Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SNORD114-7-201ENST00000362520 77 ntBASIC1.04□□□□□ -2.24
SKA3Q8IX90 Y_RNA.101-201ENST00000363154 102 ntBASIC1.04□□□□□ -2.24
SKA3Q8IX90 RNU4-76P-201ENST00000364509 141 ntBASIC1.04□□□□□ -2.24
SKA3Q8IX90 SNORA25.8-201ENST00000364831 128 ntBASIC1.04□□□□□ -2.24
SKA3Q8IX90 RNY3P14-201ENST00000384309 102 ntBASIC1.04□□□□□ -2.24
SKA3Q8IX90 RNU6-136P-201ENST00000384663 107 ntBASIC1.04□□□□□ -2.24
SKA3Q8IX90 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
SKA3Q8IX90 U8.16-201ENST00000391279 133 ntBASIC1.04□□□□□ -2.24
SKA3Q8IX90 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.04□□□□□ -2.24
SKA3Q8IX90 RNU5A-5P-201ENST00000411054 116 ntBASIC1.04□□□□□ -2.24
SKA3Q8IX90 RPS29P28-201ENST00000446439 141 ntBASIC1.04□□□□□ -2.24
SKA3Q8IX90 SNORA70.12-201ENST00000516084 153 ntBASIC1.04□□□□□ -2.24
SKA3Q8IX90 RNU6-1337P-201ENST00000516525 95 ntBASIC1.04□□□□□ -2.24
SKA3Q8IX90 RNA5SP168-201ENST00000516642 112 ntBASIC1.04□□□□□ -2.24
SKA3Q8IX90 RN7SKP88-201ENST00000516847 250 ntBASIC1.04□□□□□ -2.24
SKA3Q8IX90 MIR4659A-201ENST00000580269 81 ntBASIC1.04□□□□□ -2.24
SKA3Q8IX90 VN1R91P-201ENST00000594377 169 ntBASIC1.04□□□□□ -2.24
SKA3Q8IX90 7SK.8-201ENST00000612110 250 ntBASIC1.04□□□□□ -2.24
SKA3Q8IX90 Y_RNA.804-201ENST00000615262 101 ntBASIC1.04□□□□□ -2.24
SKA3Q8IX90 7SK.11-201ENST00000615477 250 ntBASIC1.04□□□□□ -2.24
SKA3Q8IX90 7SK.13-201ENST00000622040 250 ntBASIC1.04□□□□□ -2.24
SKA3Q8IX90 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.04□□□□□ -2.24
SKA3Q8IX90 MIR4272-201ENST00000635924 64 ntBASIC1.04□□□□□ -2.24
SKA3Q8IX90 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.04□□□□□ -2.24
SKA3Q8IX90 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.04□□□□□ -2.24
SKA3Q8IX90 Y_RNA.58-201ENST00000362807 102 ntBASIC1.03□□□□□ -2.24
SKA3Q8IX90 Y_RNA.146-201ENST00000363549 102 ntBASIC1.03□□□□□ -2.24
SKA3Q8IX90 Y_RNA.154-201ENST00000363624 102 ntBASIC1.03□□□□□ -2.24
SKA3Q8IX90 Y_RNA.187-201ENST00000363918 113 ntBASIC1.03□□□□□ -2.24
SKA3Q8IX90 RNY3P1-201ENST00000365085 102 ntBASIC1.03□□□□□ -2.24
SKA3Q8IX90 RNY3-201ENST00000365484 102 ntBASIC1.03□□□□□ -2.24
SKA3Q8IX90 RNU6-20P-201ENST00000384106 107 ntBASIC1.03□□□□□ -2.24
SKA3Q8IX90 Y_RNA.496-201ENST00000384444 101 ntBASIC1.03□□□□□ -2.24
SKA3Q8IX90 RNU2-54P-201ENST00000410299 190 ntBASIC1.03□□□□□ -2.24
SKA3Q8IX90 AL354751.2-201ENST00000415471 210 ntBASIC1.03□□□□□ -2.24
SKA3Q8IX90 AC236972.2-201ENST00000434979 310 ntBASIC1.03□□□□□ -2.24
SKA3Q8IX90 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.03□□□□□ -2.24
SKA3Q8IX90 AC233266.1-201ENST00000454518 96 ntBASIC1.03□□□□□ -2.24
SKA3Q8IX90 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC1.03□□□□□ -2.24
SKA3Q8IX90 AL163540.1-201ENST00000485382 386 ntBASIC1.03□□□□□ -2.24
SKA3Q8IX90 AC093852.1-201ENST00000503587 266 ntBASIC1.03□□□□□ -2.24
SKA3Q8IX90 Y_RNA.661-201ENST00000516003 99 ntBASIC1.03□□□□□ -2.24
SKA3Q8IX90 RNU6-155P-201ENST00000516347 100 ntBASIC1.03□□□□□ -2.24
SKA3Q8IX90 RNU6-922P-201ENST00000516753 99 ntBASIC1.03□□□□□ -2.24
SKA3Q8IX90 RNU7-28P-201ENST00000516759 62 ntBASIC1.03□□□□□ -2.24
SKA3Q8IX90 SNORD116.3-201ENST00000517176 78 ntBASIC1.03□□□□□ -2.24
SKA3Q8IX90 AC242852.1-201ENST00000612151 96 ntBASIC1.03□□□□□ -2.24
SKA3Q8IX90 AC244015.1-201ENST00000622301 99 ntBASIC1.03□□□□□ -2.24
SKA3Q8IX90 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.03□□□□□ -2.25
SKA3Q8IX90 RNU6-199P-201ENST00000362954 107 ntBASIC1.02□□□□□ -2.25
