Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RNU1-117P-201ENST00000517041 158 ntBASIC1.24□□□□□ -2.21
ZNF540Q8NDQ6 AC144568.1-201ENST00000520139 137 ntBASIC1.24□□□□□ -2.21
ZNF540Q8NDQ6 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.24□□□□□ -2.21
ZNF540Q8NDQ6 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.24□□□□□ -2.21
ZNF540Q8NDQ6 AC005592.1-201ENST00000566527 1640 ntBASIC1.24□□□□□ -2.21
ZNF540Q8NDQ6 MIR410-201ENST00000362222 80 ntBASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 Y_RNA.105-201ENST00000363182 111 ntBASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 SNORA63C-201ENST00000364578 129 ntBASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 SNORA25.9-201ENST00000365087 128 ntBASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 RNA5SP259-201ENST00000365541 109 ntBASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 Y_RNA.458-201ENST00000384240 102 ntBASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 AC113618.1-201ENST00000416747 285 ntBASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 HMGN2P34-201ENST00000437647 269 ntBASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 NDUFB4P10-201ENST00000452541 359 ntBASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 U8.20-201ENST00000459445 131 ntBASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 AC093852.1-201ENST00000503587 266 ntBASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 SNORA25.10-201ENST00000515926 124 ntBASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 SCARNA15.1-201ENST00000516384 125 ntBASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 MIR2355-201ENST00000517199 87 ntBASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 AC040926.1-201ENST00000530195 238 ntBASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 AC068338.1-201ENST00000565567 176 ntBASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 MIR4423-201ENST00000580922 80 ntBASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 RAC1P9-201ENST00000604990 392 ntBASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 AL157834.3-201ENST00000615543 103 ntBASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 AC010205.1-201ENST00000616668 449 ntBASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.23□□□□□ -2.21
ZNF540Q8NDQ6 Y_RNA.158-201ENST00000363651 101 ntBASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 Y_RNA.226-201ENST00000364337 114 ntBASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 RNU6-1305P-201ENST00000364353 104 ntBASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 RNU6-392P-201ENST00000364926 101 ntBASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 RNU6-926P-201ENST00000384075 107 ntBASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 MIR499A-201ENST00000384903 122 ntBASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 MIR1287-201ENST00000408492 90 ntBASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 Y_RNA.605-201ENST00000410577 105 ntBASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 RNU6-1199P-201ENST00000411249 104 ntBASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 AC008134.1-201ENST00000420943 193 ntBASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 RAB28P5-201ENST00000427490 651 ntBASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 TOMM22P2-201ENST00000430735 237 ntBASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 AC018448.1-201ENST00000552843 316 ntBASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 MIR3664-201ENST00000579074 99 ntBASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 AC113195.1-201ENST00000579952 141 ntBASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 MIR4659A-201ENST00000580269 81 ntBASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 AC240442.1-201ENST00000616055 283 ntBASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 AC007742.2-201ENST00000618226 398 ntBASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 AL353770.2-201ENST00000620024 78 ntBASIC1.22□□□□□ -2.21
ZNF540Q8NDQ6 Y_RNA.26-201ENST00000362539 101 ntBASIC1.21□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.101-201ENST00000363154 102 ntBASIC1.21□□□□□ -2.22
ZNF540Q8NDQ6 RNU1-22P-201ENST00000363334 158 ntBASIC1.21□□□□□ -2.22
ZNF540Q8NDQ6 SNORA33-201ENST00000363664 130 ntBASIC1.21□□□□□ -2.22
ZNF540Q8NDQ6 U3.8-201ENST00000363675 217 ntBASIC1.21□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.361-201ENST00000365515 120 ntBASIC1.21□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.527-201ENST00000384573 102 ntBASIC1.21□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-1011P-201ENST00000384668 107 ntBASIC1.21□□□□□ -2.22
ZNF540Q8NDQ6 MIR1185-2-201ENST00000408687 86 ntBASIC1.21□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-121P-201ENST00000410525 99 ntBASIC1.21□□□□□ -2.22
ZNF540Q8NDQ6 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.21□□□□□ -2.22
ZNF540Q8NDQ6 FCF1P4-201ENST00000448326 183 ntBASIC1.21□□□□□ -2.22
ZNF540Q8NDQ6 PCNPP5-201ENST00000452246 481 ntBASIC1.21□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-221P-201ENST00000459541 99 ntBASIC1.21□□□□□ -2.22
ZNF540Q8NDQ6 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.21□□□□□ -2.22
ZNF540Q8NDQ6 RN7SKP179-201ENST00000516126 217 ntBASIC1.21□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-988P-201ENST00000519081 107 ntBASIC1.21□□□□□ -2.22
ZNF540Q8NDQ6 AC136932.1-201ENST00000574771 208 ntBASIC1.21□□□□□ -2.22
ZNF540Q8NDQ6 AL353621.2-201ENST00000605340 133 ntBASIC1.21□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.202-201ENST00000364083 110 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 SNORA4.2-201ENST00000365313 147 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-1264P-201ENST00000383891 107 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-738P-201ENST00000384531 106 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 SNORD78.2-201ENST00000391076 69 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-985P-201ENST00000410182 104 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 AC005002.2-201ENST00000438228 269 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 UQCRBP2-201ENST00000447827 297 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 RNU7-57P-201ENST00000459540 60 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 AC074133.1-201ENST00000515696 183 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.715-201ENST00000517082 110 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 RNU2-12P-201ENST00000517216 168 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 AC025647.1-201ENST00000517879 253 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 HSPE1P19-201ENST00000603327 295 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 AC005828.6-201ENST00000606610 232 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.812-201ENST00000610788 101 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 MIR6078-201ENST00000611069 100 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.784-201ENST00000613803 101 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.787-201ENST00000616522 101 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.780-201ENST00000617336 101 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.801-201ENST00000619005 101 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 AC012676.2-201ENST00000619258 186 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 AC006001.4-201ENST00000622243 395 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 AL078596.1-201ENST00000624856 447 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 snoZ196.1-201ENST00000625269 89 ntBASIC1.2□□□□□ -2.22
ZNF540Q8NDQ6 RNU4-13P-201ENST00000364019 141 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.287-201ENST00000364853 94 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-806P-201ENST00000365147 105 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 SNORD14.1-201ENST00000365609 90 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms