Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AL162725.1-201ENST00000435405 301 ntBASIC0.83□□□□□ -2.28
PKNOX1P55347 AC092473.1-201ENST00000441098 221 ntBASIC0.83□□□□□ -2.28
PKNOX1P55347 RPS4XP11-201ENST00000446897 772 ntBASIC0.83□□□□□ -2.28
PKNOX1P55347 Y_RNA.635-201ENST00000459041 101 ntBASIC0.83□□□□□ -2.28
PKNOX1P55347 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.83□□□□□ -2.28
PKNOX1P55347 RNU4ATAC7P-201ENST00000516280 125 ntBASIC0.83□□□□□ -2.28
PKNOX1P55347 MTND4LP26-201ENST00000518144 282 ntBASIC0.83□□□□□ -2.28
PKNOX1P55347 MIR4298-201ENST00000584380 73 ntBASIC0.83□□□□□ -2.28
PKNOX1P55347 FAM106DP-201ENST00000586416 501 ntBASIC0.83□□□□□ -2.28
PKNOX1P55347 AC120024.3-201ENST00000603167 156 ntBASIC0.83□□□□□ -2.28
PKNOX1P55347 FAM71BP1-201ENST00000604431 523 ntBASIC0.83□□□□□ -2.28
PKNOX1P55347 snoU13.31-201ENST00000607291 104 ntBASIC0.83□□□□□ -2.28
PKNOX1P55347 MIR6857-201ENST00000613267 93 ntBASIC0.83□□□□□ -2.28
PKNOX1P55347 AL008636.1-201ENST00000625038 1018 ntBASIC0.83□□□□□ -2.28
PKNOX1P55347 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
PKNOX1P55347 Y_RNA.101-201ENST00000363154 102 ntBASIC0.82□□□□□ -2.28
PKNOX1P55347 RNU6-392P-201ENST00000364926 101 ntBASIC0.82□□□□□ -2.28
PKNOX1P55347 RNU6-1080P-201ENST00000383982 107 ntBASIC0.82□□□□□ -2.28
PKNOX1P55347 RNU6-926P-201ENST00000384075 107 ntBASIC0.82□□□□□ -2.28
PKNOX1P55347 SNORD116-13-201ENST00000384408 92 ntBASIC0.82□□□□□ -2.28
PKNOX1P55347 SNORA69.1-201ENST00000390904 137 ntBASIC0.82□□□□□ -2.28
PKNOX1P55347 SNORA75.6-201ENST00000391318 127 ntBASIC0.82□□□□□ -2.28
PKNOX1P55347 MIR891A-201ENST00000401237 79 ntBASIC0.82□□□□□ -2.28
PKNOX1P55347 FGF7P8-201ENST00000402994 292 ntBASIC0.82□□□□□ -2.28
PKNOX1P55347 RNU6-1156P-201ENST00000410365 100 ntBASIC0.82□□□□□ -2.28
PKNOX1P55347 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC0.82□□□□□ -2.28
PKNOX1P55347 RPEP5-201ENST00000441137 268 ntBASIC0.82□□□□□ -2.28
PKNOX1P55347 RPL39P39-201ENST00000455840 151 ntBASIC0.82□□□□□ -2.28
PKNOX1P55347 RPL30P15-201ENST00000457129 321 ntBASIC0.82□□□□□ -2.28
PKNOX1P55347 CYCTP-201ENST00000504253 315 ntBASIC0.82□□□□□ -2.28
PKNOX1P55347 RNU6-351P-201ENST00000516097 100 ntBASIC0.82□□□□□ -2.28
PKNOX1P55347 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.82□□□□□ -2.28
PKNOX1P55347 WT1-AS_8.1-201ENST00000615200 275 ntBASIC0.82□□□□□ -2.28
PKNOX1P55347 TPTEP1-208ENST00000636884 213 ntBASIC0.82□□□□□ -2.28
PKNOX1P55347 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
PKNOX1P55347 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.81□□□□□ -2.28
PKNOX1P55347 RNU1-36P-201ENST00000365130 165 ntBASIC0.81□□□□□ -2.28
PKNOX1P55347 SNORD81.2-201ENST00000365153 76 ntBASIC0.81□□□□□ -2.28
PKNOX1P55347 SNORA80D-201ENST00000384488 135 ntBASIC0.81□□□□□ -2.28
PKNOX1P55347 MIR625-201ENST00000385047 85 ntBASIC0.81□□□□□ -2.28
PKNOX1P55347 MT-TL1-201ENST00000386347 75 ntBASIC0.81□□□□□ -2.28
PKNOX1P55347 AL031003.1-201ENST00000404229 172 ntBASIC0.81□□□□□ -2.28
PKNOX1P55347 PIGPP3-201ENST00000425307 415 ntBASIC0.81□□□□□ -2.28
PKNOX1P55347 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.81□□□□□ -2.28
PKNOX1P55347 AC093019.1-201ENST00000443135 252 ntBASIC0.81□□□□□ -2.28
PKNOX1P55347 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.81□□□□□ -2.28
PKNOX1P55347 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.81□□□□□ -2.28
PKNOX1P55347 SNORD111.1-201ENST00000516421 86 ntBASIC0.81□□□□□ -2.28
PKNOX1P55347 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC0.81□□□□□ -2.28
PKNOX1P55347 PRELID3BP2-201ENST00000605362 201 ntBASIC0.81□□□□□ -2.28