SKA3Q8IX90 RNU6-324P-201ENST00000363957 106 ntBASIC1.02□□□□□ -2.25
SKA3Q8IX90 SNORA22-201ENST00000383907 134 ntBASIC1.02□□□□□ -2.25
SKA3Q8IX90 SNORD116-13-201ENST00000384408 92 ntBASIC1.02□□□□□ -2.25
SKA3Q8IX90 SNORA22C-201ENST00000384614 134 ntBASIC1.02□□□□□ -2.25
SKA3Q8IX90 MIR618-201ENST00000385287 98 ntBASIC1.02□□□□□ -2.25
SKA3Q8IX90 RNA5SP482-201ENST00000391269 118 ntBASIC1.02□□□□□ -2.25
SKA3Q8IX90 AF228730.4-201ENST00000421457 183 ntBASIC1.02□□□□□ -2.25
SKA3Q8IX90 HSPE1P13-201ENST00000451143 297 ntBASIC1.02□□□□□ -2.25
SKA3Q8IX90 RNU6-966P-201ENST00000516479 104 ntBASIC1.02□□□□□ -2.25
SKA3Q8IX90 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC1.02□□□□□ -2.25
SKA3Q8IX90 MIR3664-201ENST00000579074 99 ntBASIC1.02□□□□□ -2.25
SKA3Q8IX90 AC104985.2-201ENST00000620598 500 ntBASIC1.02□□□□□ -2.25
SKA3Q8IX90 AC068647.2-201ENST00000637380 353 ntBASIC1.02□□□□□ -2.25
SKA3Q8IX90 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.02□□□□□ -2.25
SKA3Q8IX90 RNU6-626P-201ENST00000363354 107 ntBASIC1.01□□□□□ -2.25
SKA3Q8IX90 RNU4-41P-201ENST00000364426 143 ntBASIC1.01□□□□□ -2.25
SKA3Q8IX90 Y_RNA.327-201ENST00000365201 102 ntBASIC1.01□□□□□ -2.25
SKA3Q8IX90 Y_RNA.446-201ENST00000384178 104 ntBASIC1.01□□□□□ -2.25
SKA3Q8IX90 RNA5SP511-201ENST00000410487 115 ntBASIC1.01□□□□□ -2.25
SKA3Q8IX90 RPS4XP11-201ENST00000446897 772 ntBASIC1.01□□□□□ -2.25
SKA3Q8IX90 AL049830.1-201ENST00000468034 425 ntBASIC1.01□□□□□ -2.25
SKA3Q8IX90 MTND3P22-201ENST00000510932 243 ntBASIC1.01□□□□□ -2.25
SKA3Q8IX90 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.01□□□□□ -2.25
SKA3Q8IX90 RAB11AP2-201ENST00000545905 639 ntBASIC1.01□□□□□ -2.25
SKA3Q8IX90 MIR6078-201ENST00000611069 100 ntBASIC1.01□□□□□ -2.25
SKA3Q8IX90 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1□□□□□ -2.25
SKA3Q8IX90 RNA5SP327-201ENST00000362494 101 ntBASIC1□□□□□ -2.25
SKA3Q8IX90 Y_RNA.39-201ENST00000362620 98 ntBASIC1□□□□□ -2.25
SKA3Q8IX90 Y_RNA.230-201ENST00000364348 109 ntBASIC1□□□□□ -2.25
SKA3Q8IX90 RNU6-1080P-201ENST00000383982 107 ntBASIC1□□□□□ -2.25
SKA3Q8IX90 RNU2-61P-201ENST00000411069 191 ntBASIC1□□□□□ -2.25
SKA3Q8IX90 AL162725.1-201ENST00000435405 301 ntBASIC1□□□□□ -2.25
SKA3Q8IX90 RPEP5-201ENST00000441137 268 ntBASIC1□□□□□ -2.25
SKA3Q8IX90 DYNLT3P2-201ENST00000442517 295 ntBASIC1□□□□□ -2.25
SKA3Q8IX90 AC093850.1-201ENST00000454121 251 ntBASIC1□□□□□ -2.25
SKA3Q8IX90 RNU6-917P-201ENST00000516294 104 ntBASIC1□□□□□ -2.25
SKA3Q8IX90 RNU6-165P-201ENST00000517170 99 ntBASIC1□□□□□ -2.25
SKA3Q8IX90 AL358944.1-201ENST00000528537 144 ntBASIC1□□□□□ -2.25
SKA3Q8IX90 MIR4498-201ENST00000577599 66 ntBASIC1□□□□□ -2.25
SKA3Q8IX90 AC092447.9-201ENST00000603395 144 ntBASIC1□□□□□ -2.25
SKA3Q8IX90 MIR8065-201ENST00000620577 100 ntBASIC1□□□□□ -2.25
SKA3Q8IX90 AC091925.1-201ENST00000623204 462 ntBASIC1□□□□□ -2.25
SKA3Q8IX90 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1□□□□□ -2.25
SKA3Q8IX90 MIRLET7C-201ENST00000362160 84 ntBASIC0.99□□□□□ -2.25
SKA3Q8IX90 RNU4-73P-201ENST00000363164 141 ntBASIC0.99□□□□□ -2.25
SKA3Q8IX90 RNU6-1175P-201ENST00000365200 107 ntBASIC0.99□□□□□ -2.25
SKA3Q8IX90 Y_RNA.570-201ENST00000384750 101 ntBASIC0.99□□□□□ -2.25
SKA3Q8IX90 SNORD41-201ENST00000386967 70 ntBASIC0.99□□□□□ -2.25
SKA3Q8IX90 Y_RNA.621-201ENST00000411065 96 ntBASIC0.99□□□□□ -2.25
SKA3Q8IX90 RNU6-1199P-201ENST00000411249 104 ntBASIC0.99□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 197.1 ms