Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 U2.6-201ENST00000619225 191 ntBASIC1.98□□□□□ -2.09
PDLIM4P50479 U2.5-201ENST00000619465 191 ntBASIC1.98□□□□□ -2.09
PDLIM4P50479 U2.10-201ENST00000620268 191 ntBASIC1.98□□□□□ -2.09
PDLIM4P50479 AC012640.5-201ENST00000623897 319 ntBASIC1.98□□□□□ -2.09
PDLIM4P50479 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.98□□□□□ -2.09
PDLIM4P50479 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
PDLIM4P50479 AC134026.1-201ENST00000623249 2239 ntBASIC1.97□□□□□ -2.09
PDLIM4P50479 Y_RNA.99-201ENST00000363138 105 ntBASIC1.97□□□□□ -2.09
PDLIM4P50479 Y_RNA.124-201ENST00000363339 93 ntBASIC1.97□□□□□ -2.09
PDLIM4P50479 Y_RNA.441-201ENST00000384123 112 ntBASIC1.97□□□□□ -2.09
PDLIM4P50479 SNORD14D-201ENST00000384390 87 ntBASIC1.97□□□□□ -2.09
PDLIM4P50479 MIR626-201ENST00000385032 94 ntBASIC1.97□□□□□ -2.09
PDLIM4P50479 AL353689.1-201ENST00000438895 199 ntBASIC1.97□□□□□ -2.09
PDLIM4P50479 SUMO1P3-201ENST00000439961 304 ntBASIC1.97□□□□□ -2.09
PDLIM4P50479 RNU1-131P-201ENST00000458943 161 ntBASIC1.97□□□□□ -2.09
PDLIM4P50479 snoU13.15-201ENST00000459407 104 ntBASIC1.97□□□□□ -2.09
PDLIM4P50479 SNORA4.4-201ENST00000515921 135 ntBASIC1.97□□□□□ -2.09
PDLIM4P50479 RNA5SP20-201ENST00000515976 84 ntBASIC1.97□□□□□ -2.09
PDLIM4P50479 RNU6-1337P-201ENST00000516525 95 ntBASIC1.97□□□□□ -2.09
PDLIM4P50479 MIR514B-201ENST00000516774 80 ntBASIC1.97□□□□□ -2.09
PDLIM4P50479 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.97□□□□□ -2.09
PDLIM4P50479 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.97□□□□□ -2.09
PDLIM4P50479 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.97□□□□□ -2.09
PDLIM4P50479 AP003357.1-201ENST00000604497 148 ntBASIC1.97□□□□□ -2.09
PDLIM4P50479 AL353149.1-201ENST00000610667 244 ntBASIC1.97□□□□□ -2.09
PDLIM4P50479 MIR7843-201ENST00000622274 79 ntBASIC1.97□□□□□ -2.09
PDLIM4P50479 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
PDLIM4P50479 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
PDLIM4P50479 Y_RNA.7-201ENST00000362352 102 ntBASIC1.96□□□□□ -2.1
PDLIM4P50479 Y_RNA.308-201ENST00000365043 101 ntBASIC1.96□□□□□ -2.1
PDLIM4P50479 RNU4-17P-201ENST00000365598 141 ntBASIC1.96□□□□□ -2.1
PDLIM4P50479 RNU6-381P-201ENST00000391259 108 ntBASIC1.96□□□□□ -2.1
PDLIM4P50479 HMGN2P38-201ENST00000423806 265 ntBASIC1.96□□□□□ -2.1
PDLIM4P50479 RNU7-141P-201ENST00000459304 62 ntBASIC1.96□□□□□ -2.1
PDLIM4P50479 RPS27P21-201ENST00000486977 252 ntBASIC1.96□□□□□ -2.1
PDLIM4P50479 RNU6-991P-201ENST00000516168 107 ntBASIC1.96□□□□□ -2.1
PDLIM4P50479 RNY3P16-201ENST00000516338 101 ntBASIC1.96□□□□□ -2.1
PDLIM4P50479 RNU7-115P-201ENST00000516433 55 ntBASIC1.96□□□□□ -2.1
PDLIM4P50479 RNU6-861P-201ENST00000516745 106 ntBASIC1.96□□□□□ -2.1
PDLIM4P50479 RNU7-116P-201ENST00000516940 62 ntBASIC1.96□□□□□ -2.1
PDLIM4P50479 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
PDLIM4P50479 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.96□□□□□ -2.1
PDLIM4P50479 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.95□□□□□ -2.1
PDLIM4P50479 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
PDLIM4P50479 Y_RNA.75-201ENST00000362927 97 ntBASIC1.95□□□□□ -2.1
PDLIM4P50479 RNU1-96P-201ENST00000364163 162 ntBASIC1.95□□□□□ -2.1
PDLIM4P50479 RNU6-312P-201ENST00000364629 107 ntBASIC1.95□□□□□ -2.1
PDLIM4P50479 Y_RNA.571-201ENST00000384753 98 ntBASIC1.95□□□□□ -2.1
PDLIM4P50479 EDDM3CP-201ENST00000415977 425 ntBASIC1.95□□□□□ -2.1
PDLIM4P50479 AL392103.1-201ENST00000447000 198 ntBASIC1.95□□□□□ -2.1
PDLIM4P50479 AC090255.1-201ENST00000495779 349 ntBASIC1.95□□□□□ -2.1
PDLIM4P50479 Y_RNA.662-201ENST00000516028 97 ntBASIC1.95□□□□□ -2.1
PDLIM4P50479 MRPS18CP4-201ENST00000535821 231 ntBASIC1.95□□□□□ -2.1
PDLIM4P50479 MIR5007-201ENST00000583098 95 ntBASIC1.95□□□□□ -2.1
PDLIM4P50479 AC005972.2-201ENST00000604690 348 ntBASIC1.95□□□□□ -2.1
PDLIM4P50479 AC067747.1-201ENST00000608026 250 ntBASIC1.95□□□□□ -2.1
PDLIM4P50479 AC004832.4-201ENST00000608952 331 ntBASIC1.95□□□□□ -2.1
PDLIM4P50479 AC068700.1-201ENST00000565862 3754 ntBASIC1.95□□□□□ -2.1
PDLIM4P50479 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.95□□□□□ -2.1
PDLIM4P50479 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
PDLIM4P50479 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
PDLIM4P50479 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC1.94□□□□□ -2.1
PDLIM4P50479 RNU1-22P-201ENST00000363334 158 ntBASIC1.94□□□□□ -2.1
PDLIM4P50479 RNU6-103P-201ENST00000363686 107 ntBASIC1.94□□□□□ -2.1
PDLIM4P50479 Y_RNA.172-201ENST00000363765 102 ntBASIC1.94□□□□□ -2.1
PDLIM4P50479 Y_RNA.238-201ENST00000364441 102 ntBASIC1.94□□□□□ -2.1
PDLIM4P50479 RNU6-923P-201ENST00000364753 107 ntBASIC1.94□□□□□ -2.1
PDLIM4P50479 SNORA8.3-201ENST00000384679 139 ntBASIC1.94□□□□□ -2.1
PDLIM4P50479 RNU6-394P-201ENST00000410735 107 ntBASIC1.94□□□□□ -2.1
PDLIM4P50479 AL162725.1-201ENST00000435405 301 ntBASIC1.94□□□□□ -2.1
PDLIM4P50479 AC005840.1-201ENST00000498412 377 ntBASIC1.94□□□□□ -2.1
PDLIM4P50479 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.94□□□□□ -2.1
PDLIM4P50479 RN7SKP164-201ENST00000516138 266 ntBASIC1.94□□□□□ -2.1
PDLIM4P50479 RNU6-1146P-201ENST00000516282 102 ntBASIC1.94□□□□□ -2.1
PDLIM4P50479 AC022559.1-201ENST00000520905 205 ntBASIC1.94□□□□□ -2.1
PDLIM4P50479 CYCSP26-201ENST00000534107 320 ntBASIC1.94□□□□□ -2.1
PDLIM4P50479 AC108706.1-201ENST00000611053 297 ntBASIC1.94□□□□□ -2.1
PDLIM4P50479 Y_RNA.802-201ENST00000614892 130 ntBASIC1.94□□□□□ -2.1
PDLIM4P50479 MIR548AY-201ENST00000617669 107 ntBASIC1.94□□□□□ -2.1
PDLIM4P50479 U6.73-201ENST00000619194 103 ntBASIC1.94□□□□□ -2.1
PDLIM4P50479 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.94□□□□□ -2.1
PDLIM4P50479 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
PDLIM4P50479 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
PDLIM4P50479 Y_RNA.23-201ENST00000362496 106 ntBASIC1.93□□□□□ -2.1
PDLIM4P50479 RNU6-674P-201ENST00000363831 107 ntBASIC1.93□□□□□ -2.1
PDLIM4P50479 RNU6-1048P-201ENST00000364054 107 ntBASIC1.93□□□□□ -2.1
PDLIM4P50479 U8.7-201ENST00000364940 136 ntBASIC1.93□□□□□ -2.1
PDLIM4P50479 RNA5SP37-201ENST00000365420 130 ntBASIC1.93□□□□□ -2.1
PDLIM4P50479 RNU6-746P-201ENST00000384112 109 ntBASIC1.93□□□□□ -2.1
PDLIM4P50479 SNORD116-13-201ENST00000384408 92 ntBASIC1.93□□□□□ -2.1
PDLIM4P50479 RNU6-493P-201ENST00000391321 108 ntBASIC1.93□□□□□ -2.1
PDLIM4P50479 MTCO2P33-201ENST00000402100 465 ntBASIC1.93□□□□□ -2.1
PDLIM4P50479 SNORD23.1-201ENST00000408212 104 ntBASIC1.93□□□□□ -2.1
PDLIM4P50479 AC060773.1-201ENST00000421698 310 ntBASIC1.93□□□□□ -2.1
PDLIM4P50479 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.93□□□□□ -2.1
PDLIM4P50479 AL137100.2-201ENST00000555786 315 ntBASIC1.93□□□□□ -2.1
PDLIM4P50479 AC127455.1-201ENST00000565496 145 ntBASIC1.93□□□□□ -2.1
PDLIM4P50479 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC1.93□□□□□ -2.1
PDLIM4P50479 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.93□□□□□ -2.1
PDLIM4P50479 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 117 ms