PKNOX1P55347 AC240442.1-201ENST00000616055 283 ntBASIC0.81□□□□□ -2.28
PKNOX1P55347 AL591926.4-201ENST00000616895 298 ntBASIC0.81□□□□□ -2.28
PKNOX1P55347 AC027279.3-201ENST00000625055 122 ntBASIC0.81□□□□□ -2.28
PKNOX1P55347 Y_RNA.172-201ENST00000363765 102 ntBASIC0.8□□□□□ -2.28
PKNOX1P55347 RNY3P11-201ENST00000364153 102 ntBASIC0.8□□□□□ -2.28
PKNOX1P55347 Y_RNA.248-201ENST00000364501 109 ntBASIC0.8□□□□□ -2.28
PKNOX1P55347 Y_RNA.336-201ENST00000365307 109 ntBASIC0.8□□□□□ -2.28
PKNOX1P55347 RNU6-890P-201ENST00000384121 107 ntBASIC0.8□□□□□ -2.28
PKNOX1P55347 MIR200A-201ENST00000384875 90 ntBASIC0.8□□□□□ -2.28
PKNOX1P55347 MIR146A-201ENST00000385201 99 ntBASIC0.8□□□□□ -2.28
PKNOX1P55347 SNORA75.2-201ENST00000391138 150 ntBASIC0.8□□□□□ -2.28
PKNOX1P55347 SNORA75.3-201ENST00000391231 150 ntBASIC0.8□□□□□ -2.28
PKNOX1P55347 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.8□□□□□ -2.28
PKNOX1P55347 RNU6-1199P-201ENST00000411249 104 ntBASIC0.8□□□□□ -2.28
PKNOX1P55347 RNU6-1304P-201ENST00000411374 106 ntBASIC0.8□□□□□ -2.28
PKNOX1P55347 LINC01399-202ENST00000458450 244 ntBASIC0.8□□□□□ -2.28
PKNOX1P55347 RNU7-21P-201ENST00000459430 62 ntBASIC0.8□□□□□ -2.28
PKNOX1P55347 AC114811.1-201ENST00000507207 168 ntBASIC0.8□□□□□ -2.28
PKNOX1P55347 RNA5SP458-201ENST00000516188 119 ntBASIC0.8□□□□□ -2.28
PKNOX1P55347 RNU6-966P-201ENST00000516479 104 ntBASIC0.8□□□□□ -2.28
PKNOX1P55347 MIR3192-201ENST00000584920 77 ntBASIC0.8□□□□□ -2.28
PKNOX1P55347 AL391903.3-201ENST00000612158 163 ntBASIC0.8□□□□□ -2.28
PKNOX1P55347 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC0.8□□□□□ -2.28
PKNOX1P55347 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.79□□□□□ -2.28
PKNOX1P55347 SNORD68-201ENST00000363214 84 ntBASIC0.79□□□□□ -2.28
PKNOX1P55347 U8.5-201ENST00000364528 136 ntBASIC0.79□□□□□ -2.28
PKNOX1P55347 SNORD114-24-201ENST00000365029 72 ntBASIC0.79□□□□□ -2.28
PKNOX1P55347 Y_RNA.474-201ENST00000384341 102 ntBASIC0.79□□□□□ -2.28
PKNOX1P55347 RNU6-163P-201ENST00000384396 106 ntBASIC0.79□□□□□ -2.28
PKNOX1P55347 RNY3P4-201ENST00000384428 101 ntBASIC0.79□□□□□ -2.28
PKNOX1P55347 RNU2-54P-201ENST00000410299 190 ntBASIC0.79□□□□□ -2.28
PKNOX1P55347 Y_RNA.599-201ENST00000410489 109 ntBASIC0.79□□□□□ -2.28
PKNOX1P55347 MRPS18CP6-201ENST00000423587 223 ntBASIC0.79□□□□□ -2.28
PKNOX1P55347 AC245047.8-201ENST00000456455 284 ntBASIC0.79□□□□□ -2.28
PKNOX1P55347 SNORA25.10-201ENST00000515926 124 ntBASIC0.79□□□□□ -2.28
PKNOX1P55347 SNORA70.12-201ENST00000516084 153 ntBASIC0.79□□□□□ -2.28
PKNOX1P55347 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.79□□□□□ -2.28
PKNOX1P55347 MIR4762-201ENST00000585261 75 ntBASIC0.79□□□□□ -2.28
PKNOX1P55347 AC022306.2-201ENST00000617563 647 ntBASIC0.79□□□□□ -2.28
PKNOX1P55347 AC008163.1-202ENST00000636004 2889 ntBASIC0.79□□□□□ -2.28
PKNOX1P55347 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
PKNOX1P55347 RNU6-876P-201ENST00000391295 104 ntBASIC0.78□□□□□ -2.28
PKNOX1P55347 RNU2-61P-201ENST00000411069 191 ntBASIC0.78□□□□□ -2.28
PKNOX1P55347 MTND1P2-201ENST00000430604 821 ntBASIC0.78□□□□□ -2.28
PKNOX1P55347 FCF1P4-201ENST00000448326 183 ntBASIC0.78□□□□□ -2.28
PKNOX1P55347 MTCO3P10-201ENST00000455912 772 ntBASIC0.78□□□□□ -2.28
PKNOX1P55347 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.78□□□□□ -2.28
PKNOX1P55347 AC011604.1-201ENST00000545978 196 ntBASIC0.78□□□□□ -2.28
PKNOX1P55347 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC0.78□□□□□ -2.28
PKNOX1P55347 MIR4698-201ENST00000577795 80 ntBASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms