Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL163195.1-201ENST00000496941 348 ntBASIC1.82□□□□□ -2.12
COL28A1Q2UY09 AC025465.3-201ENST00000510570 311 ntBASIC1.82□□□□□ -2.12
COL28A1Q2UY09 RNU6-436P-201ENST00000516171 114 ntBASIC1.82□□□□□ -2.12
COL28A1Q2UY09 RNU6-966P-201ENST00000516479 104 ntBASIC1.82□□□□□ -2.12
COL28A1Q2UY09 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.82□□□□□ -2.12
COL28A1Q2UY09 SNORA31.17-201ENST00000516953 127 ntBASIC1.82□□□□□ -2.12
COL28A1Q2UY09 AC027419.1-201ENST00000522976 328 ntBASIC1.82□□□□□ -2.12
COL28A1Q2UY09 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.82□□□□□ -2.12
COL28A1Q2UY09 MIR4300-201ENST00000581016 96 ntBASIC1.82□□□□□ -2.12
COL28A1Q2UY09 AL512598.1-201ENST00000610158 273 ntBASIC1.82□□□□□ -2.12
COL28A1Q2UY09 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.82□□□□□ -2.12
COL28A1Q2UY09 AC131280.1-202ENST00000624067 4211 ntBASIC1.81□□□□□ -2.12
COL28A1Q2UY09 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
COL28A1Q2UY09 Y_RNA.153-201ENST00000363615 91 ntBASIC1.81□□□□□ -2.12
COL28A1Q2UY09 Y_RNA.331-201ENST00000365267 102 ntBASIC1.81□□□□□ -2.12
COL28A1Q2UY09 RNU6-407P-201ENST00000365280 104 ntBASIC1.81□□□□□ -2.12
COL28A1Q2UY09 RNU6-1160P-201ENST00000384546 104 ntBASIC1.81□□□□□ -2.12
COL28A1Q2UY09 SNORA67.5-201ENST00000391036 107 ntBASIC1.81□□□□□ -2.12
COL28A1Q2UY09 RNU6-1186P-201ENST00000410429 97 ntBASIC1.81□□□□□ -2.12
COL28A1Q2UY09 AC004965.1-201ENST00000413033 213 ntBASIC1.81□□□□□ -2.12
COL28A1Q2UY09 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.81□□□□□ -2.12
COL28A1Q2UY09 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.81□□□□□ -2.12
COL28A1Q2UY09 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.81□□□□□ -2.12
COL28A1Q2UY09 SEPT14P8-201ENST00000508026 178 ntBASIC1.81□□□□□ -2.12
COL28A1Q2UY09 RNU6-1143P-201ENST00000516125 104 ntBASIC1.81□□□□□ -2.12
COL28A1Q2UY09 RNU6-1278P-201ENST00000516130 107 ntBASIC1.81□□□□□ -2.12
COL28A1Q2UY09 RNU7-110P-201ENST00000516891 62 ntBASIC1.81□□□□□ -2.12
COL28A1Q2UY09 RNU7-172P-201ENST00000517125 64 ntBASIC1.81□□□□□ -2.12
COL28A1Q2UY09 RNA5SP437-201ENST00000517249 129 ntBASIC1.81□□□□□ -2.12
COL28A1Q2UY09 AC131281.1-201ENST00000522984 164 ntBASIC1.81□□□□□ -2.12
COL28A1Q2UY09 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.81□□□□□ -2.12
COL28A1Q2UY09 AC011604.1-201ENST00000545978 196 ntBASIC1.81□□□□□ -2.12
COL28A1Q2UY09 MIR5089-201ENST00000580047 84 ntBASIC1.81□□□□□ -2.12
COL28A1Q2UY09 SNORD113-5-201ENST00000607261 78 ntBASIC1.81□□□□□ -2.12
COL28A1Q2UY09 Y_RNA.124-201ENST00000363339 93 ntBASIC1.8□□□□□ -2.12
COL28A1Q2UY09 RNU6-392P-201ENST00000364926 101 ntBASIC1.8□□□□□ -2.12
COL28A1Q2UY09 RNU6-505P-201ENST00000384427 107 ntBASIC1.8□□□□□ -2.12
COL28A1Q2UY09 RNU6-360P-201ENST00000390944 104 ntBASIC1.8□□□□□ -2.12
COL28A1Q2UY09 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.8□□□□□ -2.12
COL28A1Q2UY09 RPS27P1-201ENST00000450552 247 ntBASIC1.8□□□□□ -2.12
COL28A1Q2UY09 AC010655.3-201ENST00000478818 450 ntBASIC1.8□□□□□ -2.12
COL28A1Q2UY09 RNU6-1046P-201ENST00000516538 107 ntBASIC1.8□□□□□ -2.12
COL28A1Q2UY09 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.8□□□□□ -2.12
COL28A1Q2UY09 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.8□□□□□ -2.12
COL28A1Q2UY09 MIR376A1-201ENST00000616574 68 ntBASIC1.8□□□□□ -2.12
COL28A1Q2UY09 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.8□□□□□ -2.12
COL28A1Q2UY09 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.8□□□□□ -2.12
COL28A1Q2UY09 AC018630.2-201ENST00000534866 2403 ntBASIC1.79□□□□□ -2.12
COL28A1Q2UY09 Y_RNA.214-201ENST00000364201 112 ntBASIC1.79□□□□□ -2.12
COL28A1Q2UY09 Y_RNA.222-201ENST00000364264 102 ntBASIC1.79□□□□□ -2.12
COL28A1Q2UY09 RNU6-950P-201ENST00000384651 107 ntBASIC1.79□□□□□ -2.12
COL28A1Q2UY09 RNU6-21P-201ENST00000384710 107 ntBASIC1.79□□□□□ -2.12
COL28A1Q2UY09 MIR562-201ENST00000384894 95 ntBASIC1.79□□□□□ -2.12
COL28A1Q2UY09 RNU6-710P-201ENST00000410424 105 ntBASIC1.79□□□□□ -2.12
COL28A1Q2UY09 RNA5SP489-201ENST00000410986 109 ntBASIC1.79□□□□□ -2.12
COL28A1Q2UY09 RNU6-397P-201ENST00000516226 104 ntBASIC1.79□□□□□ -2.12
COL28A1Q2UY09 SNORA40.15-201ENST00000516884 107 ntBASIC1.79□□□□□ -2.12
COL28A1Q2UY09 MIR3122-201ENST00000577243 73 ntBASIC1.79□□□□□ -2.12
COL28A1Q2UY09 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.79□□□□□ -2.12
COL28A1Q2UY09 SNRPGP19-201ENST00000603826 189 ntBASIC1.79□□□□□ -2.12
COL28A1Q2UY09 AC127459.3-201ENST00000624328 466 ntBASIC1.79□□□□□ -2.12
COL28A1Q2UY09 SNORD81.1-201ENST00000363064 77 ntBASIC1.78□□□□□ -2.12
COL28A1Q2UY09 RNU6-770P-201ENST00000363929 105 ntBASIC1.78□□□□□ -2.12
COL28A1Q2UY09 Y_RNA.210-201ENST00000364161 110 ntBASIC1.78□□□□□ -2.12
COL28A1Q2UY09 RNU2-7P-201ENST00000410794 178 ntBASIC1.78□□□□□ -2.12
COL28A1Q2UY09 HSPE1P9-201ENST00000440046 311 ntBASIC1.78□□□□□ -2.12
COL28A1Q2UY09 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.78□□□□□ -2.12
COL28A1Q2UY09 RPL21P9-201ENST00000556149 474 ntBASIC1.78□□□□□ -2.12
COL28A1Q2UY09 AC073413.2-201ENST00000604332 360 ntBASIC1.78□□□□□ -2.12
COL28A1Q2UY09 AC022217.4-201ENST00000604389 163 ntBASIC1.78□□□□□ -2.12
COL28A1Q2UY09 AC103810.8-201ENST00000607347 118 ntBASIC1.78□□□□□ -2.12
COL28A1Q2UY09 RNU6-324P-201ENST00000363957 106 ntBASIC1.77□□□□□ -2.13
COL28A1Q2UY09 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
COL28A1Q2UY09 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
COL28A1Q2UY09 Y_RNA.581-201ENST00000391017 97 ntBASIC1.77□□□□□ -2.13
COL28A1Q2UY09 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.77□□□□□ -2.13
COL28A1Q2UY09 ELOCP20-201ENST00000422460 345 ntBASIC1.77□□□□□ -2.13
COL28A1Q2UY09 FTH1P12-201ENST00000432137 551 ntBASIC1.77□□□□□ -2.13
COL28A1Q2UY09 HMGB3P17-201ENST00000504195 649 ntBASIC1.77□□□□□ -2.13
COL28A1Q2UY09 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.77□□□□□ -2.13
COL28A1Q2UY09 RNU6-250P-201ENST00000516958 103 ntBASIC1.77□□□□□ -2.13
COL28A1Q2UY09 AC091178.2-201ENST00000584401 117 ntBASIC1.77□□□□□ -2.13
COL28A1Q2UY09 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.77□□□□□ -2.13
COL28A1Q2UY09 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.77□□□□□ -2.13
COL28A1Q2UY09 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.77□□□□□ -2.13
COL28A1Q2UY09 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
COL28A1Q2UY09 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
COL28A1Q2UY09 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.76□□□□□ -2.13
COL28A1Q2UY09 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.76□□□□□ -2.13
COL28A1Q2UY09 SNORD113-8-201ENST00000363497 74 ntBASIC1.76□□□□□ -2.13
COL28A1Q2UY09 Y_RNA.145-201ENST00000363527 102 ntBASIC1.76□□□□□ -2.13
COL28A1Q2UY09 SNORA63C-201ENST00000364578 129 ntBASIC1.76□□□□□ -2.13
COL28A1Q2UY09 Y_RNA.329-201ENST00000365209 107 ntBASIC1.76□□□□□ -2.13
COL28A1Q2UY09 MIR606-201ENST00000384851 96 ntBASIC1.76□□□□□ -2.13
COL28A1Q2UY09 RNU4-30P-201ENST00000410245 143 ntBASIC1.76□□□□□ -2.13
COL28A1Q2UY09 RNU6-121P-201ENST00000410525 99 ntBASIC1.76□□□□□ -2.13
COL28A1Q2UY09 AC024067.1-201ENST00000426199 223 ntBASIC1.76□□□□□ -2.13
COL28A1Q2UY09 AL731563.1-201ENST00000442202 214 ntBASIC1.76□□□□□ -2.13
COL28A1Q2UY09 AL606517.2-201ENST00000442855 241 ntBASIC1.76□□□□□ -2.13
COL28A1Q2UY09 MRPS35P2-201ENST00000508242 191 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms