□□□ -2.27
CCDC54Q8NEL0 BTF3P4-201ENST00000418852 495 ntBASIC0.84□□□□□ -2.27
CCDC54Q8NEL0 PIGPP3-201ENST00000425307 415 ntBASIC0.84□□□□□ -2.27
CCDC54Q8NEL0 Y_RNA.661-201ENST00000516003 99 ntBASIC0.84□□□□□ -2.27
CCDC54Q8NEL0 RNU6-507P-201ENST00000516045 100 ntBASIC0.84□□□□□ -2.27
CCDC54Q8NEL0 AL358944.1-201ENST00000528537 144 ntBASIC0.84□□□□□ -2.27
CCDC54Q8NEL0 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.84□□□□□ -2.27
CCDC54Q8NEL0 AC093027.1-201ENST00000546698 429 ntBASIC0.84□□□□□ -2.27
CCDC54Q8NEL0 AC104984.5-201ENST00000586878 94 ntBASIC0.84□□□□□ -2.27
CCDC54Q8NEL0 AL020996.3-201ENST00000606617 222 ntBASIC0.84□□□□□ -2.27
CCDC54Q8NEL0 AC122108.2-201ENST00000611946 526 ntBASIC0.84□□□□□ -2.27
CCDC54Q8NEL0 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.84□□□□□ -2.27
CCDC54Q8NEL0 U2.1-201ENST00000618978 145 ntBASIC0.84□□□□□ -2.27
CCDC54Q8NEL0 MIR1302-1-201ENST00000637932 143 ntBASIC0.84□□□□□ -2.27
CCDC54Q8NEL0 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.84□□□□□ -2.28
CCDC54Q8NEL0 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.83□□□□□ -2.28
CCDC54Q8NEL0 RNU4-79P-201ENST00000362764 141 ntBASIC0.83□□□□□ -2.28
CCDC54Q8NEL0 SNORA72.1-201ENST00000363485 129 ntBASIC0.83□□□□□ -2.28
CCDC54Q8NEL0 SNORA2.2-201ENST00000365473 135 ntBASIC0.83□□□□□ -2.28
CCDC54Q8NEL0 RNU6-969P-201ENST00000383900 105 ntBASIC0.83□□□□□ -2.28
CCDC54Q8NEL0 FCF1P4-201ENST00000448326 183 ntBASIC0.83□□□□□ -2.28
CCDC54Q8NEL0 Y_RNA.632-201ENST00000459189 102 ntBASIC0.83□□□□□ -2.28
CCDC54Q8NEL0 PRDX4P1-201ENST00000507189 574 ntBASIC0.83□□□□□ -2.28
CCDC54Q8NEL0 AC114811.1-201ENST00000507207 168 ntBASIC0.83□□□□□ -2.28
CCDC54Q8NEL0 SNORD79.1-201ENST00000516069 84 ntBASIC0.83□□□□□ -2.28
CCDC54Q8NEL0 AL355375.2-201ENST00000574825 175 ntBASIC0.83□□□□□ -2.28
CCDC54Q8NEL0 MIR4423-201ENST00000580922 80 ntBASIC0.83□□□□□ -2.28
CCDC54Q8NEL0 AC005730.3-201ENST00000583067 366 ntBASIC0.83□□□□□ -2.28
CCDC54Q8NEL0 AC022441.3-201ENST00000605737 136 ntBASIC0.83□□□□□ -2.28
CCDC54Q8NEL0 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.83□□□□□ -2.28
CCDC54Q8NEL0 MIR4272-201ENST00000635924 64 ntBASIC0.83□□□□□ -2.28
CCDC54Q8NEL0 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.83□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 136.9 ms