Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MIR6895-201ENST00000613497 78 ntBASIC2.21□□□□□ -2.06
PTCHD3Q3KNS1 MIR203B-201ENST00000636080 86 ntBASIC2.21□□□□□ -2.06
PTCHD3Q3KNS1 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.21□□□□□ -2.06
PTCHD3Q3KNS1 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
PTCHD3Q3KNS1 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
PTCHD3Q3KNS1 RNU6-862P-201ENST00000362804 105 ntBASIC2.2□□□□□ -2.06
PTCHD3Q3KNS1 Y_RNA.199-201ENST00000364014 102 ntBASIC2.2□□□□□ -2.06
PTCHD3Q3KNS1 SNORD116-13-201ENST00000384408 92 ntBASIC2.2□□□□□ -2.06
PTCHD3Q3KNS1 MIR1298-201ENST00000408783 112 ntBASIC2.2□□□□□ -2.06
PTCHD3Q3KNS1 SNORA11.4-201ENST00000408823 129 ntBASIC2.2□□□□□ -2.06
PTCHD3Q3KNS1 RNA5SP511-201ENST00000410487 115 ntBASIC2.2□□□□□ -2.06
PTCHD3Q3KNS1 Y_RNA.626-201ENST00000411288 95 ntBASIC2.2□□□□□ -2.06
PTCHD3Q3KNS1 U8.19-201ENST00000459095 133 ntBASIC2.2□□□□□ -2.06
PTCHD3Q3KNS1 RNU7-141P-201ENST00000459304 62 ntBASIC2.2□□□□□ -2.06
PTCHD3Q3KNS1 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.2□□□□□ -2.06
PTCHD3Q3KNS1 SNORD116-28-201ENST00000516123 91 ntBASIC2.2□□□□□ -2.06
PTCHD3Q3KNS1 RNU7-115P-201ENST00000516433 55 ntBASIC2.2□□□□□ -2.06
PTCHD3Q3KNS1 RNU7-128P-201ENST00000517247 62 ntBASIC2.2□□□□□ -2.06
PTCHD3Q3KNS1 AC015720.1-201ENST00000565251 277 ntBASIC2.2□□□□□ -2.06
PTCHD3Q3KNS1 AP003357.1-201ENST00000604497 148 ntBASIC2.2□□□□□ -2.06
PTCHD3Q3KNS1 AC245884.12-201ENST00000615364 59 ntBASIC2.2□□□□□ -2.06
PTCHD3Q3KNS1 MIR6715A-201ENST00000615929 79 ntBASIC2.2□□□□□ -2.06
PTCHD3Q3KNS1 U6.108-201ENST00000637764 58 ntBASIC2.2□□□□□ -2.06
PTCHD3Q3KNS1 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
PTCHD3Q3KNS1 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
PTCHD3Q3KNS1 Y_RNA.83-201ENST00000363005 113 ntBASIC2.19□□□□□ -2.06
PTCHD3Q3KNS1 U8.7-201ENST00000364940 136 ntBASIC2.19□□□□□ -2.06
PTCHD3Q3KNS1 Y_RNA.785-201ENST00000384290 109 ntBASIC2.19□□□□□ -2.06
PTCHD3Q3KNS1 MIR562-201ENST00000384894 95 ntBASIC2.19□□□□□ -2.06
PTCHD3Q3KNS1 RNU6-907P-201ENST00000390924 102 ntBASIC2.19□□□□□ -2.06
PTCHD3Q3KNS1 RNU11-3P-201ENST00000391111 133 ntBASIC2.19□□□□□ -2.06
PTCHD3Q3KNS1 RNA5SP467-201ENST00000391274 118 ntBASIC2.19□□□□□ -2.06
PTCHD3Q3KNS1 AC099677.2-201ENST00000436385 175 ntBASIC2.19□□□□□ -2.06
PTCHD3Q3KNS1 HSPE1P21-201ENST00000438283 308 ntBASIC2.19□□□□□ -2.06
PTCHD3Q3KNS1 RNU7-94P-201ENST00000459576 63 ntBASIC2.19□□□□□ -2.06
PTCHD3Q3KNS1 RPS26P45-201ENST00000471748 340 ntBASIC2.19□□□□□ -2.06
PTCHD3Q3KNS1 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.19□□□□□ -2.06
PTCHD3Q3KNS1 AC130289.1-201ENST00000577321 73 ntBASIC2.19□□□□□ -2.06
PTCHD3Q3KNS1 MIR6873-201ENST00000622788 63 ntBASIC2.19□□□□□ -2.06
PTCHD3Q3KNS1 AC022513.1-201ENST00000624512 117 ntBASIC2.19□□□□□ -2.06
PTCHD3Q3KNS1 AC068647.2-201ENST00000637380 353 ntBASIC2.19□□□□□ -2.06
PTCHD3Q3KNS1 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
PTCHD3Q3KNS1 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
PTCHD3Q3KNS1 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.18□□□□□ -2.06
PTCHD3Q3KNS1 RNU4-13P-201ENST00000364019 141 ntBASIC2.18□□□□□ -2.06
PTCHD3Q3KNS1 SNORA3A-201ENST00000364113 130 ntBASIC2.18□□□□□ -2.06
PTCHD3Q3KNS1 Y_RNA.262-201ENST00000364641 102 ntBASIC2.18□□□□□ -2.06
PTCHD3Q3KNS1 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.18□□□□□ -2.06
PTCHD3Q3KNS1 RNU6-376P-201ENST00000384731 106 ntBASIC2.18□□□□□ -2.06
PTCHD3Q3KNS1 MTCO2P33-201ENST00000402100 465 ntBASIC2.18□□□□□ -2.06
PTCHD3Q3KNS1 RNU6-1186P-201ENST00000410429 97 ntBASIC2.18□□□□□ -2.06
PTCHD3Q3KNS1 RN7SKP192-201ENST00000411291 327 ntBASIC2.18□□□□□ -2.06
PTCHD3Q3KNS1 AL356320.1-201ENST00000429616 163 ntBASIC2.18□□□□□ -2.06
PTCHD3Q3KNS1 RNU6-63P-201ENST00000516690 95 ntBASIC2.18□□□□□ -2.06
PTCHD3Q3KNS1 SNORA31.25-201ENST00000517242 134 ntBASIC2.18□□□□□ -2.06
PTCHD3Q3KNS1 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.18□□□□□ -2.06
PTCHD3Q3KNS1 MIR5694-201ENST00000581190 76 ntBASIC2.18□□□□□ -2.06
PTCHD3Q3KNS1 MIR548AY-201ENST00000617669 107 ntBASIC2.18□□□□□ -2.06
PTCHD3Q3KNS1 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 SNORA72-201ENST00000384339 132 ntBASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 MIR520G-201ENST00000385064 90 ntBASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 RNA5SP323-201ENST00000391094 133 ntBASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 HMGN2P3-201ENST00000433603 273 ntBASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 HMGN2P5-201ENST00000436882 273 ntBASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 MTND2P29-201ENST00000438595 412 ntBASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 AL138752.1-201ENST00000452964 351 ntBASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 RNU6-138P-201ENST00000515952 107 ntBASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 MIR4529-201ENST00000578110 78 ntBASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 MIR4648-201ENST00000580107 72 ntBASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 AC104984.5-201ENST00000586878 94 ntBASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 POLR3GP1-201ENST00000594073 261 ntBASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 Z83818.1-201ENST00000603584 150 ntBASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 AL365265.1-201ENST00000621045 234 ntBASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.17□□□□□ -2.06
PTCHD3Q3KNS1 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
PTCHD3Q3KNS1 AC134026.1-201ENST00000623249 2239 ntBASIC2.16□□□□□ -2.06
PTCHD3Q3KNS1 RNU6-1048P-201ENST00000364054 107 ntBASIC2.16□□□□□ -2.06
PTCHD3Q3KNS1 MIR221-201ENST00000385135 110 ntBASIC2.16□□□□□ -2.06
PTCHD3Q3KNS1 AC117454.1-201ENST00000491120 168 ntBASIC2.16□□□□□ -2.06
PTCHD3Q3KNS1 AL358944.1-201ENST00000528537 144 ntBASIC2.16□□□□□ -2.06
PTCHD3Q3KNS1 AC024405.2-202ENST00000532731 184 ntBASIC2.16□□□□□ -2.06
PTCHD3Q3KNS1 AC121758.2-201ENST00000553271 193 ntBASIC2.16□□□□□ -2.06
PTCHD3Q3KNS1 AC127455.1-201ENST00000565496 145 ntBASIC2.16□□□□□ -2.06
PTCHD3Q3KNS1 MIR1273D-201ENST00000577266 86 ntBASIC2.16□□□□□ -2.06
PTCHD3Q3KNS1 AC091178.2-201ENST00000584401 117 ntBASIC2.16□□□□□ -2.06
PTCHD3Q3KNS1 AC073413.2-201ENST00000604332 360 ntBASIC2.16□□□□□ -2.06
PTCHD3Q3KNS1 U1.36-201ENST00000620684 176 ntBASIC2.16□□□□□ -2.06
PTCHD3Q3KNS1 AC009831.4-201ENST00000620744 325 ntBASIC2.16□□□□□ -2.06
PTCHD3Q3KNS1 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
PTCHD3Q3KNS1 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
PTCHD3Q3KNS1 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
PTCHD3Q3KNS1 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 174.8 ms